BLASTX nr result
ID: Coptis24_contig00003469
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00003469
(1896 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264290.1| PREDICTED: transcription initiation factor T... 765 0.0
ref|XP_002276969.1| PREDICTED: transcription initiation factor T... 757 0.0
emb|CBI26708.3| unnamed protein product [Vitis vinifera] 751 0.0
ref|XP_003518649.1| PREDICTED: transcription initiation factor T... 728 0.0
ref|NP_001043168.1| Os01g0510800 [Oryza sativa Japonica Group] g... 724 0.0
>ref|XP_002264290.1| PREDICTED: transcription initiation factor TFIID subunit 6 [Vitis
vinifera] gi|297739126|emb|CBI28777.3| unnamed protein
product [Vitis vinifera]
Length = 543
Score = 765 bits (1976), Expect = 0.0
Identities = 386/545 (70%), Positives = 440/545 (80%)
Frame = +1
Query: 49 MSIVPKETIEVIAQSIGINNLSPDVALALAPDVEYRMREIMQEAIKCMRHSKRTILTADD 228
MSIV KETIEVIAQSIGI NLS DVALALAPDVEYRMRE+MQEAIKCMRHSKRT+LT DD
Sbjct: 1 MSIVSKETIEVIAQSIGIANLSADVALALAPDVEYRMREVMQEAIKCMRHSKRTVLTTDD 60
Query: 229 VDSALNLRNVEPIYGFASGDPLRFKRAVGHKDLFYIDDKDVEFKDVIEAPIPKAPLDTAV 408
VD ALNLRNVEPIYGF SG PLRFKRAVGHK+LFYIDDKD++FKDVIEAP+PKAPLD AV
Sbjct: 61 VDIALNLRNVEPIYGFTSGGPLRFKRAVGHKNLFYIDDKDLDFKDVIEAPLPKAPLDAAV 120
Query: 409 VAHWLAIEGVQPAIPENAPVEALVAPSDNRKSEQKEDGLPVEIKLPIKHVLSRELQLYFD 588
V HWLAIEGVQPAIPENAPVE + APSD +K EQK+DGLPV+IKLPIKHVLSRELQLYFD
Sbjct: 121 VCHWLAIEGVQPAIPENAPVEVIAAPSDGKKFEQKDDGLPVDIKLPIKHVLSRELQLYFD 180
Query: 589 KITDLTVSRSDSVLFKEALASLATDSGLHPLVPYFTYYISDEVTRSLNNFPLLFALMRVV 768
KI DLTV+RSDS LFKEAL SLATDSGLHPLVPYFTY+ISDEV+R LN+F LLFALMRVV
Sbjct: 181 KIIDLTVNRSDSALFKEALVSLATDSGLHPLVPYFTYFISDEVSRGLNDFNLLFALMRVV 240
Query: 769 RSLLQNPHIHIEPYLHQLMPSVITCLVAKRLGNRFSDNHWELRNFTANLVTSICKRFGHV 948
SLLQNPHIHIEPYLHQLMPSV+TCLVAKR+GNR +DNHWELR+FTANLV SICKRFGHV
Sbjct: 241 WSLLQNPHIHIEPYLHQLMPSVVTCLVAKRIGNRLADNHWELRDFTANLVASICKRFGHV 300
Query: 949 YHNLQPRVTRTLLHAFLDPTKSLTQHYGAIQGLSALGPSVIRXXXXXXXXXXXXXXXXXX 1128
Y+NLQ R+T+TLLHAFLDP +S+TQHYGAIQGL+ALGP+++R
Sbjct: 301 YNNLQTRLTKTLLHAFLDPKRSMTQHYGAIQGLAALGPNMVRLLIVPNLEPYLRLLEPEM 360
Query: 1129 XXXKQKNEMKRHEAWRVYGSLLCASGQCMYDRLKLFPSLLSPPTRTVWRTTQRVATTMPN 1308
KQKNE+KRHEAW VYG+LL A+GQ +YDRLK+FP+L SPP R V+RT RV T+ PN
Sbjct: 361 LLEKQKNELKRHEAWCVYGALLRATGQSIYDRLKMFPALPSPPAR-VFRTNGRVVTSPPN 419
Query: 1309 KRKMSQEHLGQQPSLKRVATEGSTGALPATSMQTDMQLAADGFPATXXXXXXXXXXXLRQ 1488
KRK + EHL QQPSLK++AT+G +P T++ ++MQ P RQ
Sbjct: 420 KRKANNEHLEQQPSLKKIATDGPMDVVP-TNLSSNMQPPETKGPVPSTDPDMGPSSSSRQ 478
Query: 1489 VTNDKNSGGSSRREKSEARPPKMSIALAQAWKEDMDAGHLLASLFEFFGESILPFTPAAE 1668
+ + S R+ K ++R KMS L Q W++D+ +GHLL SLFE FGESILPF PA E
Sbjct: 479 IPHGNISDSRDRKGKGDSRALKMSAVLTQTWRDDLKSGHLLVSLFELFGESILPFIPAPE 538
Query: 1669 LSFFL 1683
+S FL
Sbjct: 539 MSLFL 543
>ref|XP_002276969.1| PREDICTED: transcription initiation factor TFIID subunit 6-like
[Vitis vinifera]
Length = 543
Score = 757 bits (1955), Expect = 0.0
Identities = 380/547 (69%), Positives = 438/547 (80%), Gaps = 2/547 (0%)
Frame = +1
Query: 49 MSIVPKETIEVIAQSIGINNLSPDVALALAPDVEYRMREIMQEAIKCMRHSKRTILTADD 228
MSIVPKETIEVIAQSIGI+N SPDVA ALA DVEYR+REIMQEAIKCMRHSKRTILT +D
Sbjct: 1 MSIVPKETIEVIAQSIGISNFSPDVAPALATDVEYRVREIMQEAIKCMRHSKRTILTVND 60
Query: 229 VDSALNLRNVEPIYGFASGDPLRFKRAVGHKDLFYIDDKDVEFKDVIEAPIPKAPLDTAV 408
VDSAL LRNVEP+YGF SG P +FKRA GHKDLFY+DDKDVEFKD+IEAP+PK PLDT V
Sbjct: 61 VDSALKLRNVEPLYGFTSGGPRQFKRAAGHKDLFYVDDKDVEFKDLIEAPLPKTPLDTGV 120
Query: 409 VAHWLAIEGVQPAIPENAPVEALVAPSDNRKSEQKEDGLPVEIKLPIKHVLSRELQLYFD 588
+ HWLAIEGVQPAI ENAP+EAL PSDN+KSE KEDGLPV+ KLP+KHVLSRELQLYFD
Sbjct: 121 ITHWLAIEGVQPAISENAPIEALAVPSDNKKSEYKEDGLPVDTKLPVKHVLSRELQLYFD 180
Query: 589 KITDLTVSRSDSVLFKEALASLATDSGLHPLVPYFTYYISDEVTRSLNNFPLLFALMRVV 768
KI +LT+SRSDS+LFKEAL SLATDSG+HPLVPYFTY+I+DEVTR+LN+F +LFALMRV
Sbjct: 181 KIKELTLSRSDSILFKEALVSLATDSGIHPLVPYFTYFIADEVTRNLNDFSILFALMRVA 240
Query: 769 RSLLQNPHIHIEPYLHQLMPSVITCLVAKRLGNRFSDNHWELRNFTANLVTSICKRFGHV 948
RSLLQN IHIEPYLHQLMPS+ITCLVAKRLG+RFSDNHWELR+FTANLV S+CKR+GHV
Sbjct: 241 RSLLQNQQIHIEPYLHQLMPSIITCLVAKRLGSRFSDNHWELRSFTANLVASVCKRYGHV 300
Query: 949 YHNLQPRVTRTLLHAFLDPTKSLTQHYGAIQGLSALGPSVIRXXXXXXXXXXXXXXXXXX 1128
YHNLQPRVTRTLLHAFLDPTK+L QHYGAIQGL+A GPSV+R
Sbjct: 301 YHNLQPRVTRTLLHAFLDPTKALPQHYGAIQGLAAFGPSVVRLLILPNLEPYLRLLEPEM 360
Query: 1129 XXXKQKNEMKRHEAWRVYGSLLCASGQCMYDRLKLFPSLLSPPTRTVWRTTQRVATTMPN 1308
KQKN MKRHEAWRVYG+LLCA+G CMYDRLK FP+LLSPPTR + ++ +++ T P+
Sbjct: 361 QLEKQKNGMKRHEAWRVYGALLCAAGTCMYDRLKTFPNLLSPPTRAILKSNKKILPTKPS 420
Query: 1309 KRKMSQEHLGQQPSLKRVATEGSTGALPATSMQTDMQLAADGFPAT--XXXXXXXXXXXL 1482
KRK S ++L QQP LK++AT+GS G +P S+ D Q GF +
Sbjct: 421 KRKASTDNLMQQPPLKKLATDGSMGVMPINSLAVDKQGLTGGFSTSTAVGSSDVGLSSMS 480
Query: 1483 RQVTNDKNSGGSSRREKSEARPPKMSIALAQAWKEDMDAGHLLASLFEFFGESILPFTPA 1662
+Q+ ++ SGG R + R K S LAQAWK D++AG L ASLFE+FGES+ FTP+
Sbjct: 481 QQLASENISGG---RREVGTRALKASAVLAQAWK-DVNAGQLSASLFEYFGESMFCFTPS 536
Query: 1663 AELSFFL 1683
ELS FL
Sbjct: 537 PELSLFL 543
>emb|CBI26708.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 751 bits (1939), Expect = 0.0
Identities = 380/551 (68%), Positives = 437/551 (79%), Gaps = 6/551 (1%)
Frame = +1
Query: 49 MSIVPKETIEVIAQSIGINNLSPDVALALAPDVEYRMREIMQEAIKCMRHSKRTILTADD 228
MSIVPKETIEVIAQSIGI+N SPDVA ALA DVEYR+REIMQEAIKCMRHSKRTILT +D
Sbjct: 1 MSIVPKETIEVIAQSIGISNFSPDVAPALATDVEYRVREIMQEAIKCMRHSKRTILTVND 60
Query: 229 VDSALNLRNVEPIYGFASGDPLRFKRAVGHKDLFYIDDKDVEFKDVIEAPIPKAPLDTAV 408
VDSAL LRNVEP+YGF SG P +FKRA GHKDLFY+DDKDVEFKD+IEAP+PK PLDT V
Sbjct: 61 VDSALKLRNVEPLYGFTSGGPRQFKRAAGHKDLFYVDDKDVEFKDLIEAPLPKTPLDTGV 120
Query: 409 VAHWLAIEGVQPAIPENAPVEALVAPSDNRKSEQKEDGLPVEIKLPIKHVLSRELQLYFD 588
+ HWLAIEGVQPAI ENAP+EAL PSDN+KSE KEDGLPV+ KLP+KHVLSRELQLYFD
Sbjct: 121 ITHWLAIEGVQPAISENAPIEALAVPSDNKKSEYKEDGLPVDTKLPVKHVLSRELQLYFD 180
Query: 589 KITDLTVSRSDSVLFKEALASLATDSGLHPLVPYFTYYISDEVTRSLNNFPLLFALMRVV 768
KI +LT+SRSDS+LFKEAL SLATDSG+HPLVPYFTY+I+DEVTR+LN+F +LFALMRV
Sbjct: 181 KIKELTLSRSDSILFKEALVSLATDSGIHPLVPYFTYFIADEVTRNLNDFSILFALMRVA 240
Query: 769 RSLLQNPHIHIEPYLHQLMPSVITCLVAKRLGNRFSDNHWELRNFTANLVTSICKRFGHV 948
RSLLQN IHIEPYLHQLMPS+ITCLVAKRLG+RFSDNHWELR+FTANLV S+CKR+GHV
Sbjct: 241 RSLLQNQQIHIEPYLHQLMPSIITCLVAKRLGSRFSDNHWELRSFTANLVASVCKRYGHV 300
Query: 949 YHNLQPRVTRTLLHAFLDPTKSLTQHYGAIQGLSALGPSVIRXXXXXXXXXXXXXXXXXX 1128
YHNLQPRVTRTLLHAFLDPTK+L QHYGAIQGL+A GPSV+R
Sbjct: 301 YHNLQPRVTRTLLHAFLDPTKALPQHYGAIQGLAAFGPSVVRLLILPNLEPYLRLLEPEM 360
Query: 1129 XXXKQKNEMKRHEAWRVYGSLLCASGQCMYDRLKLFPSLLSPPTRTVWRTTQRVATTM-- 1302
KQKN MKRHEAWRVYG+LLCA+G CMYDRLK FP+LLSPPTR + ++ +++ T
Sbjct: 361 QLEKQKNGMKRHEAWRVYGALLCAAGTCMYDRLKTFPNLLSPPTRAILKSNKKILPTKPK 420
Query: 1303 --PNKRKMSQEHLGQQPSLKRVATEGSTGALPATSMQTDMQLAADGFPAT--XXXXXXXX 1470
P KRK S ++L QQP LK++AT+GS G +P S+ D Q GF +
Sbjct: 421 INPGKRKASTDNLMQQPPLKKLATDGSMGVMPINSLAVDKQGLTGGFSTSTAVGSSDVGL 480
Query: 1471 XXXLRQVTNDKNSGGSSRREKSEARPPKMSIALAQAWKEDMDAGHLLASLFEFFGESILP 1650
+Q+ ++ SGG R + R K S LAQAWK D++AG L ASLFE+FGES+
Sbjct: 481 SSMSQQLASENISGG---RREVGTRALKASAVLAQAWK-DVNAGQLSASLFEYFGESMFC 536
Query: 1651 FTPAAELSFFL 1683
FTP+ ELS FL
Sbjct: 537 FTPSPELSLFL 547
>ref|XP_003518649.1| PREDICTED: transcription initiation factor TFIID subunit 6-like
[Glycine max]
Length = 544
Score = 728 bits (1878), Expect = 0.0
Identities = 369/545 (67%), Positives = 422/545 (77%)
Frame = +1
Query: 49 MSIVPKETIEVIAQSIGINNLSPDVALALAPDVEYRMREIMQEAIKCMRHSKRTILTADD 228
MSIVPKETIEVIAQSIGINNLS DVALA+APDVEYRMR+IMQEAIKCMRHSKRT LTADD
Sbjct: 1 MSIVPKETIEVIAQSIGINNLSHDVALAVAPDVEYRMRQIMQEAIKCMRHSKRTTLTADD 60
Query: 229 VDSALNLRNVEPIYGFASGDPLRFKRAVGHKDLFYIDDKDVEFKDVIEAPIPKAPLDTAV 408
VD+ALNL+NVEPIYGFASG PLRFKRAVGH+DLFYIDDKDV+ KDVIEA +PKAPLDTAV
Sbjct: 61 VDAALNLKNVEPIYGFASGGPLRFKRAVGHRDLFYIDDKDVDLKDVIEASLPKAPLDTAV 120
Query: 409 VAHWLAIEGVQPAIPENAPVEALVAPSDNRKSEQKEDGLPVEIKLPIKHVLSRELQLYFD 588
HWLAIEGVQPAIPENAPVE + APSD +K EQK+D LPV+IKLP+KHVLSRELQLYFD
Sbjct: 121 TCHWLAIEGVQPAIPENAPVEVISAPSDVKKHEQKDDNLPVDIKLPVKHVLSRELQLYFD 180
Query: 589 KITDLTVSRSDSVLFKEALASLATDSGLHPLVPYFTYYISDEVTRSLNNFPLLFALMRVV 768
K+ +LT+S SDSVLFKEAL SLATDSGLHPLVPYFT +I+DEV+R LNNFPLLFALMRVV
Sbjct: 181 KVAELTLSESDSVLFKEALVSLATDSGLHPLVPYFTCFIADEVSRGLNNFPLLFALMRVV 240
Query: 769 RSLLQNPHIHIEPYLHQLMPSVITCLVAKRLGNRFSDNHWELRNFTANLVTSICKRFGHV 948
SLLQNPHI IEPYLHQLMPSV+TCLVAKRLG R +DNHWELR+FTA+LV SICKRFGHV
Sbjct: 241 SSLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGTRLADNHWELRDFTAHLVASICKRFGHV 300
Query: 949 YHNLQPRVTRTLLHAFLDPTKSLTQHYGAIQGLSALGPSVIRXXXXXXXXXXXXXXXXXX 1128
Y NLQ R+T+TLL+AFLDP K+LTQHYGAIQGL ALGP+V+R
Sbjct: 301 YSNLQSRLTKTLLNAFLDPKKALTQHYGAIQGLGALGPNVVRLLLLPNLETYMQLLEPEM 360
Query: 1129 XXXKQKNEMKRHEAWRVYGSLLCASGQCMYDRLKLFPSLLSPPTRTVWRTTQRVATTMPN 1308
KQKNE+KRHEAWRVYG+LL A+GQC+YDRLK+FP+ SPP VW+T +V T+
Sbjct: 361 LLEKQKNELKRHEAWRVYGALLRAAGQCIYDRLKIFPTFPSPPLHAVWKTNSKVLTSSTY 420
Query: 1309 KRKMSQEHLGQQPSLKRVATEGSTGALPATSMQTDMQLAADGFPATXXXXXXXXXXXLRQ 1488
KRK S + L QQP LK+ AT+G G Q A G A+ Q
Sbjct: 421 KRKASPDQLEQQPPLKKAATDGEVGVDLMNFSPVHKQEEA-GTQASSADSIIGTSSSSAQ 479
Query: 1489 VTNDKNSGGSSRREKSEARPPKMSIALAQAWKEDMDAGHLLASLFEFFGESILPFTPAAE 1668
+ N+ G R ++ + + K S AL Q WK+++++G L SLFE FGE IL F A E
Sbjct: 480 MKNETTLDGELRGKRGDTQALKTSAALTQVWKDELNSGRTLVSLFELFGEGILSFIKAPE 539
Query: 1669 LSFFL 1683
+ FL
Sbjct: 540 MYMFL 544
>ref|NP_001043168.1| Os01g0510800 [Oryza sativa Japonica Group]
gi|20804496|dbj|BAB92191.1| putative TAF6 [Oryza sativa
Japonica Group] gi|113532699|dbj|BAF05082.1| Os01g0510800
[Oryza sativa Japonica Group]
gi|215768003|dbj|BAH00232.1| unnamed protein product
[Oryza sativa Japonica Group] gi|222618539|gb|EEE54671.1|
hypothetical protein OsJ_01969 [Oryza sativa Japonica
Group]
Length = 541
Score = 724 bits (1868), Expect = 0.0
Identities = 358/546 (65%), Positives = 433/546 (79%), Gaps = 1/546 (0%)
Frame = +1
Query: 49 MSIVPKETIEVIAQSIGINNLSPDVALALAPDVEYRMREIMQEAIKCMRHSKRTILTADD 228
MSIVPKETIEVI QS+GI NL DV+ ALAPDVEYR+REIMQEAIKCMRH+KRT+LTADD
Sbjct: 1 MSIVPKETIEVIGQSVGIANLPADVSAALAPDVEYRLREIMQEAIKCMRHAKRTVLTADD 60
Query: 229 VDSALNLRNVEPIYGFASGDPLRFKRAVGHKDLFYIDDKDVEFKDVIEAPIPKAPLDTAV 408
VDSAL+LRNVEP+YGFASGDPLRFKRAVGHKDLFYIDD++V+FK++IEAP+PKAPLDTAV
Sbjct: 61 VDSALSLRNVEPVYGFASGDPLRFKRAVGHKDLFYIDDREVDFKEIIEAPLPKAPLDTAV 120
Query: 409 VAHWLAIEGVQPAIPENAPVEALVAPSDNRKSEQ-KEDGLPVEIKLPIKHVLSRELQLYF 585
VAHWLAIEGVQPAIPEN PV+A+VAP++N+++E K+DGLPV+IKLP+KHVLSRELQ+YF
Sbjct: 121 VAHWLAIEGVQPAIPENPPVDAIVAPTENKRTEHGKDDGLPVDIKLPVKHVLSRELQMYF 180
Query: 586 DKITDLTVSRSDSVLFKEALASLATDSGLHPLVPYFTYYISDEVTRSLNNFPLLFALMRV 765
DKI +LT+SRS++ +F+EAL SL+ DSGLHPLVPYF+Y+I+DEVTRSL + P+LFALMRV
Sbjct: 181 DKIAELTMSRSETSVFREALVSLSRDSGLHPLVPYFSYFIADEVTRSLGDLPVLFALMRV 240
Query: 766 VRSLLQNPHIHIEPYLHQLMPSVITCLVAKRLGNRFSDNHWELRNFTANLVTSICKRFGH 945
V+SLL NPHIHIEPYLHQLMPS+ITC+VAKRLG+R SDNHWELR+F+ANLV S+C+RFGH
Sbjct: 241 VQSLLHNPHIHIEPYLHQLMPSIITCMVAKRLGHRLSDNHWELRDFSANLVGSVCRRFGH 300
Query: 946 VYHNLQPRVTRTLLHAFLDPTKSLTQHYGAIQGLSALGPSVIRXXXXXXXXXXXXXXXXX 1125
YHN+Q RVTRTL+ FLDP KSLTQHYGAIQG+SALGPS IR
Sbjct: 301 AYHNIQTRVTRTLVQGFLDPQKSLTQHYGAIQGISALGPSAIRLLLLPNLETYMQLLEPE 360
Query: 1126 XXXXKQKNEMKRHEAWRVYGSLLCASGQCMYDRLKLFPSLLSPPTRTVWRTTQRVATTMP 1305
KQKNEMKR EAWRVYG+LLCA+G+C+YDRLKLFP+LLSP TR + R+ +RV T P
Sbjct: 361 LQLDKQKNEMKRKEAWRVYGALLCAAGKCLYDRLKLFPNLLSPSTRPLLRSNKRVVTNNP 420
Query: 1306 NKRKMSQEHLGQQPSLKRVATEGSTGALPATSMQTDMQLAADGFPATXXXXXXXXXXXLR 1485
NKRK S + QP LK++ T+G+ ++ + M M DGF
Sbjct: 421 NKRKSSTDLSTSQPPLKKMTTDGAMNSMTSAPMPGTM----DGFSTQLPNPSMTQTSSSG 476
Query: 1486 QVTNDKNSGGSSRREKSEARPPKMSIALAQAWKEDMDAGHLLASLFEFFGESILPFTPAA 1665
Q+ + + G RR++ ++S L AWKED +AGHLL+SL+E FGE+I F
Sbjct: 477 QLV-ESTASGVIRRDQGSNHTQRVSTVLRLAWKEDQNAGHLLSSLYEVFGEAIFSFVQPP 535
Query: 1666 ELSFFL 1683
E+SFFL
Sbjct: 536 EISFFL 541