BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003281
         (918 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516772.1| Photosystem I reaction center subunit II, ch...   360   3e-97
dbj|BAF80471.1| PSI reaction center subunit II [Citrus sinensis]...   353   4e-95
dbj|BAF80479.1| PSI reaction center subunit II [Citrus sinensis]      352   5e-95
ref|XP_002281825.1| PREDICTED: photosystem I reaction center sub...   352   5e-95
ref|XP_003556041.1| PREDICTED: photosystem I reaction center sub...   338   8e-91

>ref|XP_002516772.1| Photosystem I reaction center subunit II, chloroplast precursor,
           putative [Ricinus communis] gi|223543860|gb|EEF45386.1|
           Photosystem I reaction center subunit II, chloroplast
           precursor, putative [Ricinus communis]
          Length = 208

 Score =  360 bits (923), Expect = 3e-97
 Identities = 180/210 (85%), Positives = 190/210 (90%), Gaps = 1/210 (0%)
 Frame = -2

Query: 791 MAMAAQSALFTPT-ISTPSSGNRVLVPWKQSSSLCFTSPKPLKSSIAQKTIRAAAAEGKS 615
           MAMA Q++LFTPT +STP S N  +VPWKQSS L   + KP K SIAQKTI+AAAAEGK 
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPRKYSIAQKTIKAAAAEGK- 59

Query: 614 ATTEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTGGAA 435
            T EAPVGFTPP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQ+FEMPTGGAA
Sbjct: 60  -TKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAA 118

Query: 434 IMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 255
           IMRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 119 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 178

Query: 254 REGVGINARSIGKNVNPIEVKFTGKQSYDL 165
           REGVG N RSIGKNV+PIEVKFTGKQ YDL
Sbjct: 179 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208


>dbj|BAF80471.1| PSI reaction center subunit II [Citrus sinensis]
           gi|157678950|dbj|BAF80473.1| PSI reaction center subunit
           II [Citrus sinensis]
          Length = 209

 Score =  353 bits (905), Expect = 4e-95
 Identities = 173/209 (82%), Positives = 187/209 (89%), Gaps = 2/209 (0%)
 Frame = -2

Query: 785 MAAQSALFTPTISTPSSGNRVLVPWKQSSSLCFTSPKPLKSSIAQKTIRAAAAEGKSA-- 612
           MA Q+ LFTP+I T  +   +L PWK +SS  FTSPKPL  S+AQ+T+RAAAAE K+   
Sbjct: 1   MATQAGLFTPSIITTKTSKLLLNPWKPTSSFSFTSPKPLTFSMAQRTVRAAAAEEKTEAP 60

Query: 611 TTEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTGGAAI 432
           T EAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPTGGAAI
Sbjct: 61  TKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 431 MRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 252
           MRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 251 EGVGINARSIGKNVNPIEVKFTGKQSYDL 165
           +GVG+N RSIGKNV+PIEVKFTGKQ YDL
Sbjct: 181 QGVGVNYRSIGKNVSPIEVKFTGKQVYDL 209


>dbj|BAF80479.1| PSI reaction center subunit II [Citrus sinensis]
          Length = 209

 Score =  352 bits (904), Expect = 5e-95
 Identities = 172/209 (82%), Positives = 186/209 (88%), Gaps = 2/209 (0%)
 Frame = -2

Query: 785 MAAQSALFTPTISTPSSGNRVLVPWKQSSSLCFTSPKPLKSSIAQKTIRAAAAEGKSA-- 612
           MA Q+ LFTP+I+T  +    L PWK +SS  FTSPKPL  S+ Q+T+RAA AEGK+   
Sbjct: 1   MATQAGLFTPSITTTKTSKLPLNPWKPTSSFSFTSPKPLTFSMGQRTVRAAGAEGKTEAP 60

Query: 611 TTEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTGGAAI 432
           T EAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPTGGAAI
Sbjct: 61  TKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 431 MRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 252
           MRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 251 EGVGINARSIGKNVNPIEVKFTGKQSYDL 165
           +GVG+N RSIGKNV+PIEVKFTGKQ YDL
Sbjct: 181 QGVGLNYRSIGKNVSPIEVKFTGKQVYDL 209


>ref|XP_002281825.1| PREDICTED: photosystem I reaction center subunit II, chloroplastic
           isoform 1 [Vitis vinifera]
           gi|359477510|ref|XP_003631987.1| PREDICTED: photosystem
           I reaction center subunit II, chloroplastic isoform 2
           [Vitis vinifera] gi|359477512|ref|XP_003631988.1|
           PREDICTED: photosystem I reaction center subunit II,
           chloroplastic isoform 3 [Vitis vinifera]
           gi|359477514|ref|XP_003631989.1| PREDICTED: photosystem
           I reaction center subunit II, chloroplastic isoform 4
           [Vitis vinifera] gi|147800882|emb|CAN62373.1|
           hypothetical protein VITISV_036477 [Vitis vinifera]
          Length = 204

 Score =  352 bits (904), Expect = 5e-95
 Identities = 175/209 (83%), Positives = 189/209 (90%)
 Frame = -2

Query: 791 MAMAAQSALFTPTISTPSSGNRVLVPWKQSSSLCFTSPKPLKSSIAQKTIRAAAAEGKSA 612
           MAMA Q++LFTPT+S    G+RV VPWK SSSL FT+PK  KSS+A +T   A AE ++ 
Sbjct: 1   MAMATQASLFTPTLS----GDRVTVPWKSSSSLSFTTPKLPKSSVAPRTTIRAMAE-EAP 55

Query: 611 TTEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTGGAAI 432
           T EAPVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQ+FEMPTGGAAI
Sbjct: 56  TKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAI 115

Query: 431 MRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 252
           MRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 116 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 175

Query: 251 EGVGINARSIGKNVNPIEVKFTGKQSYDL 165
           +GVG+N RSIGKNVNPIEVKFTGKQ+YDL
Sbjct: 176 QGVGVNFRSIGKNVNPIEVKFTGKQAYDL 204


>ref|XP_003556041.1| PREDICTED: photosystem I reaction center subunit II,
           chloroplastic-like [Glycine max]
          Length = 203

 Score =  338 bits (868), Expect = 8e-91
 Identities = 169/209 (80%), Positives = 183/209 (87%)
 Frame = -2

Query: 791 MAMAAQSALFTPTISTPSSGNRVLVPWKQSSSLCFTSPKPLKSSIAQKTIRAAAAEGKSA 612
           MAMA Q++LFTP +S     +R   PWKQSS+L F++ KPLK S   +TIRAAA +    
Sbjct: 1   MAMATQASLFTPPLSGLKPSDRATAPWKQSSTLSFSTSKPLKFS---RTIRAAATD---Q 54

Query: 611 TTEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTGGAAI 432
           TTEAPVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQ+FEMPTGGAAI
Sbjct: 55  TTEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAI 114

Query: 431 MRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 252
           MR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVN GR
Sbjct: 115 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNAGR 174

Query: 251 EGVGINARSIGKNVNPIEVKFTGKQSYDL 165
           +GVG N RSIGKNV+PIEVKFTGKQ YDL
Sbjct: 175 QGVGQNFRSIGKNVSPIEVKFTGKQPYDL 203