BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003593
         (1262 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK95986.1| unknown [Populus trichocarpa]                          318   2e-84
ref|XP_002321945.1| predicted protein [Populus trichocarpa] gi|2...   316   9e-84
ref|XP_002524427.1| Plastid-specific 30S ribosomal protein 1, ch...   315   2e-83
ref|XP_002317839.1| predicted protein [Populus trichocarpa] gi|2...   313   5e-83
ref|XP_003634154.1| PREDICTED: 30S ribosomal protein 1, chloropl...   311   3e-82

>gb|ABK95986.1| unknown [Populus trichocarpa]
          Length = 306

 Score =  318 bits (814), Expect = 2e-84
 Identities = 169/234 (72%), Positives = 192/234 (82%), Gaps = 7/234 (2%)
 Frame = +2

Query: 269 VKMSWDGPGLSSVKLIIQGKHLTLSDTVKKYVEDKVGKAVQKHTHLVREVDVRLSVRGDE 448
           ++MSWDGP LSSVKLIIQGKHL LSDTVKK+VEDKVGKAVQK +HLVR VDVRLSVRG E
Sbjct: 74  IRMSWDGP-LSSVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGE 132

Query: 449 L-KGQKLRRCEVTLFTKKHGVVRAEEDAESLYGSIDLVSSIIQRKLRKIKEKDSDHGRHM 625
           L KG ++RRCEVTLFTK+HGVVRAEEDAE+++ SIDLVSSIIQRKLRKIK+K+SDHGRHM
Sbjct: 133 LGKGPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGRHM 192

Query: 626 KGFNRLKVRXXXXXXXXXXXXXXXXF----DY--QLVRTKSFEMPPLTVAEALEQLELVH 787
           KGFNRLKVR                     DY  ++VRTK F+MPPLTV+EA+EQLE VH
Sbjct: 193 KGFNRLKVREPMHQVVVEDDADEVSQQEDEDYIEEVVRTKYFDMPPLTVSEAIEQLEHVH 252

Query: 788 HDFYGFRNEETGEINIVYKRNHGGYGLIVPKGGGKAEKIEDLVVEQAT*PSPLE 949
           HDFYGFR+EETGEINI+YKR  GGYGLI+PKG G+AE++E LVVE A  PS  E
Sbjct: 253 HDFYGFRDEETGEINIIYKRKAGGYGLIIPKGNGEAERLEPLVVEPAREPSLAE 306


>ref|XP_002321945.1| predicted protein [Populus trichocarpa] gi|222868941|gb|EEF06072.1|
           predicted protein [Populus trichocarpa]
          Length = 231

 Score =  316 bits (809), Expect = 9e-84
 Identities = 169/232 (72%), Positives = 190/232 (81%), Gaps = 7/232 (3%)
 Frame = +2

Query: 275 MSWDGPGLSSVKLIIQGKHLTLSDTVKKYVEDKVGKAVQKHTHLVREVDVRLSVRGDEL- 451
           MSWDGP LSSVKLIIQGKHL LSDTVKK+VEDKVGKAVQK +HLVR VDVRLSVRG EL 
Sbjct: 1   MSWDGP-LSSVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGELG 59

Query: 452 KGQKLRRCEVTLFTKKHGVVRAEEDAESLYGSIDLVSSIIQRKLRKIKEKDSDHGRHMKG 631
           KG ++RRCEVTLFTK+HGVVRAEEDAE+++ SIDLVSSIIQRKLRKIK+K+SDHGRHMKG
Sbjct: 60  KGPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGRHMKG 119

Query: 632 FNRLKVRXXXXXXXXXXXXXXXXF----DY--QLVRTKSFEMPPLTVAEALEQLELVHHD 793
           FNRLKVR                     DY  ++VRTK F+MPPLTV+EA+EQLE VHHD
Sbjct: 120 FNRLKVREPMHQVVVEDDADEVSQQEDEDYIEEVVRTKYFDMPPLTVSEAIEQLEHVHHD 179

Query: 794 FYGFRNEETGEINIVYKRNHGGYGLIVPKGGGKAEKIEDLVVEQAT*PSPLE 949
           FYGFR+EETGEINI+YKR  GGYGLI+PKG G+AE++E LVVE A  PS  E
Sbjct: 180 FYGFRDEETGEINIIYKRKAGGYGLIIPKGNGEAERLEPLVVEPAREPSLAE 231


>ref|XP_002524427.1| Plastid-specific 30S ribosomal protein 1, chloroplast precursor,
           putative [Ricinus communis] gi|223536311|gb|EEF37962.1|
           Plastid-specific 30S ribosomal protein 1, chloroplast
           precursor, putative [Ricinus communis]
          Length = 311

 Score =  315 bits (807), Expect = 2e-83
 Identities = 175/263 (66%), Positives = 203/263 (77%), Gaps = 14/263 (5%)
 Frame = +2

Query: 203 TLYLSPQLEVSSS-----NKKNRTPQVVKMSWDGPGLSSVKLIIQGKHLTLSDTVKKYVE 367
           T +L+P L++ S+     NK+ R    V+MSW+GP LSSVKLI QGK+L L+DTVKK+VE
Sbjct: 52  TSFLNP-LKLGSNVKYFENKRGRR-SAVRMSWEGP-LSSVKLITQGKNLELTDTVKKHVE 108

Query: 368 DKVGKAVQKHTHLVREVDVRLSVRGDEL-KGQKLRRCEVTLFTKKHGVVRAEEDAESLYG 544
           DKVGKAVQKH+HLVREVDVRLSVRG E  KG K+RRCEVTLFTKKHGV+RAEEDAE++Y 
Sbjct: 109 DKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPKIRRCEVTLFTKKHGVIRAEEDAETIYA 168

Query: 545 SIDLVSSIIQRKLRKIKEKDSDHGRHMKGFNRLKVRXXXXXXXXXXXXXXXXF------D 706
           SIDLVSSIIQRKLRKIKEK SDHGRHMKGFNRLKVR                       D
Sbjct: 169 SIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVAEPVKDDTDEVDGVLGDEDED 228

Query: 707 Y--QLVRTKSFEMPPLTVAEALEQLELVHHDFYGFRNEETGEINIVYKRNHGGYGLIVPK 880
           Y  ++VRTK F+MPPLTV+EA+EQL+ V HDFYGFRNEETGEINI+YKR  GGYG+I+PK
Sbjct: 229 YIDEVVRTKYFDMPPLTVSEAIEQLKNVDHDFYGFRNEETGEINIIYKRKAGGYGIIIPK 288

Query: 881 GGGKAEKIEDLVVEQAT*PSPLE 949
             GKAEK+E +V+E A  PS  E
Sbjct: 289 ENGKAEKLEPVVIEPAREPSIAE 311


>ref|XP_002317839.1| predicted protein [Populus trichocarpa] gi|222858512|gb|EEE96059.1|
           predicted protein [Populus trichocarpa]
          Length = 306

 Score =  313 bits (803), Expect = 5e-83
 Identities = 169/251 (67%), Positives = 193/251 (76%), Gaps = 11/251 (4%)
 Frame = +2

Query: 209 YLSPQLEVSSSNKKNRTPQV-----VKMSWDGPGLSSVKLIIQGKHLTLSDTVKKYVEDK 373
           +L   +      +  RTP       VKMSWDGP L SVKLIIQGK+L L+DTVK++VEDK
Sbjct: 50  FLGKNMSFIELGRTARTPLTHGGCSVKMSWDGP-LHSVKLIIQGKNLELTDTVKRHVEDK 108

Query: 374 VGKAVQKHTHLVREVDVRLSVRGDEL-KGQKLRRCEVTLFTKKHGVVRAEEDAESLYGSI 550
           VGKAVQKH+HLVREVDVRLSVRG EL KG ++RRCEVTLFT +HGVVRAEEDAE++Y SI
Sbjct: 109 VGKAVQKHSHLVREVDVRLSVRGGELGKGPRIRRCEVTLFTNRHGVVRAEEDAETIYASI 168

Query: 551 DLVSSIIQRKLRKIKEKDSDHGRHMKGFNRLKVRXXXXXXXXXXXXXXXXFDY-----QL 715
           DLVSSIIQRKLRKIKEK+SDHGRHMKGFNRLKVR                 +      ++
Sbjct: 169 DLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVPQVVEGDADEVSQQEVEDSIEEV 228

Query: 716 VRTKSFEMPPLTVAEALEQLELVHHDFYGFRNEETGEINIVYKRNHGGYGLIVPKGGGKA 895
           VRTK F+MPPLTV+EA+EQLE V HDFYGFRNEETGEINIVYKR  GGYGLI+PKG  +A
Sbjct: 229 VRTKFFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIPKGNDEA 288

Query: 896 EKIEDLVVEQA 928
           E++E LVVE A
Sbjct: 289 ERLEPLVVEPA 299


>ref|XP_003634154.1| PREDICTED: 30S ribosomal protein 1, chloroplastic-like [Vitis
           vinifera]
          Length = 298

 Score =  311 bits (796), Expect = 3e-82
 Identities = 165/248 (66%), Positives = 197/248 (79%), Gaps = 6/248 (2%)
 Frame = +2

Query: 224 LEVSSSNKKNRTPQVVKMSWDGPGLSSVKLIIQGKHLTLSDTVKKYVEDKVGKAVQKHTH 403
           L+++++ ++ + P  V+MSWDGP LSSVKLI+QGK+L L+DTV+ +VE+KVGKAVQKH+H
Sbjct: 53  LKLNATTRQTK-PLAVRMSWDGP-LSSVKLILQGKNLELTDTVRSHVEEKVGKAVQKHSH 110

Query: 404 LVREVDVRLSVRGDEL-KGQKLRRCEVTLFTKKHGVVRAEEDAESLYGSIDLVSSIIQRK 580
           LVREVDVRLS+RG EL KG K+RRCEVTLFTKKHGVVRAEE AE+LYGSID+VSSIIQRK
Sbjct: 111 LVREVDVRLSIRGGELGKGPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRK 170

Query: 581 LRKIKEKDSDHGRHMKGFNRLKVRXXXXXXXXXXXXXXXXFD-----YQLVRTKSFEMPP 745
           LRKIKEKDSDHGRHMKGFNRLKVR                 +      ++VRTK F+MPP
Sbjct: 171 LRKIKEKDSDHGRHMKGFNRLKVRDPETPLVEEEADVVPQKEDGDLINEIVRTKYFDMPP 230

Query: 746 LTVAEALEQLELVHHDFYGFRNEETGEINIVYKRNHGGYGLIVPKGGGKAEKIEDLVVEQ 925
           LTV EA+EQLE V HDF+GFRNEETGEINI+YKR  GGYGLI+PK  GK E++E +VV+ 
Sbjct: 231 LTVPEAVEQLENVDHDFFGFRNEETGEINILYKRKAGGYGLIIPKENGKTEELEPVVVKS 290

Query: 926 AT*PSPLE 949
              PS  E
Sbjct: 291 DREPSLAE 298