BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003364
         (1447 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269291.1| PREDICTED: F-box protein FBW2 isoform 1 [Vit...   379   e-102
ref|XP_002301066.1| predicted protein [Populus trichocarpa] gi|2...   377   e-102
ref|XP_002454240.1| hypothetical protein SORBIDRAFT_04g027350 [S...   356   7e-96
ref|XP_002513950.1| ubiquitin-protein ligase, putative [Ricinus ...   348   2e-93
ref|XP_003522785.1| PREDICTED: F-box protein FBW2-like isoform 1...   344   4e-92

>ref|XP_002269291.1| PREDICTED: F-box protein FBW2 isoform 1 [Vitis vinifera]
            gi|359496684|ref|XP_003635300.1| PREDICTED: F-box protein
            FBW2 isoform 2 [Vitis vinifera]
            gi|296085646|emb|CBI29445.3| unnamed protein product
            [Vitis vinifera]
          Length = 317

 Score =  379 bits (973), Expect = e-102
 Identities = 194/325 (59%), Positives = 235/325 (72%), Gaps = 1/325 (0%)
 Frame = -2

Query: 1224 MEGGGELRRWDELIPDALALIFKNLNLQQILTVIPRVCKSWGKVVAGPYCWQEIDIEEWS 1045
            ME G E R WDELIPDAL LIF NL+LQ+ILTVIPRVCKSW K V GPYCWQEIDI EWS
Sbjct: 1    MEEGCEFRSWDELIPDALGLIFSNLSLQEILTVIPRVCKSWRKTVMGPYCWQEIDIVEWS 60

Query: 1044 LNVEPDQLDRMIRMLITQSGGCFRKLCASGIPNNGQLISFVADHARSLHTLKLPRSDISN 865
                P+ LDRM+ ML+T+S G  RKLC SG+P +    SFVADHA+SL TL+LPRS+IS+
Sbjct: 61   QRSSPENLDRMLEMLMTRSAGSHRKLCVSGLPTDASF-SFVADHAKSLQTLRLPRSEISD 119

Query: 864  SMVESIVKKLSNISFLDVSYCHYIGAPALEAIGNHCKSLAVLQRVMHPLTVEQMVCQDEE 685
             +VE +  KLS I+FLDVSYC  +GAPALEAIG HCK L  L+R+MHPL +   + QD+E
Sbjct: 120  PIVEEVAWKLSTITFLDVSYCRKMGAPALEAIGKHCKFLTGLRRIMHPLEIIDKLTQDDE 179

Query: 684  AHAIATTMPKLKHLELAYALVSTDAVREILFKCRQLEYLDLRGCWDVKLDEEFLKEKFSG 505
            A AIA TMPKLKHLE+AY LVST+ V +IL  C +LE LD+RGCW+VKLDE+ +K KFSG
Sbjct: 180  ALAIAATMPKLKHLEIAYLLVSTEPVLKILASCCELELLDVRGCWNVKLDEKLIK-KFSG 238

Query: 504  VKVLGPHVEDSYERNIWEDCSDFSDSSSYLAWEFMAGQVGXXXXXXXXXXXXXXEMWDDE 325
            +KV+GP V D YE N W+DCS +S SS YLAW+F+AG++                 W+DE
Sbjct: 239  LKVVGPLVIDCYEGNGWDDCSAYSGSSGYLAWDFVAGEM-------DYYDDELYAAWEDE 291

Query: 324  QRXXXXXLRFYEGFNGP-IGYAWPQ 253
                   LRFY+GF+    G+ WPQ
Sbjct: 292  S-MDDLELRFYDGFDADNAGFDWPQ 315


>ref|XP_002301066.1| predicted protein [Populus trichocarpa] gi|222842792|gb|EEE80339.1|
            predicted protein [Populus trichocarpa]
          Length = 321

 Score =  377 bits (969), Expect = e-102
 Identities = 194/325 (59%), Positives = 234/325 (72%), Gaps = 2/325 (0%)
 Frame = -2

Query: 1224 MEGGGELRRWDELIPDALALIFKNLNLQQILTVIPRVCKSWGKVVAGPYCWQEIDIEEWS 1045
            ME G E RRWDELIPDAL LIF+NL+LQ+ILT++PRVCKSW + V+GPYCWQEI+IEEWS
Sbjct: 1    MEEGDEYRRWDELIPDALGLIFRNLSLQEILTMVPRVCKSWSRAVSGPYCWQEINIEEWS 60

Query: 1044 LNVEPDQLDRMIRMLITQSGGCFRKLCASGIPNNGQLISFVADHARSLHTLKLPRSDISN 865
                PD LDRM++MLIT+S G  RKLC SG+ N+    SF+ADHA SL TL++PRSDI +
Sbjct: 61   TRCHPDHLDRMLQMLITRSCGSLRKLCVSGLHNDTNF-SFLADHAGSLQTLRIPRSDIGD 119

Query: 864  SMVESIVKKLSNISFLDVSYCHYIGAPALEAIGNHCKSLAVLQRVMHPLTVEQMVCQDEE 685
            S+VE I  +LS ++FLDVSYC+ I   ALEAIG HCK L  L R MHPL  E +  QD+E
Sbjct: 120  SIVEQIAGRLSTVTFLDVSYCNKISGRALEAIGKHCKLLVGLCRNMHPLDTEGLEAQDDE 179

Query: 684  AHAIATTMPKLKHLELAYALVSTDAVREILFKCRQLEYLDLRGCWDVKLDEEFLKEKFSG 505
            A+AIATTMPKLK LE+AY LVST+++ +IL  C  LE++DLRGCW+V LD +F KEKF  
Sbjct: 180  AYAIATTMPKLKRLEMAYHLVSTESLLQILSSCTNLEFMDLRGCWNVNLDNKFFKEKFQK 239

Query: 504  VKVLGPHV-EDSYERNIW-EDCSDFSDSSSYLAWEFMAGQVGXXXXXXXXXXXXXXEMWD 331
            + VLGP V ED YE N W EDCS++SD S YLAW F+AG  G              EMWD
Sbjct: 240  LTVLGPLVMEDYYEANDWEEDCSEYSDDSDYLAWGFLAGDGG-----DYDDDESYDEMWD 294

Query: 330  DEQRXXXXXLRFYEGFNGPIGYAWP 256
            DE R     LRFYEG +  + Y WP
Sbjct: 295  DEGRLEELELRFYEGADAGL-YGWP 318


>ref|XP_002454240.1| hypothetical protein SORBIDRAFT_04g027350 [Sorghum bicolor]
            gi|241934071|gb|EES07216.1| hypothetical protein
            SORBIDRAFT_04g027350 [Sorghum bicolor]
          Length = 365

 Score =  356 bits (914), Expect = 7e-96
 Identities = 176/325 (54%), Positives = 233/325 (71%), Gaps = 3/325 (0%)
 Frame = -2

Query: 1221 EGGGELRRWDELIPDALALIFKNLNLQQILTVIPRVCKSWGKVVAGPYCWQEIDIEEWSL 1042
            E G E R W+EL+PDAL LIF+NL LQ++LTV+PRVCKSWG+VVAGPYCWQEIDIEEWS 
Sbjct: 48   EDGKEYRCWEELLPDALGLIFRNLPLQEMLTVVPRVCKSWGRVVAGPYCWQEIDIEEWSQ 107

Query: 1041 NV-EPDQLDRMIRMLITQSGGCFRKLCASGIPNNGQLISFVADHARSLHTLKLPRSDISN 865
               +PDQ+ RM+ +LI +SGG  R++  SG+P +  L SF+ D+AR+L TL++PRS+IS+
Sbjct: 108  QQSKPDQIGRMVELLIGRSGGSCRRISVSGLPCD-PLFSFIGDNARALRTLEIPRSEISD 166

Query: 864  SMVESIVKKLSNISFLDVSYCHYIGAPALEAIGNHCKSLAVLQRVMHPLTVEQMVCQDEE 685
            S+VE++  +LSN++FLD+S C  IGA ALEA G HCKSL  L+RVMHP+ +   VCQ +E
Sbjct: 167  SIVETVAPRLSNVTFLDISSCTKIGARALEAFGKHCKSLVGLRRVMHPIDLVDKVCQHDE 226

Query: 684  AHAIATTMPKLKHLELAYALVSTDAVREILFKCRQLEYLDLRGCWDVKLDEEFLKEKFSG 505
            AHAIA +MPKL+HLE+ Y L++T+AV EIL +CR L++LDLRGCW V  D++FL+E+  G
Sbjct: 227  AHAIACSMPKLRHLEMGYMLIATEAVLEILGQCRDLKFLDLRGCWTV--DDKFLRERHPG 284

Query: 504  VKVLGPHVEDSYERNIWEDCSDFSDSSSYLAWEFMAGQVGXXXXXXXXXXXXXXEMWDDE 325
            ++VLGP V+D YE + WE+CSD+SD SS  +WEFM                    +WDD 
Sbjct: 285  LRVLGPRVDDCYENSYWEECSDYSDDSSIYSWEFM-------DDDYYAVGSDDEAIWDDG 337

Query: 324  QRXXXXXLRFYEG--FNGPIGYAWP 256
            Q      +RFY G       G+ WP
Sbjct: 338  QGLENLEVRFYGGGFSESFAGFDWP 362


>ref|XP_002513950.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223547036|gb|EEF48533.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 329

 Score =  348 bits (894), Expect = 2e-93
 Identities = 181/329 (55%), Positives = 229/329 (69%), Gaps = 6/329 (1%)
 Frame = -2

Query: 1224 MEGGGELRRWDELIPDALALIFKNLNLQQILTVIPRVCKSWGKVVAGPYCWQEIDIEEWS 1045
            ME G E R WDELIPDAL LIF+NL+LQ+ILTV+PRVCKSW + V+GPYCWQEIDIEEWS
Sbjct: 1    MEDGSEYRCWDELIPDALGLIFRNLSLQEILTVVPRVCKSWNRAVSGPYCWQEIDIEEWS 60

Query: 1044 LNVEPDQLDRMIRMLITQSGGCFRKLCASGIPNNGQLISFVADHARSLHTLKLPRSDISN 865
               +P  +DRM+RMLI +S G  RKLC SGIP++  +  F+ADHA SL TL+ PRS+IS+
Sbjct: 61   NKRQPHHIDRMLRMLIARSCGSLRKLCVSGIPSDA-IFPFLADHAGSLQTLRTPRSEISD 119

Query: 864  SMVESIVKKLSNISFLDVSYCHYIGAPALEAIGNHCKSLAVLQRVMHPLTVEQMVCQDEE 685
            S+VE I  +LS I+FLDVS+C+ I A ALEAIG +CK L+ L R +   +    + QD+E
Sbjct: 120  SIVEQIAGRLSTITFLDVSHCNEISARALEAIGKNCKLLSGLCRNVELSSSANQLLQDDE 179

Query: 684  AHAIATTMPKLKHLELAY-ALVSTDAVREILFKCRQLEYLDLRGCWDVKLDEEFLKEKFS 508
            A AIA+TMPKLKHLE+AY  L++T++V +IL  C +LE+L+L GCWDVK D  FL+EKF 
Sbjct: 180  AQAIASTMPKLKHLEVAYHLLINTESVLKILSSCPELEFLNLTGCWDVKFDRNFLQEKFP 239

Query: 507  GVKVLGPHVEDSYERNIWED-CSD----FSDSSSYLAWEFMAGQVGXXXXXXXXXXXXXX 343
             +KV+GPH+ D Y+ N W D CS+    +SD+S Y AWE  +G +               
Sbjct: 240  KLKVVGPHLLDYYDMNDWGDYCSEYSDAYSDASEYFAWEIFSGDM--EDYDDDDDDDSYD 297

Query: 342  EMWDDEQRXXXXXLRFYEGFNGPIGYAWP 256
             MWDDEQR     LRFYEG      Y WP
Sbjct: 298  GMWDDEQRLEELELRFYEGNEDAGLYGWP 326


>ref|XP_003522785.1| PREDICTED: F-box protein FBW2-like isoform 1 [Glycine max]
            gi|356508075|ref|XP_003522786.1| PREDICTED: F-box protein
            FBW2-like isoform 2 [Glycine max]
          Length = 321

 Score =  344 bits (882), Expect = 4e-92
 Identities = 179/323 (55%), Positives = 218/323 (67%)
 Frame = -2

Query: 1224 MEGGGELRRWDELIPDALALIFKNLNLQQILTVIPRVCKSWGKVVAGPYCWQEIDIEEWS 1045
            ME   E R W ELIPDAL +IF NL+LQ+ +TVIPRVCKSW   V GPYCWQEIDI++WS
Sbjct: 1    MEEACEFRSWAELIPDALGVIFTNLSLQERVTVIPRVCKSWANAVTGPYCWQEIDIKDWS 60

Query: 1044 LNVEPDQLDRMIRMLITQSGGCFRKLCASGIPNNGQLISFVADHARSLHTLKLPRSDISN 865
               +PDQLDR++ MLIT+S G  RKL  SG+     + +F+A++A SLHTL+LPRS +++
Sbjct: 61   NRCQPDQLDRLLEMLITRSSGSLRKLSVSGLQTES-IFTFIAENACSLHTLRLPRSSMND 119

Query: 864  SMVESIVKKLSNISFLDVSYCHYIGAPALEAIGNHCKSLAVLQRVMHPLTVEQMVCQDEE 685
            S+VE I  +LS ISFLDVSYC  IG  ALE IG +CK L  L R MHPL       QD+E
Sbjct: 120  SIVEQIAGRLSMISFLDVSYCIKIGPYALEMIGKNCKLLEGLCRNMHPLDTASKPFQDDE 179

Query: 684  AHAIATTMPKLKHLELAYALVSTDAVREILFKCRQLEYLDLRGCWDVKLDEEFLKEKFSG 505
            A+AIA+TMPKLKHLE+AY L+ST  V +IL  C +LE+LD RGCW V LD  FLK+KF  
Sbjct: 180  AYAIASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVTLDHMFLKQKFPK 239

Query: 504  VKVLGPHVEDSYERNIWEDCSDFSDSSSYLAWEFMAGQVGXXXXXXXXXXXXXXEMWDDE 325
            +KVLGP V D+YE + W+D SD SDSS YLAW+F+AG +                MWDDE
Sbjct: 240  LKVLGPFVLDTYESDGWDDFSDVSDSSEYLAWDFVAGGM---EEYYVDDSDSYDGMWDDE 296

Query: 324  QRXXXXXLRFYEGFNGPIGYAWP 256
             R       FYEG     G  WP
Sbjct: 297  GRLDELQFGFYEGIE-DAGMYWP 318