BLASTX nr result
ID: Coptis24_contig00003686
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00003686
(708 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281465.1| PREDICTED: uncharacterized protein LOC100256... 87 2e-26
ref|XP_002316248.1| predicted protein [Populus trichocarpa] gi|2... 82 2e-22
ref|XP_002275792.1| PREDICTED: uncharacterized protein LOC100254... 72 1e-21
emb|CAN63318.1| hypothetical protein VITISV_030353 [Vitis vinifera] 72 2e-21
ref|XP_002530394.1| conserved hypothetical protein [Ricinus comm... 82 7e-21
>ref|XP_002281465.1| PREDICTED: uncharacterized protein LOC100256408 [Vitis vinifera]
Length = 417
Score = 86.7 bits (213), Expect(2) = 2e-26
Identities = 42/80 (52%), Positives = 58/80 (72%), Gaps = 4/80 (5%)
Frame = +2
Query: 479 TREMARSLLHQENPKTRVMAGSPESTLCGLGSWAG----SSRGSPNGPSMVSSPPSTPLN 646
T+++A S + KT V++GSP+STL +G+W+G SS GSPNG S VSSPP+TPL+
Sbjct: 97 TQKLAPSFSSENQEKTWVLSGSPQSTLSAVGNWSGRSTVSSNGSPNGRSRVSSPPTTPLS 156
Query: 647 GGEDAWDLLYAAAAEVVRMR 706
DAWDL+YAAA +V R++
Sbjct: 157 EKTDAWDLIYAAAGQVARLK 176
Score = 58.5 bits (140), Expect(2) = 2e-26
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 14/68 (20%)
Frame = +1
Query: 223 FWLPSEFLTDDDIKKFQK------------EVNCFPTEFP--FSSYGGGGGINSPVESFT 360
FWLPS FLTD+D ++ E++ FP+EFP F S+G +NSPVES
Sbjct: 10 FWLPSHFLTDEDTLMDKENFNDNGANPVGAEIHGFPSEFPYEFDSFGSSSALNSPVESVM 69
Query: 361 SSNETESD 384
SS ETESD
Sbjct: 70 SSTETESD 77
>ref|XP_002316248.1| predicted protein [Populus trichocarpa] gi|222865288|gb|EEF02419.1|
predicted protein [Populus trichocarpa]
Length = 416
Score = 81.6 bits (200), Expect(2) = 2e-22
Identities = 43/77 (55%), Positives = 52/77 (67%)
Frame = +2
Query: 476 LTREMARSLLHQENPKTRVMAGSPESTLCGLGSWAGSSRGSPNGPSMVSSPPSTPLNGGE 655
LTR + + L + K VMAGSPESTL GLGSW+ SS GSPNG V SPP+TP
Sbjct: 87 LTRRLTQQLTVKPEKKW-VMAGSPESTLSGLGSWSVSSNGSPNG---VMSPPTTPYGAKN 142
Query: 656 DAWDLLYAAAAEVVRMR 706
D WDL+YAAA +V R++
Sbjct: 143 DTWDLIYAAAGQVARLK 159
Score = 50.1 bits (118), Expect(2) = 2e-22
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 15/71 (21%)
Frame = +1
Query: 214 DGEFWLPSEFLTDDDIKKFQKEVN------------CFPTEFP--FSSYGGGGGINSPVE 351
D E WLP EFLT +++ ++ N CFPTEFP F S+G ++SPVE
Sbjct: 7 DVESWLPIEFLTAEEVLMDKENFNNNGFKTELKPSLCFPTEFPYEFDSFGTSSALSSPVE 66
Query: 352 S-FTSSNETES 381
S SS ETES
Sbjct: 67 SVMGSSTETES 77
>ref|XP_002275792.1| PREDICTED: uncharacterized protein LOC100254537 [Vitis vinifera]
Length = 409
Score = 72.4 bits (176), Expect(2) = 1e-21
Identities = 46/92 (50%), Positives = 53/92 (57%), Gaps = 15/92 (16%)
Frame = +2
Query: 476 LTREMARSLLHQE-----------NPKTRVMAGSPESTLC----GLGSWAGSSRGSPNGP 610
LTR++A + L E N KT MAGSP+STLC G G GSSRGSP P
Sbjct: 82 LTRQIAHTALQDEFVKVDHGFVYENKKTWGMAGSPQSTLCAVGGGCGCKQGSSRGSPISP 141
Query: 611 SMVSSPPSTPLNGGEDAWDLLYAAAAEVVRMR 706
S VSSPP+T WDLLYAAA EV ++R
Sbjct: 142 SQVSSPPAT--------WDLLYAAAGEVAKIR 165
Score = 57.0 bits (136), Expect(2) = 1e-21
Identities = 34/74 (45%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Frame = +1
Query: 196 MAEDFGDGEFWLPSEFLTDDDIKKFQKEVN------CFPTEFPFSSY-----GGGGGINS 342
MAE DGEFWLP++FLTD DI + +N T FSSY G ++S
Sbjct: 1 MAESLDDGEFWLPAQFLTDKDILMDKGNINNSRNKGGITTGIGFSSYGYDLFGPSSDLSS 60
Query: 343 PVESFTSSNETESD 384
PVES S ETESD
Sbjct: 61 PVESVNGSTETESD 74
>emb|CAN63318.1| hypothetical protein VITISV_030353 [Vitis vinifera]
Length = 344
Score = 72.0 bits (175), Expect(2) = 2e-21
Identities = 45/92 (48%), Positives = 53/92 (57%), Gaps = 15/92 (16%)
Frame = +2
Query: 476 LTREMARSLLHQE-----------NPKTRVMAGSPESTLCGLGSWAG----SSRGSPNGP 610
LTR++A + L E N KT MAGSP+STLC +G G SSRGSP P
Sbjct: 82 LTRQIAHAALQDEFVKVDHGFVYENKKTWGMAGSPQSTLCAVGGGCGCKQASSRGSPISP 141
Query: 611 SMVSSPPSTPLNGGEDAWDLLYAAAAEVVRMR 706
S VSSPP+T WDLLYAAA EV ++R
Sbjct: 142 SQVSSPPAT--------WDLLYAAAGEVAKIR 165
Score = 56.6 bits (135), Expect(2) = 2e-21
Identities = 34/74 (45%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Frame = +1
Query: 196 MAEDFGDGEFWLPSEFLTDDDIKKFQKEVN------CFPTEFPFSSY-----GGGGGINS 342
MAE DGEFWLP++FLTD DI + +N T FSSY G ++S
Sbjct: 1 MAESLDDGEFWLPAQFLTDKDIIMDKGNINNSRNKGGITTGIGFSSYRYDLFGPSSDLSS 60
Query: 343 PVESFTSSNETESD 384
PVES S ETESD
Sbjct: 61 PVESVNGSTETESD 74
>ref|XP_002530394.1| conserved hypothetical protein [Ricinus communis]
gi|223530043|gb|EEF31964.1| conserved hypothetical
protein [Ricinus communis]
Length = 434
Score = 82.0 bits (201), Expect(2) = 7e-21
Identities = 43/77 (55%), Positives = 53/77 (68%)
Frame = +2
Query: 476 LTREMARSLLHQENPKTRVMAGSPESTLCGLGSWAGSSRGSPNGPSMVSSPPSTPLNGGE 655
LTR + + L Q P+ VMAGSPESTL G+GSW+ SS GSPNG V SPP+TP
Sbjct: 86 LTRRLTQQLTVQ--PEKWVMAGSPESTLSGIGSWSVSSNGSPNG---VLSPPTTPFGVKN 140
Query: 656 DAWDLLYAAAAEVVRMR 706
D WDL+YAAA +V R++
Sbjct: 141 DTWDLIYAAAGQVARLK 157
Score = 44.7 bits (104), Expect(2) = 7e-21
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 10/64 (15%)
Frame = +1
Query: 220 EFWLPSEFLT-------DDDIKKFQKEVNCFPTEFP--FSSYG-GGGGINSPVESFTSSN 369
E WLP+EFL+ +D +F+K FPTEFP F S+G ++SP ES S
Sbjct: 13 ESWLPTEFLSMEKENFNKNDFSEFKKSSFTFPTEFPYEFDSFGCSPTSLSSPDESVIGST 72
Query: 370 ETES 381
ETES
Sbjct: 73 ETES 76