BLASTX nr result

ID: Coptis24_contig00003369 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003369
         (560 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002318944.1| predicted protein [Populus trichocarpa] gi|1...   135   3e-30
ref|XP_002281765.1| PREDICTED: uncharacterized protein LOC100257...   134   1e-29
emb|CAN64719.1| hypothetical protein VITISV_026720 [Vitis vinifera]   133   2e-29
ref|XP_002330030.1| predicted protein [Populus trichocarpa] gi|2...   131   8e-29
ref|NP_001236106.1| uncharacterized protein LOC100306511 [Glycin...   130   1e-28

>ref|XP_002318944.1| predicted protein [Populus trichocarpa] gi|118483456|gb|ABK93627.1|
           unknown [Populus trichocarpa]
           gi|222857320|gb|EEE94867.1| predicted protein [Populus
           trichocarpa]
          Length = 117

 Score =  135 bits (341), Expect = 3e-30
 Identities = 69/115 (60%), Positives = 79/115 (68%), Gaps = 5/115 (4%)
 Frame = -2

Query: 550 MAMAWNQILSN-----QTTKQHPFIFLGLSRFFSKTTSQYVEKVGIPEFLNGVGKGAETH 386
           MAMAW QI++N         Q      G SRFFSK++S+Y+ KVGIPEFLNG+GKG E H
Sbjct: 1   MAMAWRQIITNTKRAVSIPTQQAISTPGFSRFFSKSSSRYIVKVGIPEFLNGIGKGVEAH 60

Query: 385 VVKLETEIGDFNXXXXXXXXXXXXLGIPCKHRKLILKYTHKYRLGLWRPRAESVK 221
           V KLE+EIGDF+            LGIPC+ RKLILKY HKYRLGLWRPRAE VK
Sbjct: 61  VAKLESEIGDFHKLLVTRTLKLKKLGIPCQQRKLILKYAHKYRLGLWRPRAEPVK 115


>ref|XP_002281765.1| PREDICTED: uncharacterized protein LOC100257949 [Vitis vinifera]
          Length = 108

 Score =  134 bits (336), Expect = 1e-29
 Identities = 69/108 (63%), Positives = 77/108 (71%)
 Frame = -2

Query: 544 MAWNQILSNQTTKQHPFIFLGLSRFFSKTTSQYVEKVGIPEFLNGVGKGAETHVVKLETE 365
           MAW QI+SN+          GL RFFSK+T  Y+ KVGIPEFLNG+GKG ETHV KLETE
Sbjct: 1   MAWRQIISNRMGVSWQ---AGLPRFFSKSTP-YIVKVGIPEFLNGIGKGVETHVAKLETE 56

Query: 364 IGDFNXXXXXXXXXXXXLGIPCKHRKLILKYTHKYRLGLWRPRAESVK 221
           IGDF             LGIPCKHRKLIL++THKYRLGLWRPRAE +K
Sbjct: 57  IGDFQKLLVTRTLRLKKLGIPCKHRKLILRHTHKYRLGLWRPRAEPIK 104


>emb|CAN64719.1| hypothetical protein VITISV_026720 [Vitis vinifera]
          Length = 108

 Score =  133 bits (335), Expect = 2e-29
 Identities = 69/108 (63%), Positives = 77/108 (71%)
 Frame = -2

Query: 544 MAWNQILSNQTTKQHPFIFLGLSRFFSKTTSQYVEKVGIPEFLNGVGKGAETHVVKLETE 365
           MAW QI+SN+          GL RFFSK+T  Y+ KVGIPEFLNG+GKG ETHV KLETE
Sbjct: 1   MAWRQIISNRMGISWQ---AGLPRFFSKSTP-YIVKVGIPEFLNGIGKGVETHVAKLETE 56

Query: 364 IGDFNXXXXXXXXXXXXLGIPCKHRKLILKYTHKYRLGLWRPRAESVK 221
           IGDF             LGIPCKHRKLIL++THKYRLGLWRPRAE +K
Sbjct: 57  IGDFQKLLVTRTLRLKKLGIPCKHRKLILRHTHKYRLGLWRPRAEPIK 104


>ref|XP_002330030.1| predicted protein [Populus trichocarpa] gi|222871455|gb|EEF08586.1|
           predicted protein [Populus trichocarpa]
          Length = 117

 Score =  131 bits (329), Expect = 8e-29
 Identities = 67/115 (58%), Positives = 78/115 (67%), Gaps = 5/115 (4%)
 Frame = -2

Query: 550 MAMAWNQILSN-----QTTKQHPFIFLGLSRFFSKTTSQYVEKVGIPEFLNGVGKGAETH 386
           MAMAW QI +N         +      GLSRFFSK++S Y+ KVGIPEFLNG+GKG E H
Sbjct: 1   MAMAWRQIFTNTKRAFSIPPERAVSTPGLSRFFSKSSSPYLVKVGIPEFLNGIGKGVEAH 60

Query: 385 VVKLETEIGDFNXXXXXXXXXXXXLGIPCKHRKLILKYTHKYRLGLWRPRAESVK 221
           V KLE+EIGDF+            LGIPC+ RKLILKY HKYR+GLWRPRA+ VK
Sbjct: 61  VTKLESEIGDFHKLLVTRTLKLKKLGIPCQQRKLILKYAHKYRVGLWRPRAQPVK 115


>ref|NP_001236106.1| uncharacterized protein LOC100306511 [Glycine max]
           gi|255628743|gb|ACU14716.1| unknown [Glycine max]
          Length = 110

 Score =  130 bits (327), Expect = 1e-28
 Identities = 69/108 (63%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
 Frame = -2

Query: 544 MAWNQILSNQTTKQHPFIF-LGLSRFFSKTTSQYVEKVGIPEFLNGVGKGAETHVVKLET 368
           MAW Q+    T      I  L LSRFFSK++S YV KVGIPEFLNG+GKG E+HV KLE+
Sbjct: 1   MAWLQLQRIVTKGGANLISPLPLSRFFSKSSSPYVVKVGIPEFLNGIGKGVESHVPKLES 60

Query: 367 EIGDFNXXXXXXXXXXXXLGIPCKHRKLILKYTHKYRLGLWRPRAESV 224
           EIGDF             LGIPCKHRKLILKYTHKYRLGLWRPR ES+
Sbjct: 61  EIGDFQKLLLTRTLKLKKLGIPCKHRKLILKYTHKYRLGLWRPRVESI 108


Top