BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003635
         (899 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tpg|DAA37074.1| TPA: 40S ribosomal protein S11 [Zea mays]             256   5e-66
ref|XP_003609505.1| 40S ribosomal protein S11 [Medicago truncatu...   256   5e-66
ref|XP_003629390.1| 40S ribosomal protein S11 [Medicago truncatu...   255   9e-66
ref|XP_002454168.1| hypothetical protein SORBIDRAFT_04g025870 [S...   254   2e-65
ref|NP_194809.1| 40S ribosomal protein S11-2 [Arabidopsis thalia...   253   6e-65

>tpg|DAA37074.1| TPA: 40S ribosomal protein S11 [Zea mays]
          Length = 571

 Score =  256 bits (654), Expect = 5e-66
 Identities = 131/178 (73%), Positives = 141/178 (79%)
 Frame = -2

Query: 880 PRTLFLSLYRIRVLLQISIIMAEQTEKAFLKQPKVFLCSXXXXXXXXXXXXGNRFYKSIG 701
           PRT   SLYR+      +  MAEQTE+AFLKQPKVFLCS            GNRF+K+IG
Sbjct: 393 PRTS-ASLYRVPASPLSAASMAEQTERAFLKQPKVFLCSKKATKVNKPGKGGNRFWKNIG 451

Query: 700 LNFKTPREAIEGTYIDKKCPFVGDVSIRGRIVSGVCHSAKMVRTIIVRRDYLHFVKKYQR 521
           L FKTPREAIEGTYIDKKCPF G VSIRGRI++G CHSAKM RTIIVRR+YLHFVKKYQR
Sbjct: 452 LGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 511

Query: 520 YEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVIPAXXXXXXGKKAFT 347
           YEKRHSNIPAH+SPCFRVKEGD V IGQCRP+SKTVRFNVLKVIPA       KKAFT
Sbjct: 512 YEKRHSNIPAHISPCFRVKEGDHVIIGQCRPVSKTVRFNVLKVIPAGSKSGAVKKAFT 569


>ref|XP_003609505.1| 40S ribosomal protein S11 [Medicago truncatula]
           gi|217075074|gb|ACJ85897.1| unknown [Medicago
           truncatula] gi|355510560|gb|AES91702.1| 40S ribosomal
           protein S11 [Medicago truncatula]
           gi|388497962|gb|AFK37047.1| unknown [Medicago
           truncatula]
          Length = 160

 Score =  256 bits (654), Expect = 5e-66
 Identities = 126/160 (78%), Positives = 136/160 (85%)
 Frame = -2

Query: 820 MAEQTEKAFLKQPKVFLCSXXXXXXXXXXXXGNRFYKSIGLNFKTPREAIEGTYIDKKCP 641
           MAEQTEKAFLKQPKVFLCS            GNRF+KS+GL FKTPREAI+GTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCP 60

Query: 640 FVGDVSIRGRIVSGVCHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 461
           F G+VSIRGRI++G CHSAKM RTI+VRR+YLHF+KKYQRYEKRHSNIPAHVSPCFRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 460 GDRVTIGQCRPLSKTVRFNVLKVIPAXXXXXXGKKAFTGV 341
           GD V IGQCRPLSKTVRFNVLKVIPA      GKKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM 160


>ref|XP_003629390.1| 40S ribosomal protein S11 [Medicago truncatula]
           gi|217071062|gb|ACJ83891.1| unknown [Medicago
           truncatula] gi|355523412|gb|AET03866.1| 40S ribosomal
           protein S11 [Medicago truncatula]
           gi|388491240|gb|AFK33686.1| unknown [Medicago
           truncatula]
          Length = 160

 Score =  255 bits (652), Expect = 9e-66
 Identities = 127/160 (79%), Positives = 135/160 (84%)
 Frame = -2

Query: 820 MAEQTEKAFLKQPKVFLCSXXXXXXXXXXXXGNRFYKSIGLNFKTPREAIEGTYIDKKCP 641
           MAEQTEKAFLKQPKVFLCS            GNRF+KS+GL FKTPREA EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSVGLGFKTPREATEGTYIDKKCP 60

Query: 640 FVGDVSIRGRIVSGVCHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 461
           F G+VSIRGRI++G CHSAKM RTIIVRR+YLHF+KKYQRYEKRHSNIPAHVSPCFRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 460 GDRVTIGQCRPLSKTVRFNVLKVIPAXXXXXXGKKAFTGV 341
           GD V IGQCRPLSKTVRFNVLKVIPA      GKKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM 160


>ref|XP_002454168.1| hypothetical protein SORBIDRAFT_04g025870 [Sorghum bicolor]
           gi|242076386|ref|XP_002448129.1| hypothetical protein
           SORBIDRAFT_06g021750 [Sorghum bicolor]
           gi|241933999|gb|EES07144.1| hypothetical protein
           SORBIDRAFT_04g025870 [Sorghum bicolor]
           gi|241939312|gb|EES12457.1| hypothetical protein
           SORBIDRAFT_06g021750 [Sorghum bicolor]
          Length = 160

 Score =  254 bits (648), Expect = 2e-65
 Identities = 126/158 (79%), Positives = 132/158 (83%)
 Frame = -2

Query: 820 MAEQTEKAFLKQPKVFLCSXXXXXXXXXXXXGNRFYKSIGLNFKTPREAIEGTYIDKKCP 641
           MAEQTEKAFLKQPKVFLCS            GNRF+K+IGL FKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKAAKGNKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 60

Query: 640 FVGDVSIRGRIVSGVCHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 461
           F G VSIRGRI++G CHSAKM RTIIVRR+YLHFVKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 460 GDRVTIGQCRPLSKTVRFNVLKVIPAXXXXXXGKKAFT 347
           GD V IGQCRPLSKTVRFNVLKVIPA       KKAFT
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSKSGAVKKAFT 158


>ref|NP_194809.1| 40S ribosomal protein S11-2 [Arabidopsis thaliana]
           gi|11134432|sp|O65569.2|RS112_ARATH RecName: Full=40S
           ribosomal protein S11-2 gi|5708091|emb|CAA18213.2|
           ribosomal protein S11-like [Arabidopsis thaliana]
           gi|7269981|emb|CAB79798.1| ribosomal protein S11-like
           [Arabidopsis thaliana] gi|15028245|gb|AAK76711.1|
           putative ribosomal protein S11 [Arabidopsis thaliana]
           gi|20258899|gb|AAM14143.1| putative ribosomal protein
           S11 [Arabidopsis thaliana] gi|332660410|gb|AEE85810.1|
           40S ribosomal protein S11-2 [Arabidopsis thaliana]
          Length = 159

 Score =  253 bits (645), Expect = 6e-65
 Identities = 130/160 (81%), Positives = 136/160 (85%)
 Frame = -2

Query: 820 MAEQTEKAFLKQPKVFLCSXXXXXXXXXXXXGNRFYKSIGLNFKTPREAIEGTYIDKKCP 641
           MAEQTEKAFLKQPKVFL S            GNRF+K+IGL FKTPREAIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 640 FVGDVSIRGRIVSGVCHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 461
           F G VSIRGRI+SG CHSAKM RTIIVRRDYLHFVKKY+RYEKRHSNIPAHVSPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 460 GDRVTIGQCRPLSKTVRFNVLKVIPAXXXXXXGKKAFTGV 341
           GDRVTIGQCRPLSKTVRFNVLKVIPA      GKKAFTG+
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPA-GSSSIGKKAFTGM 159