BLASTX nr result

ID: Coptis24_contig00003329 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003329
         (1522 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281756.2| PREDICTED: uncharacterized protein LOC100251...   240   8e-61
emb|CBI25319.3| unnamed protein product [Vitis vinifera]              240   8e-61
ref|XP_002277105.1| PREDICTED: uncharacterized protein LOC100258...   232   2e-58
emb|CAN60012.1| hypothetical protein VITISV_036556 [Vitis vinifera]   232   2e-58
gb|ABK25831.1| unknown [Picea sitchensis] gi|224284468|gb|ACN399...   229   1e-57

>ref|XP_002281756.2| PREDICTED: uncharacterized protein LOC100251921 [Vitis vinifera]
          Length = 304

 Score =  240 bits (612), Expect = 8e-61
 Identities = 105/116 (90%), Positives = 110/116 (94%)
 Frame = -2

Query: 1137 NRFRRVRDVDLKHDFAFIEFSDPRDADDARYSLNGRQFDGSRIVVEFAKGGPRGAASSRE 958
            +R+ RVRDVD+KHDFAF+EFSDPRDADDARYSLNGR FDGSRI+VEFAKGGPRG   SRE
Sbjct: 32   SRYGRVRDVDMKHDFAFVEFSDPRDADDARYSLNGRDFDGSRIIVEFAKGGPRGPGGSRE 91

Query: 957  YLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKSLK 790
            YLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPK LK
Sbjct: 92   YLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLK 147


>emb|CBI25319.3| unnamed protein product [Vitis vinifera]
          Length = 278

 Score =  240 bits (612), Expect = 8e-61
 Identities = 105/116 (90%), Positives = 110/116 (94%)
 Frame = -2

Query: 1137 NRFRRVRDVDLKHDFAFIEFSDPRDADDARYSLNGRQFDGSRIVVEFAKGGPRGAASSRE 958
            +R+ RVRDVD+KHDFAF+EFSDPRDADDARYSLNGR FDGSRI+VEFAKGGPRG   SRE
Sbjct: 64   SRYGRVRDVDMKHDFAFVEFSDPRDADDARYSLNGRDFDGSRIIVEFAKGGPRGPGGSRE 123

Query: 957  YLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKSLK 790
            YLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPK LK
Sbjct: 124  YLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLK 179


>ref|XP_002277105.1| PREDICTED: uncharacterized protein LOC100258584 [Vitis vinifera]
          Length = 307

 Score =  232 bits (591), Expect = 2e-58
 Identities = 102/116 (87%), Positives = 110/116 (94%), Gaps = 1/116 (0%)
 Frame = -2

Query: 1137 NRFRRVRDVDLKHDFAFIEFSDPRDADDARYSLNGRQFDGSRIVVEFAKGGPRGAAS-SR 961
            +R+ RVRDVD+KHDFAF+EFSDPRDADDARY+LNGR FDGSRI+VEFAKGGPRG +  SR
Sbjct: 32   SRYGRVRDVDMKHDFAFVEFSDPRDADDARYNLNGRDFDGSRIIVEFAKGGPRGGSGGSR 91

Query: 960  EYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKSL 793
            EYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSP+ L
Sbjct: 92   EYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPRKL 147


>emb|CAN60012.1| hypothetical protein VITISV_036556 [Vitis vinifera]
          Length = 306

 Score =  232 bits (591), Expect = 2e-58
 Identities = 102/116 (87%), Positives = 110/116 (94%), Gaps = 1/116 (0%)
 Frame = -2

Query: 1137 NRFRRVRDVDLKHDFAFIEFSDPRDADDARYSLNGRQFDGSRIVVEFAKGGPRGAAS-SR 961
            +R+ RVRDVD+KHDFAF+EFSDPRDADDARY+LNGR FDGSRI+VEFAKGGPRG +  SR
Sbjct: 32   SRYGRVRDVDMKHDFAFVEFSDPRDADDARYNLNGRDFDGSRIIVEFAKGGPRGGSGGSR 91

Query: 960  EYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKSL 793
            EYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSP+ L
Sbjct: 92   EYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPRKL 147


>gb|ABK25831.1| unknown [Picea sitchensis] gi|224284468|gb|ACN39968.1| unknown [Picea
            sitchensis]
          Length = 316

 Score =  229 bits (584), Expect = 1e-57
 Identities = 104/118 (88%), Positives = 109/118 (92%), Gaps = 2/118 (1%)
 Frame = -2

Query: 1137 NRFRRVRDVDLKHDFAFIEFSDPRDADDARYSLNGRQFDGSRIVVEFAKGGPRGAAS--S 964
            NR+ RVRDVDLKHDFAFIEFSDPRDAD+ARY LNGR  DGSRIVVEFA+GGPRGAA   +
Sbjct: 32   NRYGRVRDVDLKHDFAFIEFSDPRDADEARYYLNGRDLDGSRIVVEFARGGPRGAAGGRT 91

Query: 963  REYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKSLK 790
            REYLGRGPPPGSGRCFNCG DGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKS +
Sbjct: 92   REYLGRGPPPGSGRCFNCGNDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKSTR 149


Top