BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003723
         (1187 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277104.1| PREDICTED: ATP-dependent Clp protease proteo...   425   e-116
ref|XP_002889406.1| hypothetical protein ARALYDRAFT_887394 [Arab...   424   e-116
ref|NP_563657.1| ATP-dependent Clp protease, protease subunit [A...   422   e-116
ref|XP_002302770.1| predicted protein [Populus trichocarpa] gi|2...   413   e-113
ref|XP_002515273.1| ATP-dependent Clp protease proteolytic subun...   413   e-113

>ref|XP_002277104.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 5,
           chloroplastic isoform 1 [Vitis vinifera]
           gi|297743987|emb|CBI36957.3| unnamed protein product
           [Vitis vinifera]
          Length = 289

 Score =  425 bits (1092), Expect = e-116
 Identities = 217/249 (87%), Positives = 225/249 (90%), Gaps = 14/249 (5%)
 Frame = +1

Query: 256 RKSSVSPTKAVYS-----PD---RQGLWSIRDDIQVPF------YAQGAQGPPPMVQERF 393
           ++  V+P KA YS     PD   RQG WSIRDD+Q+P       YAQG QGPPPMVQERF
Sbjct: 41  KRLRVAPVKAAYSGEFWAPDKNSRQGTWSIRDDLQIPSSAYFPTYAQGGQGPPPMVQERF 100

Query: 394 QSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAI 573
           QSV+SQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDP KDIVMYVNSPGGSVTAGMAI
Sbjct: 101 QSVVSQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPDKDIVMYVNSPGGSVTAGMAI 160

Query: 574 FDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDID 753
           FDTMRHIRPDVSTVCVGLAASMGAFLLS GTKGKRYSLPNSRIMIHQPLGGAQGGQTDID
Sbjct: 161 FDTMRHIRPDVSTVCVGLAASMGAFLLSCGTKGKRYSLPNSRIMIHQPLGGAQGGQTDID 220

Query: 754 IQANEMLHHKANLNGYLSYHTGQTLEKINQDTDRDFFMSAKEAKEYGLIDGVILNPLKAL 933
           IQANEMLHHKANLNGYLSYHTGQ+LEKINQDTDRDFFMSAKEAKEYGLIDGVILNPLKAL
Sbjct: 221 IQANEMLHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVILNPLKAL 280

Query: 934 QPLPATADQ 960
           +PL ATADQ
Sbjct: 281 KPLVATADQ 289


>ref|XP_002889406.1| hypothetical protein ARALYDRAFT_887394 [Arabidopsis lyrata subsp.
           lyrata] gi|297335248|gb|EFH65665.1| hypothetical protein
           ARALYDRAFT_887394 [Arabidopsis lyrata subsp. lyrata]
          Length = 298

 Score =  424 bits (1089), Expect = e-116
 Identities = 231/299 (77%), Positives = 241/299 (80%), Gaps = 25/299 (8%)
 Frame = +1

Query: 127 MAHSCVS----SLRFXXXXXXXXXXXXXXXXXXKLSLPFQPLFRPNLRKS-------SVS 273
           MAH+CVS    SLRF                  KLSLPF+PL     +K          S
Sbjct: 1   MAHACVSTSASSLRFTAGFVSASPNGSSFDSP-KLSLPFEPLRSRKTKKLVSDRKNWKNS 59

Query: 274 PTKAVYS--------PDRQGLWSIRDDIQVP------FYAQGAQGPPPMVQERFQSVISQ 411
             KAVYS        P  QG+WSIRDD+QVP       YAQG QGPPPMVQERFQS+ISQ
Sbjct: 60  TPKAVYSGNLWTPEIPSPQGVWSIRDDLQVPSSPYFPVYAQG-QGPPPMVQERFQSIISQ 118

Query: 412 LFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH 591
           LFQ+RIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH
Sbjct: 119 LFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH 178

Query: 592 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 771
           IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM
Sbjct: 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 238

Query: 772 LHHKANLNGYLSYHTGQTLEKINQDTDRDFFMSAKEAKEYGLIDGVILNPLKALQPLPA 948
           LHHKANLNGYL+YHTGQ+LEKINQDTDRDFFMSAKEAKEYGLIDGVI+NPLKALQPL A
Sbjct: 239 LHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPLAA 297


>ref|NP_563657.1| ATP-dependent Clp protease, protease subunit [Arabidopsis thaliana]
           gi|75313059|sp|Q9S834.1|CLPP5_ARATH RecName:
           Full=ATP-dependent Clp protease proteolytic subunit 5,
           chloroplastic; AltName: Full=Endopeptidase ClpP5;
           Short=nClpP5; AltName: Full=nClpP1; Flags: Precursor
           gi|9972387|gb|AAG10637.1|AC022521_15 ATP-dependent Clp
           protease subunit ClpP [Arabidopsis thaliana]
           gi|4887543|emb|CAB43488.1| ATP-dependent Clp protease
           subunit ClpP [Arabidopsis thaliana]
           gi|5360579|dbj|BAA82065.1| nClpP1 [Arabidopsis thaliana]
           gi|21536639|gb|AAM60971.1| ATP-dependent Clp protease
           proteolytic subunit ClpP5 [Arabidopsis thaliana]
           gi|89274139|gb|ABD65590.1| At1g02560 [Arabidopsis
           thaliana] gi|332189323|gb|AEE27444.1| ATP-dependent Clp
           protease, protease subunit [Arabidopsis thaliana]
          Length = 298

 Score =  422 bits (1086), Expect = e-116
 Identities = 231/299 (77%), Positives = 240/299 (80%), Gaps = 25/299 (8%)
 Frame = +1

Query: 127 MAHSCVS----SLRFXXXXXXXXXXXXXXXXXXKLSLPFQPLFRPNLRKS-------SVS 273
           MAH+CVS    SLRF                  KLSLPF+PL      K          S
Sbjct: 1   MAHACVSTSASSLRFTAGFVSASPNGSSFDSP-KLSLPFEPLRSRKTNKLVSDRKNWKNS 59

Query: 274 PTKAVYS--------PDRQGLWSIRDDIQVPF------YAQGAQGPPPMVQERFQSVISQ 411
             KAVYS        P  QG+WSIRDD+QVP       YAQG QGPPPMVQERFQS+ISQ
Sbjct: 60  TPKAVYSGNLWTPEIPSPQGVWSIRDDLQVPSSPYFPAYAQG-QGPPPMVQERFQSIISQ 118

Query: 412 LFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH 591
           LFQ+RIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH
Sbjct: 119 LFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH 178

Query: 592 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 771
           IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM
Sbjct: 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 238

Query: 772 LHHKANLNGYLSYHTGQTLEKINQDTDRDFFMSAKEAKEYGLIDGVILNPLKALQPLPA 948
           LHHKANLNGYL+YHTGQ+LEKINQDTDRDFFMSAKEAKEYGLIDGVI+NPLKALQPL A
Sbjct: 239 LHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPLAA 297


>ref|XP_002302770.1| predicted protein [Populus trichocarpa] gi|222844496|gb|EEE82043.1|
           predicted protein [Populus trichocarpa]
          Length = 300

 Score =  413 bits (1062), Expect = e-113
 Identities = 225/304 (74%), Positives = 238/304 (78%), Gaps = 26/304 (8%)
 Frame = +1

Query: 127 MAHSCVS---SLRFXXXXXXXXXXXXXXXXXXKLSLPFQPLFRPNLRKSS-------VSP 276
           MAHSC+S   SL F                  K S PF  L    LR+          S 
Sbjct: 1   MAHSCLSTSTSLLFSPNPSLGSAPNAD-----KFSFPFHHLRYSKLRELGSDRKAIQTSS 55

Query: 277 TKAVYSPD--------RQGLWSIRDDIQVPF------YAQGAQG--PPPMVQERFQSVIS 408
            KAVYS +        RQG+WS+R+D+Q+P       YA GAQG  PPPMV ERFQSVIS
Sbjct: 56  VKAVYSGEFWAPERSLRQGIWSMREDLQIPSSPFFPAYANGAQGQGPPPMVHERFQSVIS 115

Query: 409 QLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMR 588
           QLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDP KDIVMYVNSPGGSVTAGMAIFDTMR
Sbjct: 116 QLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMR 175

Query: 589 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANE 768
           HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQ+DIDIQANE
Sbjct: 176 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDIQANE 235

Query: 769 MLHHKANLNGYLSYHTGQTLEKINQDTDRDFFMSAKEAKEYGLIDGVILNPLKALQPLPA 948
           MLHHKANLNGYL+YHTGQ+LEKINQDTDRD+FMSAKEAK+YGLIDGVILNPLK LQPL A
Sbjct: 236 MLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSAKEAKDYGLIDGVILNPLKVLQPLAA 295

Query: 949 TADQ 960
            ADQ
Sbjct: 296 AADQ 299


>ref|XP_002515273.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis] gi|223545753|gb|EEF47257.1| ATP-dependent Clp
           protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 305

 Score =  413 bits (1061), Expect = e-113
 Identities = 217/272 (79%), Positives = 228/272 (83%), Gaps = 24/272 (8%)
 Frame = +1

Query: 214 KLSLPFQPLFRPNLRK-------SSVSPTKAVYS--------PDRQGLWSIRDDIQVPF- 345
           KLSLPF+PL     RK       S  S  KAVYS          RQG+WSIRDD+++P  
Sbjct: 32  KLSLPFEPLRSRKFRKLSSIRKNSQPSSAKAVYSGQFWAPEKTSRQGIWSIRDDLEIPSS 91

Query: 346 -----YAQG---AQGPPPMVQERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDA 501
                YA G   AQGPPPMV ERFQSVISQLFQ+RIIRCGGAVDDDMANIIVAQLLYLDA
Sbjct: 92  PYFPAYANGQGQAQGPPPMVHERFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDA 151

Query: 502 VDPTKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRY 681
           VDP KDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRY
Sbjct: 152 VDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRY 211

Query: 682 SLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLSYHTGQTLEKINQDTDRDF 861
           SLPNSRIMIHQPLGGAQGGQ+DIDIQANEMLHHKANLNGYL+YHTGQ+LEKINQDTDRD+
Sbjct: 212 SLPNSRIMIHQPLGGAQGGQSDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDY 271

Query: 862 FMSAKEAKEYGLIDGVILNPLKALQPLPATAD 957
           FMSAKEA +YGLIDGVI NPLKA QPL A AD
Sbjct: 272 FMSAKEATDYGLIDGVITNPLKAFQPLAAAAD 303