BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003900
         (748 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containi...   176   6e-42
ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containi...   166   6e-39
ref|XP_002528356.1| pentatricopeptide repeat-containing protein,...   160   3e-37
ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containi...   150   3e-34
ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containi...   146   4e-33

>ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
           [Vitis vinifera]
          Length = 590

 Score =  176 bits (445), Expect = 6e-42
 Identities = 92/135 (68%), Positives = 105/135 (77%), Gaps = 1/135 (0%)
 Frame = -1

Query: 406 DPRCTHAQLIKTENNDLSLINNLITSYSKSNLLSDALRLFRQ-IPSPNVVTWTALISSYT 230
           +PR  HAQ IK+   D S  N+LIT YSKSNLLS A+R+F   IPSPNVV+WTALIS+Y 
Sbjct: 31  NPRLIHAQAIKSAITDRSFYNSLITLYSKSNLLSKAVRIFHHHIPSPNVVSWTALISAYA 90

Query: 229 NTVFSFHHFISMLRYPKLPNERTFASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPFTGS 50
           +T F+  HFISMLR+P LPN+RT ASL KTCASL SL FGLQLHS SLKL LS  PF  S
Sbjct: 91  STSFALLHFISMLRHPTLPNQRTLASLLKTCASLPSLSFGLQLHSLSLKLSLSAQPFVSS 150

Query: 49  ALVHFYSKCRLPNDA 5
           ALV+FYSKCRLP +A
Sbjct: 151 ALVNFYSKCRLPLEA 165


>ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
           gi|449487598|ref|XP_004157706.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 583

 Score =  166 bits (419), Expect = 6e-39
 Identities = 81/135 (60%), Positives = 101/135 (74%)
 Frame = -1

Query: 409 NDPRCTHAQLIKTENNDLSLINNLITSYSKSNLLSDALRLFRQIPSPNVVTWTALISSYT 230
           +DPR  HAQ IK+   +  + NNLIT YSK+NLL  + RLF QIP P++V+WTALIS+++
Sbjct: 27  SDPRIDHAQAIKSPATECVVYNNLITRYSKANLLHYSARLFNQIPFPDIVSWTALISAHS 86

Query: 229 NTVFSFHHFISMLRYPKLPNERTFASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPFTGS 50
           +T  S  HF+SMLRYP  PNERT A LFKTCASL  + FG  LHS + KL L + P++GS
Sbjct: 87  STFLSLRHFVSMLRYPTFPNERTLAPLFKTCASLPCVSFGFALHSLAYKLSLCNGPYSGS 146

Query: 49  ALVHFYSKCRLPNDA 5
           ALV+FYSKCRL NDA
Sbjct: 147 ALVNFYSKCRLFNDA 161


>ref|XP_002528356.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532224|gb|EEF34028.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 356

 Score =  160 bits (405), Expect = 3e-37
 Identities = 81/137 (59%), Positives = 102/137 (74%), Gaps = 3/137 (2%)
 Frame = -1

Query: 406 DPRCTHAQLIKTENNDLSLINNLITSYSKSN---LLSDALRLFRQIPSPNVVTWTALISS 236
           DPR  HAQ IK+   +LS  N+LIT YS+S    + S A RLF  +PSPN+V+WT+LIS+
Sbjct: 10  DPRILHAQAIKSPYTNLSCFNHLITLYSRSPNFLVFSYANRLFSLLPSPNIVSWTSLISA 69

Query: 235 YTNTVFSFHHFISMLRYPKLPNERTFASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPFT 56
           +T++  S HHF+SMLR P LPN+RT ASLFK C +LS+L FG  LHS +LKL L   PF+
Sbjct: 70  HTHSFLSLHHFLSMLRRPILPNQRTLASLFKACTNLSALSFGFSLHSMALKLSLDTQPFS 129

Query: 55  GSALVHFYSKCRLPNDA 5
           GSALV+FYSKCRLP +A
Sbjct: 130 GSALVNFYSKCRLPENA 146


>ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  150 bits (379), Expect = 3e-34
 Identities = 75/138 (54%), Positives = 102/138 (73%), Gaps = 1/138 (0%)
 Frame = -1

Query: 415 MSNDPRCTHAQLIKTENNDLSLINNLITSYSKSNLLSDALRLFRQIP-SPNVVTWTALIS 239
           MS DPR  HA+ I +   D ++ NNLIT YSKSNL S A+ LF ++P  PNVV+WTALIS
Sbjct: 15  MSMDPRVRHARAITSHAKDRAVWNNLITHYSKSNLSSYAVSLFHRLPFPPNVVSWTALIS 74

Query: 238 SYTNTVFSFHHFISMLRYPKLPNERTFASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPF 59
           +++NT+ S  HF++MLR+  LPN RT ASLF TCA+L+++ F L LHS +LKL L+H PF
Sbjct: 75  AHSNTLLSLRHFLAMLRHNTLPNHRTLASLFATCAALTAVSFALSLHSLALKLALAHHPF 134

Query: 58  TGSALVHFYSKCRLPNDA 5
             S+L+  Y+K R+P++A
Sbjct: 135 PASSLLSVYAKLRMPHNA 152


>ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  146 bits (369), Expect = 4e-33
 Identities = 75/138 (54%), Positives = 101/138 (73%), Gaps = 1/138 (0%)
 Frame = -1

Query: 415 MSNDPRCTHAQLIKTENNDLSLINNLITSYSKSNLLSDALRLFRQIP-SPNVVTWTALIS 239
           MS DPR  HAQ I +   D ++ NNLIT YSKS+L S A+ LF+++P  PNVV+WTALIS
Sbjct: 15  MSMDPRARHAQAITSHIKDRAVWNNLITHYSKSDLSSYAVSLFQRLPFPPNVVSWTALIS 74

Query: 238 SYTNTVFSFHHFISMLRYPKLPNERTFASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPF 59
           +++NT+ S  HF++MLR+  LPN RT ASLF TCA+L+++ F L LHS +LKL LS  PF
Sbjct: 75  AHSNTLLSLRHFLAMLRHNTLPNHRTVASLFTTCAALTAVSFALSLHSLALKLSLSQHPF 134

Query: 58  TGSALVHFYSKCRLPNDA 5
             S+L+  Y+K R+P +A
Sbjct: 135 PASSLLSLYAKLRMPLNA 152