BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003526
         (1137 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524966.1| sigma factor sigb regulation protein rsbq, p...   446   e-123
ref|XP_002284043.1| PREDICTED: sigma factor sigB regulation prot...   445   e-123
ref|NP_001050445.1| Os03g0437600 [Oryza sativa Japonica Group] g...   444   e-122
gb|AFK41000.1| unknown [Medicago truncatula]                          441   e-121
ref|XP_003608457.1| Sigma factor sigB regulation protein rsbQ [M...   441   e-121

>ref|XP_002524966.1| sigma factor sigb regulation protein rsbq, putative [Ricinus
            communis] gi|223535801|gb|EEF37463.1| sigma factor sigb
            regulation protein rsbq, putative [Ricinus communis]
          Length = 270

 Score =  446 bits (1148), Expect = e-123
 Identities = 216/270 (80%), Positives = 245/270 (90%)
 Frame = -3

Query: 1000 MGIVEEAHNLRVLGTGEKIIVLAHGFGTDQSVWKHLVPHLVNEYRVVLFDNMGAGPTNPD 821
            MGIVEEAHN+++LGTGE++IVLAHGFGTDQSVWKHLVPHL+++++VVLFDNMGAG TNPD
Sbjct: 1    MGIVEEAHNVKILGTGEQVIVLAHGFGTDQSVWKHLVPHLIDDFKVVLFDNMGAGTTNPD 60

Query: 820  YFDFERYSTLEGYAYDLLAILEELQVGSCIFXXXXXXXXXXXXXXINRPDLFSKLVLISA 641
            YFDFERY+ LEGYAYDLLAILEELQV SC+F              I+RPDLF+K+V+ISA
Sbjct: 61   YFDFERYAGLEGYAYDLLAILEELQVESCVFVGHSVSAMVGVVASISRPDLFTKIVMISA 120

Query: 640  SPRYLNDADYYGGFEQEDLDQLFEAIGSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN 461
            SPRYLND DYYGGFEQEDL+QLFEA+ +NYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN
Sbjct: 121  SPRYLNDVDYYGGFEQEDLNQLFEAMEANYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN 180

Query: 460  IRPDIALSVAQTIFQSDLRHALALVSVPCHILQSTKDLAVPVVVSEYLHRHLGSESIVEV 281
            +RPDIALSVAQTIFQSD+R  L +VSVPCHI+QS KDLAVPVVVSEYLH++LGSESI EV
Sbjct: 181  MRPDIALSVAQTIFQSDMRSILHMVSVPCHIVQSGKDLAVPVVVSEYLHQNLGSESIAEV 240

Query: 280  MSSDGHLPQLSSPDIVVPVLLRHIRHDIEA 191
            MS+DGHLPQLSSPD+V+PVLLRHIRH+I A
Sbjct: 241  MSTDGHLPQLSSPDVVIPVLLRHIRHNITA 270


>ref|XP_002284043.1| PREDICTED: sigma factor sigB regulation protein rsbQ [Vitis vinifera]
            gi|147783136|emb|CAN70905.1| hypothetical protein
            VITISV_044176 [Vitis vinifera]
            gi|147795384|emb|CAN74235.1| hypothetical protein
            VITISV_040226 [Vitis vinifera]
          Length = 270

 Score =  445 bits (1145), Expect = e-123
 Identities = 220/268 (82%), Positives = 240/268 (89%)
 Frame = -3

Query: 1000 MGIVEEAHNLRVLGTGEKIIVLAHGFGTDQSVWKHLVPHLVNEYRVVLFDNMGAGPTNPD 821
            MGIVEEAHNL+V+G+GE+IIVLAHGFGTDQS+WKHLVPHLV++YRV+LFDNMGAG TNP+
Sbjct: 1    MGIVEEAHNLKVVGSGEQIIVLAHGFGTDQSLWKHLVPHLVDDYRVILFDNMGAGTTNPE 60

Query: 820  YFDFERYSTLEGYAYDLLAILEELQVGSCIFXXXXXXXXXXXXXXINRPDLFSKLVLISA 641
            YFDFERYS LEGYAYD+LAILEELQV SCIF              I RPDLFSKL+ I+ 
Sbjct: 61   YFDFERYSNLEGYAYDVLAILEELQVQSCIFVGHSVSAMIGAIASITRPDLFSKLISING 120

Query: 640  SPRYLNDADYYGGFEQEDLDQLFEAIGSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN 461
            SPRYLND DYYGGFEQEDLDQLFEA+GSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN
Sbjct: 121  SPRYLNDVDYYGGFEQEDLDQLFEAMGSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN 180

Query: 460  IRPDIALSVAQTIFQSDLRHALALVSVPCHILQSTKDLAVPVVVSEYLHRHLGSESIVEV 281
            +RPDIALSVAQTIFQ DLR  L  V+VPCHILQS KDLAVPVVVSEYLH++LG ESIVEV
Sbjct: 181  MRPDIALSVAQTIFQVDLRQILCHVTVPCHILQSIKDLAVPVVVSEYLHQNLGGESIVEV 240

Query: 280  MSSDGHLPQLSSPDIVVPVLLRHIRHDI 197
            M+SDGHLPQLSSPDIVVPVLLRHIR++I
Sbjct: 241  MTSDGHLPQLSSPDIVVPVLLRHIRYNI 268


>ref|NP_001050445.1| Os03g0437600 [Oryza sativa Japonica Group]
            gi|108709023|gb|ABF96818.1| hydrolase, alpha/beta fold
            family protein, expressed [Oryza sativa Japonica Group]
            gi|113548916|dbj|BAF12359.1| Os03g0437600 [Oryza sativa
            Japonica Group] gi|215679017|dbj|BAG96447.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|215692426|dbj|BAG87846.1| unnamed protein product
            [Oryza sativa Japonica Group]
            gi|215737519|dbj|BAG96649.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 271

 Score =  444 bits (1142), Expect = e-122
 Identities = 219/269 (81%), Positives = 241/269 (89%), Gaps = 1/269 (0%)
 Frame = -3

Query: 1000 MGIVEEAHNLRVLGTGEK-IIVLAHGFGTDQSVWKHLVPHLVNEYRVVLFDNMGAGPTNP 824
            MGIVEEAHNLRV+G G++ +IVLAHGFGTDQSVWKHLVPHLV +YRVVLFD MGAGPTNP
Sbjct: 1    MGIVEEAHNLRVVGEGKRGVIVLAHGFGTDQSVWKHLVPHLVADYRVVLFDTMGAGPTNP 60

Query: 823  DYFDFERYSTLEGYAYDLLAILEELQVGSCIFXXXXXXXXXXXXXXINRPDLFSKLVLIS 644
            DYFDF RY+TLEGYA DLLAIL+EL+V SCI+              I+RPDLFSKLVL+S
Sbjct: 61   DYFDFSRYATLEGYALDLLAILQELRVASCIYVGHSVSAVIGAIASISRPDLFSKLVLLS 120

Query: 643  ASPRYLNDADYYGGFEQEDLDQLFEAIGSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLF 464
            ASPRYLND DYYGGFEQEDLD+LFEA+GSNYKAWCSGFAPL VGGDM+SVAVQEFSRTLF
Sbjct: 121  ASPRYLNDVDYYGGFEQEDLDELFEAMGSNYKAWCSGFAPLCVGGDMESVAVQEFSRTLF 180

Query: 463  NIRPDIALSVAQTIFQSDLRHALALVSVPCHILQSTKDLAVPVVVSEYLHRHLGSESIVE 284
            NIRPDIALSVAQTIFQSD+R  L LV+VPCHI+QSTKDLAVPVVVSEYLH+HLG +SIVE
Sbjct: 181  NIRPDIALSVAQTIFQSDVRSLLPLVTVPCHIVQSTKDLAVPVVVSEYLHKHLGGDSIVE 240

Query: 283  VMSSDGHLPQLSSPDIVVPVLLRHIRHDI 197
            VM S+GHLPQLSSPDIV+PVLLRHI+HDI
Sbjct: 241  VMPSEGHLPQLSSPDIVIPVLLRHIQHDI 269


>gb|AFK41000.1| unknown [Medicago truncatula]
          Length = 270

 Score =  441 bits (1135), Expect = e-121
 Identities = 210/270 (77%), Positives = 244/270 (90%)
 Frame = -3

Query: 1000 MGIVEEAHNLRVLGTGEKIIVLAHGFGTDQSVWKHLVPHLVNEYRVVLFDNMGAGPTNPD 821
            MGIVEEAHN++VLG+G + IVLAHGFGTDQSVWKHLVPHL++E+RV+L+DNMGAG TNPD
Sbjct: 1    MGIVEEAHNVKVLGSGSRFIVLAHGFGTDQSVWKHLVPHLLDEFRVILYDNMGAGTTNPD 60

Query: 820  YFDFERYSTLEGYAYDLLAILEELQVGSCIFXXXXXXXXXXXXXXINRPDLFSKLVLISA 641
            YFDFERYSTLEGYAYDLLAILEEL+V SCIF              I+RPDLF+K++LISA
Sbjct: 61   YFDFERYSTLEGYAYDLLAILEELRVDSCIFVGHSVSAMIGTVASISRPDLFNKIILISA 120

Query: 640  SPRYLNDADYYGGFEQEDLDQLFEAIGSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN 461
            SPRYLND DY+GGFEQEDLDQLF+A+ SNYK+WCSGFAP+AVGGDM+SVAVQEFSRTLFN
Sbjct: 121  SPRYLNDRDYFGGFEQEDLDQLFDAMASNYKSWCSGFAPMAVGGDMESVAVQEFSRTLFN 180

Query: 460  IRPDIALSVAQTIFQSDLRHALALVSVPCHILQSTKDLAVPVVVSEYLHRHLGSESIVEV 281
            +RPDIALSV QTIF+SD+R  L +V+VPCHI+QS KDLAVPVVV+EYLH+H+GSESIVEV
Sbjct: 181  MRPDIALSVLQTIFKSDMRQILCMVTVPCHIIQSMKDLAVPVVVAEYLHQHVGSESIVEV 240

Query: 280  MSSDGHLPQLSSPDIVVPVLLRHIRHDIEA 191
            MS++GHLPQLSSPD+VVPV+L+HIRHDI A
Sbjct: 241  MSTEGHLPQLSSPDVVVPVILKHIRHDIAA 270


>ref|XP_003608457.1| Sigma factor sigB regulation protein rsbQ [Medicago truncatula]
            gi|355509512|gb|AES90654.1| Sigma factor sigB regulation
            protein rsbQ [Medicago truncatula]
          Length = 270

 Score =  441 bits (1134), Expect = e-121
 Identities = 209/270 (77%), Positives = 244/270 (90%)
 Frame = -3

Query: 1000 MGIVEEAHNLRVLGTGEKIIVLAHGFGTDQSVWKHLVPHLVNEYRVVLFDNMGAGPTNPD 821
            MGIVEEAHN++VLG+G + IVLAHGFGTDQSVWKHLVPHL++E+RV+L+DNMGAG TNPD
Sbjct: 1    MGIVEEAHNVKVLGSGSRFIVLAHGFGTDQSVWKHLVPHLLDEFRVILYDNMGAGTTNPD 60

Query: 820  YFDFERYSTLEGYAYDLLAILEELQVGSCIFXXXXXXXXXXXXXXINRPDLFSKLVLISA 641
            YFDFERYSTLEGYAYDLLAILEEL+V SCIF              I+RPDLF+K++LISA
Sbjct: 61   YFDFERYSTLEGYAYDLLAILEELRVDSCIFVGHSVSAMIGTVASISRPDLFNKIILISA 120

Query: 640  SPRYLNDADYYGGFEQEDLDQLFEAIGSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN 461
            SPRYLND DY+GGFEQEDLDQLF+A+ SNYK+WCSGFAP+AVGGDM+SVAVQEFSRTLFN
Sbjct: 121  SPRYLNDRDYFGGFEQEDLDQLFDAMASNYKSWCSGFAPMAVGGDMESVAVQEFSRTLFN 180

Query: 460  IRPDIALSVAQTIFQSDLRHALALVSVPCHILQSTKDLAVPVVVSEYLHRHLGSESIVEV 281
            +RPDIALSV QTIF+SD+R  L +V+VPCHI+QS KDLAVPVVV+EYLH+H+GSESIVEV
Sbjct: 181  MRPDIALSVLQTIFKSDMRQILCMVTVPCHIIQSMKDLAVPVVVAEYLHQHVGSESIVEV 240

Query: 280  MSSDGHLPQLSSPDIVVPVLLRHIRHDIEA 191
            MS++GHLPQLSSPD+V+PV+L+HIRHDI A
Sbjct: 241  MSTEGHLPQLSSPDVVIPVILKHIRHDIAA 270