BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003587
         (1032 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269250.1| PREDICTED: KH domain-containing protein At4g...   131   3e-43
ref|XP_002310483.1| predicted protein [Populus trichocarpa] gi|2...   105   6e-36
ref|XP_004137060.1| PREDICTED: KH domain-containing protein At4g...   105   4e-34
ref|XP_004165366.1| PREDICTED: KH domain-containing protein At4g...   105   4e-34
ref|XP_002522689.1| Poly(rC)-binding protein, putative [Ricinus ...   105   5e-32

>ref|XP_002269250.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
           vinifera]
          Length = 648

 Score =  131 bits (330), Expect(2) = 3e-43
 Identities = 81/198 (40%), Positives = 108/198 (54%)
 Frame = +2

Query: 71  MDGSFISPPAKRQYHNLSTTMQELHPXXXXXXXXXXXXXXXXXXXXXXXXXXXPHGHTAL 250
           M+ SF+SPPAKR  +  +T M +  P                           P GH A 
Sbjct: 1   MEASFLSPPAKRSIYT-ATGMPDPIPMAYAPNGSSKRSKPPPPPIPV------PAGHVAF 53

Query: 251 RLLCHXXXXXXXXXXXXXXXXLFRQETGAKIRIEEPVNACDERIILVVAQENPKKIITLK 430
           RLLCH                  + +TGA+IR+E+  +  D R+ILV+A  +  + I L+
Sbjct: 54  RLLCHASRIGGVIGKSGVIVKQLQSDTGARIRVEDSPSTSDHRVILVIAPASVNRRIALQ 113

Query: 431 GLNDEEDESGDEYEVSPAQEAFLRVFERILDVEAESEGIFPPPGGNVSCRMLAVTSQIGG 610
           G       S +E E S AQEA LRVFERIL+V A  +G+  PPGG VSCR+LA TSQ+G 
Sbjct: 114 G-------SSEEVEASAAQEAVLRVFERILEVAAVVDGV--PPGGVVSCRLLAETSQVGS 164

Query: 611 VMGKGGKNIEKVRKESGA 664
           V+GKGGK +EK+R+ESG+
Sbjct: 165 VIGKGGKVVEKIRRESGS 182



 Score = 70.9 bits (172), Expect(2) = 3e-43
 Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 6/97 (6%)
 Frame = +1

Query: 745  KIRVMPSDQRPACASSGDEVIQILGDVFAVKKALIAISRRLQDNPPTEKAQAAGSRPVGT 924
            KI+V+ +++ P CA+S DE+++I GDV AVKKAL+A+SRRLQD P  +K +  G RP+  
Sbjct: 183  KIKVLTAEKLPTCAASTDEMVEIEGDVLAVKKALVAVSRRLQDCPNVDKTKLIGGRPLEV 242

Query: 925  L-HGAFPEAYAEL-PHRSSLIQP----TIGTLQGTFP 1017
            +   + P+   +L   R S++ P    TI    G+ P
Sbjct: 243  VPQQSLPDPRVDLFQQRGSVLPPIPSNTISYASGSRP 279



 Score = 67.4 bits (163), Expect(2) = 8e-17
 Identities = 41/115 (35%), Positives = 56/115 (48%)
 Frame = +2

Query: 320 RQETGAKIRIEEPVNACDERIILVVAQENPKKIITLKGLNDEEDESGDEYEVSPAQEAFL 499
           + E GA I +  PV  CDER+I + A ENP                  E   SPAQ   +
Sbjct: 325 QNEAGASISVGAPVAECDERLITITASENP------------------ESRYSPAQNGVI 366

Query: 500 RVFERILDVEAESEGIFPPPGGNVSCRMLAVTSQIGGVMGKGGKNIEKVRKESGA 664
            VF R ++   E        G  VS R++  ++Q+G +MGKGG  I ++RK SGA
Sbjct: 367 LVFNRSIEAGIEKGLDSGSKGSPVSARLVVPSNQVGCLMGKGGTIISEMRKASGA 421



 Score = 46.6 bits (109), Expect(2) = 8e-17
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = +1

Query: 748 IRVMPSDQRPACASSGDEVIQILGDVFAVKKALIAISRRLQDNP-PTEKAQAAGSRPVGT 924
           IR++ SDQ P CAS  D+V+QI G+   V+  L  I+ RL+DN  P++    AG R    
Sbjct: 423 IRIIGSDQVPKCASENDQVVQISGEFVNVQDGLYHITGRLRDNLFPSKTLNGAGIRSSSA 482

Query: 925 LHGAFP 942
           ++   P
Sbjct: 483 MNEISP 488


>ref|XP_002310483.1| predicted protein [Populus trichocarpa] gi|222853386|gb|EEE90933.1|
           predicted protein [Populus trichocarpa]
          Length = 747

 Score =  105 bits (263), Expect(2) = 6e-36
 Identities = 70/193 (36%), Positives = 94/193 (48%)
 Frame = +2

Query: 83  FISPPAKRQYHNLSTTMQELHPXXXXXXXXXXXXXXXXXXXXXXXXXXXPHGHTALRLLC 262
           F+SPPAKR  +  ST + + +P                           P GH   RLLC
Sbjct: 8   FLSPPAKRPVY-YSTILPDPNPNSTNGYSANKRSKPHPSTSAAPSPV--PSGHVLFRLLC 64

Query: 263 HXXXXXXXXXXXXXXXXLFRQETGAKIRIEEPVNACDERIILVVAQENPKKIITLKGLND 442
           H                  +Q+TGAKIRIE+      +R+I +V       ++   G+  
Sbjct: 65  HDSRIGGIIGKGGNIIKGLQQQTGAKIRIEDAPLESPDRVITIVGSVTQSSVV-FSGI-- 121

Query: 443 EEDESGDEYEVSPAQEAFLRVFERILDVEAESEGIFPPPGGNVSCRMLAVTSQIGGVMGK 622
                G   EVS  QEA +RVFERIL+V AES+ +    GG VSCR+LA  S +G V+GK
Sbjct: 122 -----GSAIEVSKGQEALVRVFERILEVAAESDSV---AGGLVSCRLLAEISSVGAVIGK 173

Query: 623 GGKNIEKVRKESG 661
           GGK +EK+RK+ G
Sbjct: 174 GGKTVEKIRKDCG 186



 Score = 72.4 bits (176), Expect(2) = 6e-36
 Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
 Frame = +1

Query: 745 KIRVMPSDQRPACASSGDEVIQILGDVFAVKKALIAISRRLQDNPPTEKAQAAGSRPVGT 924
           K++V+  D+ PACASS +E+I+I GDV AVKK L+A+S RLQD  P +K +   S+PV  
Sbjct: 188 KVKVL-IDKLPACASSNEEMIEIEGDVSAVKKGLVAVSHRLQDCQPVDKTRVISSKPVEA 246

Query: 925 L-HGAFPEAYAELPHRSSLIQPTI 993
           +   +FPE   E+  + S ++PTI
Sbjct: 247 VSRVSFPEVGVEILPQHSAVRPTI 270



 Score = 61.2 bits (147), Expect(2) = 1e-12
 Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
 Frame = +2

Query: 230 PHGHTALRLLCHXXXXXXXXXXXXXXXXLFRQETGAKIRIEEPVNACDERIILVVAQENP 409
           P      R+LC+                  + ETGA I I   V  CDER+I V A ENP
Sbjct: 309 PQQQVVFRILCNNDRVGGVIGKGGNIVTALQNETGATISIGPKVAGCDERLITVTASENP 368

Query: 410 KKIITLKGLNDEEDESGDEYEVSPAQEAFLRVFERILDVEAESEGIFP--PPGGNVSCRM 583
                             E   S AQ+  + VF R+++   E +G+ P    G  VS R+
Sbjct: 369 ------------------ESRYSAAQKTVVLVFSRVVESVIE-KGLDPGSSEGSPVSVRL 409

Query: 584 LAVTSQIGGVMGKGGKNIEKVRK 652
           +   +Q+G ++GKGG  I ++RK
Sbjct: 410 VVSPNQVGCLLGKGGTIISEMRK 432



 Score = 38.5 bits (88), Expect(2) = 1e-12
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 748 IRVMPSDQ-RPACASSGDEVIQILGDVFAVKKALIAISRRLQDN 876
           IR++  DQ  P C    D V++ILGD   VK ++  I+ RL+DN
Sbjct: 438 IRIIGRDQGNPKCVPENDHVVEILGDFLNVKDSIYHITGRLRDN 481


>ref|XP_004137060.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
           sativus]
          Length = 658

 Score =  105 bits (262), Expect(2) = 4e-34
 Identities = 60/145 (41%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
 Frame = +2

Query: 230 PHGHTALRLLCHXXXXXXXXXXXXXXXXLFRQETGAKIRIEEPVNACDERIILVVAQENP 409
           P GH A R+LCH                  +Q TG KIR+EE  +   +R++ V+     
Sbjct: 49  PPGHVAFRMLCHASRIGGVIGKSGFVIKQLQQSTGVKIRVEEAPSESPDRVVTVIGSP-- 106

Query: 410 KKIITLKGLNDEEDESGDEYEVSPAQEAFLRVFERILDVEAESEGI-FPPPGGNVSCRML 586
             + +   L      SG+E E S AQE  L+VFERIL+V AE EG+      G V CR+L
Sbjct: 107 -ALTSRVFLEQNSGASGEEVEASKAQEGLLKVFERILEVAAEIEGVEVGAEVGVVYCRLL 165

Query: 587 AVTSQIGGVMGKGGKNIEKVRKESG 661
           A  +Q+G V+GKGGK +EK+RKESG
Sbjct: 166 ADVAQVGSVIGKGGKVVEKIRKESG 190



 Score = 66.6 bits (161), Expect(2) = 4e-34
 Identities = 36/90 (40%), Positives = 57/90 (63%)
 Frame = +1

Query: 745  KIRVMPSDQRPACASSGDEVIQILGDVFAVKKALIAISRRLQDNPPTEKAQAAGSRPVGT 924
            +IRV+ +D+ PACA   DE+I+I GDV+A+KKAL+A+SRRLQD PP+EK     +  V  
Sbjct: 192  RIRVL-TDKLPACAGPSDEMIEIEGDVWAIKKALLAVSRRLQDCPPSEKRTVRPAEAV-- 248

Query: 925  LHGAFPEAYAELPHRSSLIQPTIGTLQGTF 1014
            +H   P+ + +   + + + P + +    F
Sbjct: 249  IHETLPDLHMDHILQRNSVLPILPSSSNIF 278



 Score = 61.2 bits (147), Expect(2) = 2e-16
 Identities = 38/114 (33%), Positives = 56/114 (49%)
 Frame = +2

Query: 320 RQETGAKIRIEEPVNACDERIILVVAQENPKKIITLKGLNDEEDESGDEYEVSPAQEAFL 499
           + E+GA + +   V  CDER+I + A EN                   E   SPAQ+A +
Sbjct: 330 QNESGATVSVGPSVTGCDERLISITASENI------------------ESRYSPAQKAVV 371

Query: 500 RVFERILDVEAESEGIFPPPGGNVSCRMLAVTSQIGGVMGKGGKNIEKVRKESG 661
            VF R +DV  E        G  V  R++  ++Q+G V+GKGG  I ++RK +G
Sbjct: 372 LVFSRSVDVAIEKWQESSSKGSPVVARLVVPSNQVGCVLGKGGVIISEIRKVTG 425



 Score = 51.6 bits (122), Expect(2) = 2e-16
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
 Frame = +1

Query: 748  IRVMPSDQRPACASSGDEVIQILGDVFAVKKALIAISRRLQDNPPTEKAQAAGSRPVGTL 927
            IR++ SDQ P CA+  DE++QI G+   V+ AL  ++ RL+DN  +     +G+R  G  
Sbjct: 428  IRIISSDQVPNCAAESDEIVQISGEFSNVQDALYNVTGRLRDNLFSSVLSNSGTRNGGGT 487

Query: 928  HGAFPEA--YAELPHRSSLIQPT-IGTLQGTF 1014
               +PE   Y  +   + L++ T +GT  G+F
Sbjct: 488  -SVYPETSPYGRVRDTAPLVRSTPVGTSHGSF 518


>ref|XP_004165366.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
           sativus]
          Length = 643

 Score =  105 bits (262), Expect(2) = 4e-34
 Identities = 60/145 (41%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
 Frame = +2

Query: 230 PHGHTALRLLCHXXXXXXXXXXXXXXXXLFRQETGAKIRIEEPVNACDERIILVVAQENP 409
           P GH A R+LCH                  +Q TG KIR+EE  +   +R++ V+     
Sbjct: 54  PPGHVAFRMLCHASRIGGVIGKSGFVIKQLQQSTGVKIRVEEAPSESPDRVVTVIGSP-- 111

Query: 410 KKIITLKGLNDEEDESGDEYEVSPAQEAFLRVFERILDVEAESEGI-FPPPGGNVSCRML 586
             + +   L      SG+E E S AQE  L+VFERIL+V AE EG+      G V CR+L
Sbjct: 112 -ALTSRVFLEQNSGASGEEVEASKAQEGLLKVFERILEVAAEIEGVEVGAEVGVVYCRLL 170

Query: 587 AVTSQIGGVMGKGGKNIEKVRKESG 661
           A  +Q+G V+GKGGK +EK+RKESG
Sbjct: 171 ADVAQVGSVIGKGGKVVEKIRKESG 195



 Score = 66.6 bits (161), Expect(2) = 4e-34
 Identities = 36/90 (40%), Positives = 57/90 (63%)
 Frame = +1

Query: 745  KIRVMPSDQRPACASSGDEVIQILGDVFAVKKALIAISRRLQDNPPTEKAQAAGSRPVGT 924
            +IRV+ +D+ PACA   DE+I+I GDV+A+KKAL+A+SRRLQD PP+EK     +  V  
Sbjct: 197  RIRVL-TDKLPACAGPSDEMIEIEGDVWAIKKALLAVSRRLQDCPPSEKRTVRPAEAV-- 253

Query: 925  LHGAFPEAYAELPHRSSLIQPTIGTLQGTF 1014
            +H   P+ + +   + + + P + +    F
Sbjct: 254  IHETLPDLHMDHILQRNSVLPILPSSSNIF 283



 Score = 61.2 bits (147), Expect(2) = 8e-17
 Identities = 38/114 (33%), Positives = 56/114 (49%)
 Frame = +2

Query: 320 RQETGAKIRIEEPVNACDERIILVVAQENPKKIITLKGLNDEEDESGDEYEVSPAQEAFL 499
           + E+GA + +   V  CDER+I + A EN                   E   SPAQ+A +
Sbjct: 335 QNESGATVSVGPSVTGCDERLISITASENI------------------ESRYSPAQKAVV 376

Query: 500 RVFERILDVEAESEGIFPPPGGNVSCRMLAVTSQIGGVMGKGGKNIEKVRKESG 661
            VF R +DV  E        G  V  R++  ++Q+G V+GKGG  I ++RK +G
Sbjct: 377 LVFSRSVDVAIEKWQESSSKGSPVVARLVVPSNQVGCVLGKGGVIISEIRKVTG 430



 Score = 52.8 bits (125), Expect(2) = 8e-17
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
 Frame = +1

Query: 748 IRVMPSDQRPACASSGDEVIQILGDVFAVKKALIAISRRLQDN-------PPTEKAQAAG 906
           IR++ SDQ P CA+  DE++QI G+   V+ AL  ++ RL+DN          + A    
Sbjct: 433 IRIISSDQVPNCAAESDEIVQISGEFSNVQDALYNVTGRLRDNLFLVPYGRVRDTAPLVR 492

Query: 907 SRPVGTLHGAF 939
           S PVGT HG+F
Sbjct: 493 STPVGTSHGSF 503


>ref|XP_002522689.1| Poly(rC)-binding protein, putative [Ricinus communis]
           gi|223538165|gb|EEF39776.1| Poly(rC)-binding protein,
           putative [Ricinus communis]
          Length = 698

 Score =  105 bits (263), Expect(2) = 5e-32
 Identities = 70/199 (35%), Positives = 97/199 (48%), Gaps = 2/199 (1%)
 Frame = +2

Query: 71  MDGSFISPPAKRQYHNLSTTMQELHPXXXXXXXXXXXXXXXXXXXXXXXXXXXPHGHTAL 250
           M  +F+ PP+KR     +  M + +P                           P GH + 
Sbjct: 1   MGSNFLYPPSKRPIQYNAAGMPDPNPTANGLSNKRPKQPPANQNAAAPLPL--PPGHVSF 58

Query: 251 RLLCHXXXXXXXXXXXXXXXXLFRQETGAKIRIEEPVNACDERIILVVAQENPKKIITLK 430
           RLLCH                  +Q++GAKIRIEE      +R+I V+A+      + ++
Sbjct: 59  RLLCHASRIGGIIGKSGTIIKQLQQQSGAKIRIEESPAESSDRVITVIAEGQIVSKVRVE 118

Query: 431 GLNDEEDESGDEYEVSPAQEAFLRVFERILDVEAESEGIFPPPGGN--VSCRMLAVTSQI 604
                     +E +VS AQE  +RVFERIL+V AES+GI    GG   VSCRMLA + Q 
Sbjct: 119 S---------EEVDVSRAQEGLIRVFERILEVAAESDGINVVAGGGGVVSCRMLAGSKQA 169

Query: 605 GGVMGKGGKNIEKVRKESG 661
           G V+GKGGK +EK+RK+ G
Sbjct: 170 GSVIGKGGKVVEKIRKDCG 188



 Score = 59.3 bits (142), Expect(2) = 5e-32
 Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
 Frame = +1

Query: 745 KIRVMPSDQRPACASSGDEVIQILGDVFAVKKALIAISRRLQDNPPTEKAQAAGSRPVGT 924
           KIRV+ +D+ P CA   +E+I+I GD+ +VKKALIA+SR LQD  P +K +   S+    
Sbjct: 190 KIRVL-TDKLPVCAGPNEEMIEIEGDILSVKKALIAVSRCLQDCQPVDKPRVGSSKYFEA 248

Query: 925 L-HGAFPEAYAELPHRSSLIQPTI 993
           +     PE   E+  + +++ PT+
Sbjct: 249 VPQEPLPEMRVEIAPQRNIMVPTM 272



 Score = 44.3 bits (103), Expect(2) = 1e-08
 Identities = 27/95 (28%), Positives = 44/95 (46%)
 Frame = +1

Query: 748  IRVMPSDQRPACASSGDEVIQILGDVFAVKKALIAISRRLQDNPPTEKAQAAGSRPVGTL 927
            I+++  DQ P C    ++V+QI GD   VK A+  ++ RL+DN  +       +R    +
Sbjct: 407  IKILAGDQLPKCVPENEQVVQISGDFMNVKDAVYHVTGRLRDNLFSSALSTPVTRSTTVI 466

Query: 928  HGAFPEAYAELPHRSSLIQPTIGTLQGTFPEVYGE 1032
              A P    + P R +  +P       TF E  G+
Sbjct: 467  TEASPYGRLKEPLRDAFKEPL-----NTFREPLGD 496



 Score = 42.0 bits (97), Expect(2) = 1e-08
 Identities = 33/114 (28%), Positives = 48/114 (42%)
 Frame = +2

Query: 320 RQETGAKIRIEEPVNACDERIILVVAQENPKKIITLKGLNDEEDESGDEYEVSPAQEAFL 499
           + ETGA I I   +   DER+I V+A ENP                  E   S AQ+A +
Sbjct: 331 QNETGASITIGATIAESDERLITVIASENP------------------ESRYSAAQKAVV 372

Query: 500 RVFERILDVEAESEGIFPPPGGNVSCRMLAVTSQIGGVMGKGGKNIEKVRKESG 661
            VF                       R++  ++Q+G ++GKGG  I  +RK +G
Sbjct: 373 LVFS----------------------RLVVPSNQVGCLLGKGGIIISDMRKTTG 404