BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003410
         (1566 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containi...   711   0.0  
emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]   709   0.0  
ref|XP_002523825.1| pentatricopeptide repeat-containing protein,...   699   0.0  
ref|XP_003603831.1| Pentatricopeptide repeat-containing protein ...   684   0.0  
ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containi...   679   0.0  

>ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
            mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  711 bits (1835), Expect = 0.0
 Identities = 348/481 (72%), Positives = 394/481 (81%)
 Frame = +2

Query: 122  EDENDTNNTKLSPTETLLAEKFHTLIKDHHRXXXXXXXXXXXXXXXXXITTLSLDFSKTT 301
            E  N   N  LS  ETL+ EKFH+LIK H R                 I +LS DFS+ +
Sbjct: 43   ESGNSAVNIVLSSEETLVVEKFHSLIKSHQRKNTNPDPISPNPHYT--IASLSFDFSQIS 100

Query: 302  TINSITPQIVKHVIEKCGSIRHGIPFIQALSFFNWVTNQTQFHHCPQPYNEMIDLAGKVR 481
            + +S++  IV+ VIEKCG +RHGIPF Q L+FFNW TN  +F H P+PY EMIDLAGKVR
Sbjct: 101  SADSVSSAIVRRVIEKCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVR 160

Query: 482  HFDIAWYFIDLMKTRNVQIPVETFSILVRRYVRAGLVAEGVHAFNRMEDYGCKPDKIAFS 661
             FD+AW  IDLMKTRNV+IPVETF+ILVRRYV+AGL AE VHAFNRMEDYGCKPDKIAFS
Sbjct: 161  QFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFS 220

Query: 662  IVISILCKKRRAEEAQSFFDGLKDKFEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVG 841
            +VIS L KKRRA EAQSFFD LKD+FEPDV++YTSLV+GWCRAGNI +AERVF EMK  G
Sbjct: 221  VVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAG 280

Query: 842  IQPNVYTYSIVIDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVL 1021
            IQPNVYTYSIVIDALCR GQI+RAHDVF+EMIDVGC PN+ITFNNLMRVHVKAGRTEKVL
Sbjct: 281  IQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVL 340

Query: 1022 QVYNQMKRLDCPADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCI 1201
            QVYNQMKRL CP D ITYNFLIESHCRDDNLEEA K+LN  VKKGC+ NAS+FNPIF CI
Sbjct: 341  QVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCI 399

Query: 1202 MKLKDVNAAHRMYTKMKEMNCTPNTVTYNVLMKMFAEFKSADMVFKLKQEMDENEVEPNV 1381
             KL DVN+AHRM+ KMK++ C PNTVTYN+LM+MFA+ KS DMV KL++EMDENE+EPN 
Sbjct: 400  SKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNA 459

Query: 1382 NTYRVLISLFCRIGHWVRAHKFFIEMLEEKCLRPTLPMYESVLLHLRKAKQIEKHEELVE 1561
            NTYRVLIS FC IGHW  A+ FF EM+EEKCLRP+LP+YE VL  LRKA Q++KHEELVE
Sbjct: 460  NTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVE 519

Query: 1562 K 1564
            K
Sbjct: 520  K 520


>emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  709 bits (1831), Expect = 0.0
 Identities = 354/525 (67%), Positives = 406/525 (77%), Gaps = 8/525 (1%)
 Frame = +2

Query: 14   STMAFLTSKLRLRF--------TSHTXXXXXXXXXXXXXXXXXXEDENDTNNTKLSPTET 169
            ++MA + SK+RL          + H+                  E  N   N  LS  ET
Sbjct: 1031 ASMALVKSKVRLSLLRYSLSPVSQHSFRLYSSSSEASEEEDEVKESGNSAVNIVLSSEET 1090

Query: 170  LLAEKFHTLIKDHHRXXXXXXXXXXXXXXXXXITTLSLDFSKTTTINSITPQIVKHVIEK 349
            L+ EKFH+LIK H R                 I +LS DFS+ ++ +S++  IV+ VIEK
Sbjct: 1091 LVVEKFHSLIKSHQRKNTNPDPISPNPHYT--IASLSFDFSQISSADSVSSAIVRRVIEK 1148

Query: 350  CGSIRHGIPFIQALSFFNWVTNQTQFHHCPQPYNEMIDLAGKVRHFDIAWYFIDLMKTRN 529
            CG +RHGIPF Q L+FFNW TN  +F H P+PY EMIDLAGKVR FD+AW  IDLMKTRN
Sbjct: 1149 CGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRN 1208

Query: 530  VQIPVETFSILVRRYVRAGLVAEGVHAFNRMEDYGCKPDKIAFSIVISILCKKRRAEEAQ 709
            V+IPVETF+ILVRRYV+AGL AE VHAFNRMEDYGCKPDKIAFS+VIS L KKRRA EAQ
Sbjct: 1209 VEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQ 1268

Query: 710  SFFDGLKDKFEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVGIQPNVYTYSIVIDALC 889
            SFFD LKD+FEPDV++YTSLV+GWCRAGNI +AERVF EMK  GI PNVYTYSIVIDALC
Sbjct: 1269 SFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALC 1328

Query: 890  RCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLDCPADTI 1069
            R GQI+RAHDVF+EMIDVGC PN+ITFNNLMRVHVKAGRTEKVLQVYNQMKRL CP D I
Sbjct: 1329 RSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAI 1388

Query: 1070 TYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVNAAHRMYTKM 1249
            TYNFLIESHCRDDNLEEA K+LN  VKKGC+ NAS+FNPIF CI KL DVN+AHRM+ KM
Sbjct: 1389 TYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKM 1447

Query: 1250 KEMNCTPNTVTYNVLMKMFAEFKSADMVFKLKQEMDENEVEPNVNTYRVLISLFCRIGHW 1429
            K++ C PNTVTYN+LM+MFA+ KS DMV KL++EMDENE+EPN NTYRVLIS FC IGHW
Sbjct: 1448 KDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHW 1507

Query: 1430 VRAHKFFIEMLEEKCLRPTLPMYESVLLHLRKAKQIEKHEELVEK 1564
              A+ FF EM+EEKCLRP+LP+YE VL  LRKA Q++KHEELVEK
Sbjct: 1508 NNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEK 1552


>ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223536913|gb|EEF38551.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 528

 Score =  699 bits (1803), Expect = 0.0
 Identities = 338/477 (70%), Positives = 390/477 (81%)
 Frame = +2

Query: 128  ENDTNNTKLSPTETLLAEKFHTLIKDHHRXXXXXXXXXXXXXXXXXITTLSLDFSKTTTI 307
            E D  N  LS  ET LA KFH+LIKDHHR                   +LSLDFS  +T 
Sbjct: 46   EEDYINPSLSFEETTLANKFHSLIKDHHRRNPNFSLPNTPSH------SLSLDFSHFST- 98

Query: 308  NSITPQIVKHVIEKCGSIRHGIPFIQALSFFNWVTNQTQFHHCPQPYNEMIDLAGKVRHF 487
            + ++P +V HVIEKC ++RHGIPF QALSFFNW T++  F H P+PYNEMIDLAGKVR+F
Sbjct: 99   SPVSPSLVSHVIEKCAAVRHGIPFFQALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNF 158

Query: 488  DIAWYFIDLMKTRNVQIPVETFSILVRRYVRAGLVAEGVHAFNRMEDYGCKPDKIAFSIV 667
            D+ W  IDLMK RNV+I +ETFSIL+RRYVRAGL +E VHAFNRMEDY CKPDKIAFSI+
Sbjct: 159  DLGWQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSIL 218

Query: 668  ISILCKKRRAEEAQSFFDGLKDKFEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVGIQ 847
            ISILC+KRRA EAQSFFD LKDKFEPDVI+YT+LV GWCRAGNI +AERVF EMK  G  
Sbjct: 219  ISILCRKRRATEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCM 278

Query: 848  PNVYTYSIVIDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVLQV 1027
            PNVYTY+IVIDALCRCGQI+RAHDVFAEM+DVGC PNSITFNNL+RVHVKAGRTEKVLQV
Sbjct: 279  PNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQV 338

Query: 1028 YNQMKRLDCPADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMK 1207
            YNQMKR+ CP DT+TYNFLIESHC+D NL+EA KVLN MVKKGCS NASTFN +F  I K
Sbjct: 339  YNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAK 398

Query: 1208 LKDVNAAHRMYTKMKEMNCTPNTVTYNVLMKMFAEFKSADMVFKLKQEMDENEVEPNVNT 1387
            L+DVN AHR+Y KMKE+ C  NTVTYN+LM+MF + KS DMV KLK+EMDE++VEPNVNT
Sbjct: 399  LRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNT 458

Query: 1388 YRVLISLFCRIGHWVRAHKFFIEMLEEKCLRPTLPMYESVLLHLRKAKQIEKHEELV 1558
            Y VLI+++C +GHW  A+KFF EM+EEKCL+P+LP+YE VL  LRKA Q++KHEELV
Sbjct: 459  YCVLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELV 515


>ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355492879|gb|AES74082.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  684 bits (1766), Expect = 0.0
 Identities = 328/484 (67%), Positives = 390/484 (80%), Gaps = 4/484 (0%)
 Frame = +2

Query: 125  DENDTN----NTKLSPTETLLAEKFHTLIKDHHRXXXXXXXXXXXXXXXXXITTLSLDFS 292
            D ND N    NT LSP +T + +KFHT+IKDH+R                 I  LS++FS
Sbjct: 37   DTNDNNTTPQNTNLSPEDTHIVDKFHTIIKDHYRKNPNPNAVSPSLNLS--IPDLSIEFS 94

Query: 293  KTTTINSITPQIVKHVIEKCGSIRHGIPFIQALSFFNWVTNQTQFHHCPQPYNEMIDLAG 472
            K +T+ S++P I +  IEKC  +RHGIPF+Q+L+FFNW T    F   P+PYNEMIDLAG
Sbjct: 95   KISTVYSVSPSITRRAIEKCSGVRHGIPFLQSLAFFNWATTLEGFPSSPEPYNEMIDLAG 154

Query: 473  KVRHFDIAWYFIDLMKTRNVQIPVETFSILVRRYVRAGLVAEGVHAFNRMEDYGCKPDKI 652
            K+RHFD+AW+ IDLMK+R V+I V TFS+LVRRYVRAGL AE VHAFNRMEDYGCKPDK+
Sbjct: 155  KLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKV 214

Query: 653  AFSIVISILCKKRRAEEAQSFFDGLKDKFEPDVIIYTSLVNGWCRAGNIDQAERVFREMK 832
            +FSIVIS LCKKRRA EA+ FFD LK KFEPDVI+YTSLV+GWCRAG+I +AE VF +MK
Sbjct: 215  SFSIVISSLCKKRRASEAELFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMK 274

Query: 833  EVGIQPNVYTYSIVIDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTE 1012
            E G++PNVYTYSIVID+LCRCGQI+RAHDVF+EMID GC PN++TFN+LMRVHVKAGRTE
Sbjct: 275  EAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTE 334

Query: 1013 KVLQVYNQMKRLDCPADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIF 1192
            KVLQVYNQMKRL C ADTI+YNFLIESHC+D+NL+EA KVL+ MVKKG + NASTFN IF
Sbjct: 335  KVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIF 394

Query: 1193 RCIMKLKDVNAAHRMYTKMKEMNCTPNTVTYNVLMKMFAEFKSADMVFKLKQEMDENEVE 1372
             CI +L DVN AHRMY KMKE+ C PNT+TYN+LM+MFA+ KS DMV KLK+EMDE+EVE
Sbjct: 395  GCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVE 454

Query: 1373 PNVNTYRVLISLFCRIGHWVRAHKFFIEMLEEKCLRPTLPMYESVLLHLRKAKQIEKHEE 1552
            PNVNTYR+LI +FC  GHW  A+    EM+EEKCL+P L +YE+VL  LR A Q++KHEE
Sbjct: 455  PNVNTYRILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEE 514

Query: 1553 LVEK 1564
            LVEK
Sbjct: 515  LVEK 518


>ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
            mitochondrial-like [Glycine max]
          Length = 564

 Score =  679 bits (1753), Expect = 0.0
 Identities = 323/474 (68%), Positives = 384/474 (81%)
 Frame = +2

Query: 143  NTKLSPTETLLAEKFHTLIKDHHRXXXXXXXXXXXXXXXXXITTLSLDFSKTTTINSITP 322
            N  LSP ET LA+KFH  IK+HHR                 I  LSL FS  +  + I+P
Sbjct: 80   NPNLSPEETTLADKFHAAIKEHHRRNPTPNPNAPPPTPNLTIPDLSLAFSAISAAHPISP 139

Query: 323  QIVKHVIEKCGSIRHGIPFIQALSFFNWVTNQTQFHHCPQPYNEMIDLAGKVRHFDIAWY 502
             +   VIEKCG +RHGIPF+Q+L+FFNW ++   F   P+PYNEM+DLAGK+R FD+AW+
Sbjct: 140  SVAHRVIEKCGGVRHGIPFLQSLAFFNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLAWH 199

Query: 503  FIDLMKTRNVQIPVETFSILVRRYVRAGLVAEGVHAFNRMEDYGCKPDKIAFSIVISILC 682
             IDLMK+R V+I V TFS LVRRYVRAGL AE VHAFNRMEDYGC PD +AFSIVIS LC
Sbjct: 200  VIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLC 259

Query: 683  KKRRAEEAQSFFDGLKDKFEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVGIQPNVYT 862
            KKRRA EAQSFFD LK +FEPDV++YTSLV+GWCRAG+I +AE VF +MK  GI+PNVYT
Sbjct: 260  KKRRANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYT 319

Query: 863  YSIVIDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVLQVYNQMK 1042
            YSIVID+LCRCGQI+RAHDVF+EMID GC PN++TFN+LMRVHVKAGRTEKVL+VYNQMK
Sbjct: 320  YSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMK 379

Query: 1043 RLDCPADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVN 1222
            RL CPADTI+YNF+IESHCRD+NLEEA K+LN MVKKG + NASTFN IF CI KL DVN
Sbjct: 380  RLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVN 439

Query: 1223 AAHRMYTKMKEMNCTPNTVTYNVLMKMFAEFKSADMVFKLKQEMDENEVEPNVNTYRVLI 1402
             AHRMY +MKE+NC PNT+TYN+LM+MFAE +S DMV K+K+EMDE++VEPNVNTYR+LI
Sbjct: 440  GAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVNTYRILI 499

Query: 1403 SLFCRIGHWVRAHKFFIEMLEEKCLRPTLPMYESVLLHLRKAKQIEKHEELVEK 1564
            S+FC + HW  A+K  +EM+EEKCLRP L +YE+VL  LRKA Q++KHEELV+K
Sbjct: 500  SMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAGQLKKHEELVDK 553