BLASTX nr result

ID: Coptis24_contig00003805 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003805
         (475 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517034.1| conserved hypothetical protein [Ricinus comm...   106   2e-21
ref|XP_002314658.1| predicted protein [Populus trichocarpa] gi|2...   102   3e-20
ref|XP_002312563.1| predicted protein [Populus trichocarpa] gi|2...   100   9e-20
ref|XP_003518966.1| PREDICTED: uncharacterized protein LOC100500...   100   1e-19
ref|NP_567436.1| uncharacterized protein [Arabidopsis thaliana] ...    99   4e-19

>ref|XP_002517034.1| conserved hypothetical protein [Ricinus communis]
           gi|223543669|gb|EEF45197.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 76

 Score =  106 bits (264), Expect = 2e-21
 Identities = 48/59 (81%), Positives = 55/59 (93%)
 Frame = -2

Query: 465 MSSLGTSKGILEIAKFGIYVSVPIVLMYYFANNTKNMHKFMGSRSYVVYPPEALRPPSP 289
           MSSLGTSKGILEIAKFG+YV+VPI+LMY FANNTKN+ KFMG++SY+VYPPE  RPPSP
Sbjct: 1   MSSLGTSKGILEIAKFGVYVTVPIILMYTFANNTKNLQKFMGNKSYIVYPPEGPRPPSP 59


>ref|XP_002314658.1| predicted protein [Populus trichocarpa] gi|222863698|gb|EEF00829.1|
           predicted protein [Populus trichocarpa]
          Length = 76

 Score =  102 bits (254), Expect = 3e-20
 Identities = 46/59 (77%), Positives = 55/59 (93%)
 Frame = -2

Query: 465 MSSLGTSKGILEIAKFGIYVSVPIVLMYYFANNTKNMHKFMGSRSYVVYPPEALRPPSP 289
           MSSLGTSKGILEIAKFG+YV+VP+VLMY FANNTKN+ KFMG+RSY+V+P + +RPPSP
Sbjct: 1   MSSLGTSKGILEIAKFGVYVTVPVVLMYAFANNTKNLQKFMGNRSYIVFPSKIVRPPSP 59


>ref|XP_002312563.1| predicted protein [Populus trichocarpa] gi|222852383|gb|EEE89930.1|
           predicted protein [Populus trichocarpa]
          Length = 98

 Score =  100 bits (250), Expect = 9e-20
 Identities = 47/60 (78%), Positives = 53/60 (88%)
 Frame = -2

Query: 468 KMSSLGTSKGILEIAKFGIYVSVPIVLMYYFANNTKNMHKFMGSRSYVVYPPEALRPPSP 289
           K SSLGTSKGILEIAKFGIYV+VPIVLMY FANNT N+ KFMG+RSY+V+P   +RPPSP
Sbjct: 22  KKSSLGTSKGILEIAKFGIYVTVPIVLMYSFANNTNNLQKFMGNRSYIVFPSNTVRPPSP 81


>ref|XP_003518966.1| PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
           gi|255630837|gb|ACU15781.1| unknown [Glycine max]
          Length = 76

 Score =  100 bits (249), Expect = 1e-19
 Identities = 46/59 (77%), Positives = 52/59 (88%)
 Frame = -2

Query: 465 MSSLGTSKGILEIAKFGIYVSVPIVLMYYFANNTKNMHKFMGSRSYVVYPPEALRPPSP 289
           MSSLGTSKGILEIAKFG+YV+VPI+LMY FANN  N+ KFMG RSY+ YPPEA +PPSP
Sbjct: 1   MSSLGTSKGILEIAKFGVYVTVPIILMYTFANNPSNLRKFMGHRSYIEYPPEAEKPPSP 59


>ref|NP_567436.1| uncharacterized protein [Arabidopsis thaliana]
           gi|21593737|gb|AAM65704.1| unknown [Arabidopsis
           thaliana] gi|26450874|dbj|BAC42544.1| unknown protein
           [Arabidopsis thaliana] gi|88010872|gb|ABD38866.1|
           At4g14615 [Arabidopsis thaliana]
           gi|332658066|gb|AEE83466.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 76

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 46/59 (77%), Positives = 53/59 (89%)
 Frame = -2

Query: 465 MSSLGTSKGILEIAKFGIYVSVPIVLMYYFANNTKNMHKFMGSRSYVVYPPEALRPPSP 289
           MSS+GTSKG+LEI KFG+YV+VPIVLMY FANN+ N+ KFMG+RSYVVYP EA RPPSP
Sbjct: 1   MSSVGTSKGVLEIVKFGVYVAVPIVLMYTFANNSTNIKKFMGNRSYVVYPEEAPRPPSP 59


Top