BLASTX nr result
ID: Coptis24_contig00003388
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00003388
(1429 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI24961.3| unnamed protein product [Vitis vinifera] 330 7e-88
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-... 330 7e-88
ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD,... 296 7e-78
ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD,... 282 2e-73
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165... 280 7e-73
>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 330 bits (845), Expect = 7e-88
Identities = 173/295 (58%), Positives = 223/295 (75%), Gaps = 2/295 (0%)
Frame = -2
Query: 945 SRSARLTPNEEAEFTLHLKEGARLDAAKTRARETSQCAFTSSQWDASTGMKRRKLEMIMC 766
+RSA LTP EEAEF L LKE A L+AA+ R ET + TS+QW + G+KR L+ ++C
Sbjct: 18 ARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLC 77
Query: 765 KAXXXXXXXXXXXXRFVVSIANGYQGKGLSLEDLIQEGSIGLLRGAKKFEPNKGFKLSTY 586
R VVSIA YQGKGLSL+DLIQEGSIGLLRGA++F+P++G+KLSTY
Sbjct: 78 NGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 137
Query: 585 AYWWIKQAIIRAIANKSRIIRLSGSMCEMVPKIVEANKELTRRLGRNPTNDEIADSIGIK 406
YWWI+QAI+RAIANKSRIIRL GS+CEMV KI EA L+RRL R PT DEIA+ I +
Sbjct: 138 VYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVN 197
Query: 405 VSSITLLQKRNRPPISLDQ--TLRECMTMQGIIPGPEELRPENMLKKKVIKKEVDRVLMT 232
VS++ L+ +R+R PIS+DQ T + CMT+Q IIPGP+E P+ M+K++++K+EV+R L T
Sbjct: 198 VSTVRLVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNT 257
Query: 231 LDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIHGISLAKLRRTNNID 67
L REA I+RLYFG+NGET S EEIG ++ LSRERVRQI+ I+L+KLR+T+ +D
Sbjct: 258 LCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVD 312
>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 330 bits (845), Expect = 7e-88
Identities = 173/295 (58%), Positives = 223/295 (75%), Gaps = 2/295 (0%)
Frame = -2
Query: 945 SRSARLTPNEEAEFTLHLKEGARLDAAKTRARETSQCAFTSSQWDASTGMKRRKLEMIMC 766
+RSA LTP EEAEF L LKE A L+AA+ R ET + TS+QW + G+KR L+ ++C
Sbjct: 125 ARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLC 184
Query: 765 KAXXXXXXXXXXXXRFVVSIANGYQGKGLSLEDLIQEGSIGLLRGAKKFEPNKGFKLSTY 586
R VVSIA YQGKGLSL+DLIQEGSIGLLRGA++F+P++G+KLSTY
Sbjct: 185 NGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 244
Query: 585 AYWWIKQAIIRAIANKSRIIRLSGSMCEMVPKIVEANKELTRRLGRNPTNDEIADSIGIK 406
YWWI+QAI+RAIANKSRIIRL GS+CEMV KI EA L+RRL R PT DEIA+ I +
Sbjct: 245 VYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVN 304
Query: 405 VSSITLLQKRNRPPISLDQ--TLRECMTMQGIIPGPEELRPENMLKKKVIKKEVDRVLMT 232
VS++ L+ +R+R PIS+DQ T + CMT+Q IIPGP+E P+ M+K++++K+EV+R L T
Sbjct: 305 VSTVRLVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNT 364
Query: 231 LDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIHGISLAKLRRTNNID 67
L REA I+RLYFG+NGET S EEIG ++ LSRERVRQI+ I+L+KLR+T+ +D
Sbjct: 365 LCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVD 419
>ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cucumis sativus]
Length = 436
Score = 296 bits (759), Expect = 7e-78
Identities = 179/436 (41%), Positives = 257/436 (58%), Gaps = 5/436 (1%)
Frame = -2
Query: 1359 STMTNLCAPTNNSPTLPSVHIYSVPKMLSIRTLQPVLPSSSSGAHKFGLSLVSEDSLTIV 1180
+T ++LC+ SPTLPS+ + S+P + + QP P K G +++S D+LT+
Sbjct: 2 ATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFST-KLGPNIISNDTLTLP 60
Query: 1179 XXXXXXXXXXXXXXXXXAMILHCEENKFECENDEIME-SCDMRRVSAGT--WXXXXXXXX 1009
+ + +N E ME SC V GT W
Sbjct: 61 PPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC----VGDGTVAWKKKRRKRR 116
Query: 1008 XKFPCNELNSVGKILKFPLRKSRSARLTPNEEAEFTLHLKEGARLDAAKTRARETSQCAF 829
+ + + PLR L+P EEAE L LKE L+ KTR ET +
Sbjct: 117 KEVGVKAEENWIALSSGPLRPGY---LSPKEEAELCLCLKEAVLLENVKTRIMETQEHEP 173
Query: 828 TSSQWDASTGMKRRKLEMIMCKAXXXXXXXXXXXXRFVVSIANGYQGKGLSLEDLIQEGS 649
T+ Q + G K ++ I+C+A + V+SIA YQGKGLSL+DL QEG+
Sbjct: 174 TNKQLAIAMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGN 233
Query: 648 IGLLRGAKKFEPNKGFKLSTYAYWWIKQAIIRAIANKSRIIRLSGSMCEMVPKIVEANKE 469
IGLL+GA++FEPN+G KLSTYAYWWI+QAIIRA+ KSR++RL G M +MV +I E N
Sbjct: 234 IGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNH 293
Query: 468 LTRRLGRNPTNDEIADSIGIKVSSITLLQKRNRPPISLDQTL--RECMTMQGIIPGPEEL 295
L +L R PTN E+A+S+ + +S+I L+ +R++ PIS++Q + R C+T+Q I+PGP+ L
Sbjct: 294 LGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNL 353
Query: 294 RPENMLKKKVIKKEVDRVLMTLDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQ 115
PENM+ +K++K+E+ R+L TL REA I+ LYFGLNGE +S EEIG LNLSRE +RQ
Sbjct: 354 TPENMVMRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQ 413
Query: 114 IHGISLAKLRRTNNID 67
+ +L+KL++T+ +D
Sbjct: 414 TNIATLSKLKKTDVLD 429
>ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cucumis sativus]
Length = 341
Score = 282 bits (721), Expect = 2e-73
Identities = 147/294 (50%), Positives = 205/294 (69%), Gaps = 2/294 (0%)
Frame = -2
Query: 942 RSARLTPNEEAEFTLHLKEGARLDAAKTRARETSQCAFTSSQWDASTGMKRRKLEMIMCK 763
R L+P EEAE L LKE L+ KTR ET + T+ Q + G K ++ I+C+
Sbjct: 41 RPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRILCR 100
Query: 762 AXXXXXXXXXXXXRFVVSIANGYQGKGLSLEDLIQEGSIGLLRGAKKFEPNKGFKLSTYA 583
A + V+SIA YQGKGLSL+DL QEG+IGLL+GA++FEPN+G KLSTYA
Sbjct: 101 ARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYA 160
Query: 582 YWWIKQAIIRAIANKSRIIRLSGSMCEMVPKIVEANKELTRRLGRNPTNDEIADSIGIKV 403
YWWI+QAIIRA+ KSR++RL G M +MV +I E N L +L R PTN E+A+S+ + +
Sbjct: 161 YWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHL 220
Query: 402 SSITLLQKRNRPPISLDQTL--RECMTMQGIIPGPEELRPENMLKKKVIKKEVDRVLMTL 229
S+I L+ +R++ PIS++Q + R C+T+Q I+PGP+ L PENM+ +K++K+E+ R+L TL
Sbjct: 221 STIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTL 280
Query: 228 DSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIHGISLAKLRRTNNID 67
REA I+ LYFGLNGE +S EEIG LNLSRE +RQ + +L+KL++T+ +D
Sbjct: 281 SKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLD 334
>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
polymerase sigma factor sigD, chloroplastic; Short=Sigma
factor D; Short=Sigma-D; AltName: Full=RNA polymerase
sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
gi|9758039|dbj|BAB08700.1| sigma-like factor
[Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
factor 4 [Arabidopsis thaliana]
Length = 419
Score = 280 bits (716), Expect = 7e-73
Identities = 146/297 (49%), Positives = 208/297 (70%), Gaps = 2/297 (0%)
Frame = -2
Query: 945 SRSARLTPNEEAEFTLHLKEGARLDAAKTRARETSQCAFTSSQWDASTGMKRRKLEMIMC 766
SRS L+ EE + L+LKEGA+L+ T E + + + G K+R I+C
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEENEMVSVLLA---SGRGKKKRSANEILC 174
Query: 765 KAXXXXXXXXXXXXRFVVSIANGYQGKGLSLEDLIQEGSIGLLRGAKKFEPNKGFKLSTY 586
+ R VVSIA GYQGKGL+L+DLIQEGSIGLLRGA++F+P++G+KLSTY
Sbjct: 175 RRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 234
Query: 585 AYWWIKQAIIRAIANKSRIIRLSGSMCEMVPKIVEANKELTRRLGRNPTNDEIADSIGIK 406
YWWIKQAI+RAIA+KSR+++L GSM E+ K+ EA+ LTR+L R P+ +EIA+ + +
Sbjct: 235 VYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLN 294
Query: 405 VSSITLLQKRNRPPISLDQTLRE--CMTMQGIIPGPEELRPENMLKKKVIKKEVDRVLMT 232
VS++ L +R+R P+SLD+ + MT+Q I+ GP+E RPE M+K++ +K E++++L +
Sbjct: 295 VSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGS 354
Query: 231 LDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIHGISLAKLRRTNNIDSI 61
L +RE+ ++ LYFGLNGET S EEIG L LSRERVRQI+GI+L KLR +N++ +
Sbjct: 355 LTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDL 411