BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003304
         (789 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277258.1| PREDICTED: 50S ribosomal protein L12, chloro...   129   9e-28
sp|P36688.1|RK12_NICSY RecName: Full=50S ribosomal protein L12, ...   124   2e-26
sp|P24929.1|RK12_TOBAC RecName: Full=50S ribosomal protein L12, ...   124   2e-26
emb|CAA44226.1| ribosomal protein L12-1a [Nicotiana tabacum]          124   2e-26
gb|ABF06704.1| Joka20 [Nicotiana plumbaginifolia]                     124   2e-26

>ref|XP_002277258.1| PREDICTED: 50S ribosomal protein L12, chloroplastic [Vitis
           vinifera]
          Length = 184

 Score =  129 bits (323), Expect = 9e-28
 Identities = 89/157 (56%), Positives = 97/157 (61%), Gaps = 6/157 (3%)
 Frame = -2

Query: 713 ASTLSTFTLRXXXXXXXXXXXPFP----KQVLISPLRKNPKFSRNATFLPPISAVV-DEK 549
           A++LST TLR            FP    KQ L  P R NPK    ATF+ PISAV   EK
Sbjct: 2   AASLSTLTLRSPSCPTLSSS--FPTHSFKQTLDFPFR-NPKIIHRATFVRPISAVAAPEK 58

Query: 548 IATIGKTLSELTLVEARSLVDWLQDELGVSXXXXXXXXXXXXXXXXXXXXXXVE-KTEFD 372
           I  IG  LS LTL EAR LVDWLQD+LGVS                      VE KTEFD
Sbjct: 59  IEKIGTELSNLTLEEARILVDWLQDKLGVSAAAFAPAAVAVAPGAVADAPAVVEEKTEFD 118

Query: 371 VVIEEVPSNARIATIKAVRSMTSLALKEAKELIEGLP 261
           V+IE+VPSNARIATIKAVR++TSLALKEAKELIEGLP
Sbjct: 119 VMIEDVPSNARIATIKAVRALTSLALKEAKELIEGLP 155


>sp|P36688.1|RK12_NICSY RecName: Full=50S ribosomal protein L12, chloroplastic; AltName:
           Full=CL12; Flags: Precursor gi|248303|gb|AAB21989.1|
           ribosomal protein L12 [Nicotiana sylvestris]
          Length = 186

 Score =  124 bits (311), Expect = 2e-26
 Identities = 80/156 (51%), Positives = 97/156 (62%), Gaps = 5/156 (3%)
 Frame = -2

Query: 713 ASTLSTFTLRXXXXXXXXXXXP---FPKQVLISPLRKNPKFSRNATFLPPISAV-VDEKI 546
           ASTLST TLR               FPK+ L  P+R     +R ATFL P++AV   EK+
Sbjct: 2   ASTLSTITLRSPSPSTATSTHASIPFPKKTLEFPIRTPKLQNRRATFLRPLAAVEAPEKV 61

Query: 545 ATIGKTLSELTLVEARSLVDWLQDELGVSXXXXXXXXXXXXXXXXXXXXXXVE-KTEFDV 369
             +G  +S LTL +A+ LV++LQD+LGV+                      VE KTEFDV
Sbjct: 62  VQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAAEAPAVVEEKTEFDV 121

Query: 368 VIEEVPSNARIATIKAVRSMTSLALKEAKELIEGLP 261
           VI+EVPSNARIATIKAVR++TSLALKEAKELIEGLP
Sbjct: 122 VIDEVPSNARIATIKAVRALTSLALKEAKELIEGLP 157


>sp|P24929.1|RK12_TOBAC RecName: Full=50S ribosomal protein L12, chloroplastic; AltName:
           Full=CL12; Flags: Precursor gi|20018|emb|CAA44214.1|
           ribosomal protein L12-1 [Nicotiana tabacum]
          Length = 186

 Score =  124 bits (311), Expect = 2e-26
 Identities = 80/156 (51%), Positives = 96/156 (61%), Gaps = 5/156 (3%)
 Frame = -2

Query: 713 ASTLSTFTLRXXXXXXXXXXXP---FPKQVLISPLRKNPKFSRNATFLPPISAV-VDEKI 546
           ASTLST TLR               FPK+ L  P+R      R ATFL P++AV   EK+
Sbjct: 2   ASTLSTITLRSPSPSTASSTHASIPFPKKALEFPIRTPKLHHRRATFLRPLAAVEAPEKV 61

Query: 545 ATIGKTLSELTLVEARSLVDWLQDELGVSXXXXXXXXXXXXXXXXXXXXXXVE-KTEFDV 369
             +G  +S LTL +A+ LV++LQD+LGV+                      VE KTEFDV
Sbjct: 62  VQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAAEAPAVVEEKTEFDV 121

Query: 368 VIEEVPSNARIATIKAVRSMTSLALKEAKELIEGLP 261
           VI+EVPSNARIATIKAVR++TSLALKEAKELIEGLP
Sbjct: 122 VIDEVPSNARIATIKAVRALTSLALKEAKELIEGLP 157


>emb|CAA44226.1| ribosomal protein L12-1a [Nicotiana tabacum]
          Length = 191

 Score =  124 bits (311), Expect = 2e-26
 Identities = 80/156 (51%), Positives = 96/156 (61%), Gaps = 5/156 (3%)
 Frame = -2

Query: 713 ASTLSTFTLRXXXXXXXXXXXP---FPKQVLISPLRKNPKFSRNATFLPPISAV-VDEKI 546
           ASTLST TLR               FPK+ L  P+R      R ATFL P++AV   EK+
Sbjct: 2   ASTLSTITLRSPSPSTASSTHASIPFPKKALEFPIRTPKLHHRRATFLRPLAAVEAPEKV 61

Query: 545 ATIGKTLSELTLVEARSLVDWLQDELGVSXXXXXXXXXXXXXXXXXXXXXXVE-KTEFDV 369
             +G  +S LTL +A+ LV++LQD+LGV+                      VE KTEFDV
Sbjct: 62  VQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAAEAPAVVEEKTEFDV 121

Query: 368 VIEEVPSNARIATIKAVRSMTSLALKEAKELIEGLP 261
           VI+EVPSNARIATIKAVR++TSLALKEAKELIEGLP
Sbjct: 122 VIDEVPSNARIATIKAVRALTSLALKEAKELIEGLP 157


>gb|ABF06704.1| Joka20 [Nicotiana plumbaginifolia]
          Length = 161

 Score =  124 bits (311), Expect = 2e-26
 Identities = 80/156 (51%), Positives = 96/156 (61%), Gaps = 5/156 (3%)
 Frame = -2

Query: 713 ASTLSTFTLRXXXXXXXXXXXP---FPKQVLISPLRKNPKFSRNATFLPPISAV-VDEKI 546
           ASTLST TLR               FPK+ L  P+R      R ATFL P++AV   EK+
Sbjct: 2   ASTLSTITLRSPSPSTATSTHASIPFPKKTLEFPIRTPKLHHRRATFLRPLAAVEAPEKV 61

Query: 545 ATIGKTLSELTLVEARSLVDWLQDELGVSXXXXXXXXXXXXXXXXXXXXXXVE-KTEFDV 369
             +G  +S LTL +A+ LV++LQD+LGV+                      VE KTEFDV
Sbjct: 62  VQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAAEAPGVVEEKTEFDV 121

Query: 368 VIEEVPSNARIATIKAVRSMTSLALKEAKELIEGLP 261
           VI+EVPSNARIATIKAVR++TSLALKEAKELIEGLP
Sbjct: 122 VIDEVPSNARIATIKAVRALTSLALKEAKELIEGLP 157