BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003255
         (1493 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containi...   586   e-165
ref|XP_002301440.1| predicted protein [Populus trichocarpa] gi|2...   584   e-164
ref|XP_002515072.1| pentatricopeptide repeat-containing protein,...   576   e-162
ref|XP_003534128.1| PREDICTED: pentatricopeptide repeat-containi...   556   e-156
ref|XP_003614316.1| Pentatricopeptide repeat-containing protein ...   546   e-153

>ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05600-like
            [Vitis vinifera]
          Length = 503

 Score =  586 bits (1510), Expect = e-165
 Identities = 277/465 (59%), Positives = 364/465 (78%)
 Frame = +2

Query: 2    SRYPKYRHNGPIYATMIDILAASGRVSEMKDLIHQMKQDSCQLRDSIFVTAITTYAKFGL 181
            S++P YRHNGP+YATMI++L +SGR++EM+++I QMKQDSC+ +DS+F + + TYA+ G+
Sbjct: 36   SKFPNYRHNGPVYATMINVLGSSGRIAEMREVIDQMKQDSCECKDSVFSSVMKTYARAGM 95

Query: 182  LDDSVSLFRNLPRFNCVNWTQSFNTLLQIMVRESDFQTAHEVYMDNSTGWEVKNQTRSIN 361
            +D++VSLF+ LP+FNCVNWT SFNTLL+I+V+ES  +TA  +++++S GWEVK++  S+N
Sbjct: 96   VDEAVSLFKTLPQFNCVNWTGSFNTLLRILVKESKLETACRLFLEHSCGWEVKSRIGSLN 155

Query: 362  LFIELLCRNNRSDLALDIFQEMNNICCYPDRDTYKVLMRGLCQDKRLNEATHVLYSMFWR 541
            L ++ LC+ NRSDLAL +FQEM   CC PD+++Y++LMRGLC+D RLNEATH+LYSMFWR
Sbjct: 156  LLMDALCQINRSDLALHVFQEMRYQCCSPDKESYRILMRGLCEDGRLNEATHLLYSMFWR 215

Query: 542  ISQKGSGEDIVVYRTLLEALCDNGHLEEAVQLLGKVLRKGLKTPKQRLQGFTLTRFLQIE 721
            ISQKG GEDI  YRTLL+ALCDNGH+EEA+++LGKVL+KGLK PK+      L+     E
Sbjct: 216  ISQKGGGEDIAAYRTLLDALCDNGHVEEALEILGKVLKKGLKAPKRCRGHLDLSYCCNGE 275

Query: 722  NVEGIKGLINEALIKGAVPSLVSYSAMAIDLYSQGRIDDANRVFDEMRGRGFNPSVSMYE 901
            ++E  KGLINEALI+G VPS+ SYSAMAIDLYS+ +I +AN+V DEMR RGF PS+S+YE
Sbjct: 276  DIERTKGLINEALIRGGVPSMASYSAMAIDLYSERKIGEANQVLDEMRDRGFKPSLSIYE 335

Query: 902  AKLEALCREGRADAAVQVIGEEMLDDNCVPTATTYKIMVKGLCDEGKSMAGIRYLDKMAK 1081
            AK+ ALCR G  + AV+VI EEM++D+CVPT   Y I++KGLC EGKS   + YL+KMA+
Sbjct: 336  AKIAALCRCGGVEEAVKVIKEEMVEDSCVPTVRLYNIVLKGLCREGKSAFAVGYLEKMAR 395

Query: 1082 QVGCVADKEIYNVLVDGLCRESRFVEACKVFEKMLGHRYWPSAVAFNRLIGGLCSEGRSY 1261
            QVGCVADKE Y++LVDGLC + RFVEA  + E+ML     P    +N LI GLC  GR Y
Sbjct: 396  QVGCVADKETYSILVDGLCCDGRFVEASGILERMLIRSSSPGVETYNTLIRGLCLMGRQY 455

Query: 1262 EAVLWLEEMASQGNCPEISVWNSLVQVVCSESIEFYASAEMLRRL 1396
            +AV+WLEEM  QG  P +SVW+SLV  VCS   E    +E L +L
Sbjct: 456  DAVIWLEEMVVQGKLPAVSVWDSLVASVCSNMTEAGVCSETLEKL 500


>ref|XP_002301440.1| predicted protein [Populus trichocarpa] gi|222843166|gb|EEE80713.1|
            predicted protein [Populus trichocarpa]
          Length = 503

 Score =  584 bits (1506), Expect = e-164
 Identities = 275/464 (59%), Positives = 355/464 (76%)
 Frame = +2

Query: 5    RYPKYRHNGPIYATMIDILAASGRVSEMKDLIHQMKQDSCQLRDSIFVTAITTYAKFGLL 184
            +YP Y HNGP+YATMI IL  S R++EMK++I QM+ DSC+ +DS+FVTAI TYA  G +
Sbjct: 37   KYPSYHHNGPVYATMISILGNSDRIAEMKEVIDQMRDDSCECKDSVFVTAIKTYASAGQI 96

Query: 185  DDSVSLFRNLPRFNCVNWTQSFNTLLQIMVRESDFQTAHEVYMDNSTGWEVKNQTRSINL 364
             ++VSLF+N+P+FNCVNWT+SFNTLLQI+V+ES  +TAH  +++NS GWEVK++ R++NL
Sbjct: 97   SEAVSLFKNIPKFNCVNWTESFNTLLQILVKESKLETAHRFFLENSCGWEVKSRIRALNL 156

Query: 365  FIELLCRNNRSDLALDIFQEMNNICCYPDRDTYKVLMRGLCQDKRLNEATHVLYSMFWRI 544
             +++LC+ NRSDLAL IFQEM+   CYP+RD+Y++LMRGLC+D RLNEATH+LYSMFWRI
Sbjct: 157  LLDVLCQRNRSDLALQIFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRI 216

Query: 545  SQKGSGEDIVVYRTLLEALCDNGHLEEAVQLLGKVLRKGLKTPKQRLQGFTLTRFLQIEN 724
            SQKGSGEDIVVYRTLL+ALCDNG +EEA+++LGK+LRKGLK PK+      L++    E+
Sbjct: 217  SQKGSGEDIVVYRTLLDALCDNGQVEEAMEILGKILRKGLKAPKRYRHRLDLSQCNNCED 276

Query: 725  VEGIKGLINEALIKGAVPSLVSYSAMAIDLYSQGRIDDANRVFDEMRGRGFNPSVSMYEA 904
            +E  K LINEALI+G VPSL SY+AMA+DLY +G+   A++V DE + RG+ PS+  YEA
Sbjct: 277  IEATKLLINEALIRGGVPSLASYTAMAVDLYCEGKTGQADKVLDETQERGYRPSLRTYEA 336

Query: 905  KLEALCREGRADAAVQVIGEEMLDDNCVPTATTYKIMVKGLCDEGKSMAGIRYLDKMAKQ 1084
            K+ ALCR+GR+  A+ VI  EM++ N VP    Y +++KGLCD G S   + YL +MAKQ
Sbjct: 337  KVTALCRQGRSGEAINVIEREMVERNSVPNVRLYNVLLKGLCDAGNSAIAVSYLKRMAKQ 396

Query: 1085 VGCVADKEIYNVLVDGLCRESRFVEACKVFEKMLGHRYWPSAVAFNRLIGGLCSEGRSYE 1264
            VGCVA++E Y +LVDGLCR+ RFVEA KV E+ML   YWP A  +N LI GL S GR YE
Sbjct: 397  VGCVANQETYGILVDGLCRDGRFVEASKVLEEMLIKSYWPPADTYNILIRGLSSMGRQYE 456

Query: 1265 AVLWLEEMASQGNCPEISVWNSLVQVVCSESIEFYASAEMLRRL 1396
            AV+WLEEM SQ   PE+ VW SLV  VC   +    S E   +L
Sbjct: 457  AVIWLEEMVSQDKLPELYVWRSLVTSVCCNMVAVDVSCETFNQL 500


>ref|XP_002515072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223545552|gb|EEF47056.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score =  576 bits (1485), Expect = e-162
 Identities = 265/468 (56%), Positives = 359/468 (76%)
 Frame = +2

Query: 5    RYPKYRHNGPIYATMIDILAASGRVSEMKDLIHQMKQDSCQLRDSIFVTAITTYAKFGLL 184
            +YP YRHNGP+YATMI IL +SGR++EMK+++ QM++DSC+ +DSIF  AI TYA+ GLL
Sbjct: 37   KYPNYRHNGPVYATMIGILGSSGRITEMKEVLDQMREDSCECKDSIFANAIKTYARVGLL 96

Query: 185  DDSVSLFRNLPRFNCVNWTQSFNTLLQIMVRESDFQTAHEVYMDNSTGWEVKNQTRSINL 364
            ++++SLF+N+P+FNCVNWT+SFNTLLQIMV+ES  + AH +++++S GWEVK++ RS+NL
Sbjct: 97   NEAISLFKNIPQFNCVNWTESFNTLLQIMVKESKLEAAHRLFLESSYGWEVKSRVRSLNL 156

Query: 365  FIELLCRNNRSDLALDIFQEMNNICCYPDRDTYKVLMRGLCQDKRLNEATHVLYSMFWRI 544
             +++LC++NRSD+AL +FQEMN   CYPDRD+Y+++M GLC+D RLNEATH+LYSMFWRI
Sbjct: 157  LMDVLCQHNRSDVALQVFQEMNYQGCYPDRDSYRIVMMGLCKDGRLNEATHLLYSMFWRI 216

Query: 545  SQKGSGEDIVVYRTLLEALCDNGHLEEAVQLLGKVLRKGLKTPKQRLQGFTLTRFLQIEN 724
            SQKGSGEDIV+YR  L+ALCD G +E+A+++LGK+LRKGLK PK+      L+      N
Sbjct: 217  SQKGSGEDIVIYRIFLDALCDIGMVEQALEVLGKILRKGLKAPKRCHPRLDLSNCNSDGN 276

Query: 725  VEGIKGLINEALIKGAVPSLVSYSAMAIDLYSQGRIDDANRVFDEMRGRGFNPSVSMYEA 904
            +E  K LINEALI+GA+PSL SY+AMA+D Y++G++  A++V DE + RGF PS+  YEA
Sbjct: 277  IETTKHLINEALIRGAIPSLSSYTAMAVDFYAEGKLSQADKVLDETQDRGFRPSLLTYEA 336

Query: 905  KLEALCREGRADAAVQVIGEEMLDDNCVPTATTYKIMVKGLCDEGKSMAGIRYLDKMAKQ 1084
            K+ ALC+EG+   A+ V+  EM++ NCVP    Y I++KGLCD   S   ++YL +MAKQ
Sbjct: 337  KVAALCKEGKVHEAINVLEVEMVEGNCVPNVRLYNILLKGLCDARNSATAVKYLKRMAKQ 396

Query: 1085 VGCVADKEIYNVLVDGLCRESRFVEACKVFEKMLGHRYWPSAVAFNRLIGGLCSEGRSYE 1264
             GCVA+KE Y +LV GLC++  F+EA ++ E+ML   YWP    FN LI GLCS GR YE
Sbjct: 397  TGCVANKETYCILVHGLCQDGGFIEASRILEEMLIKSYWPPVDTFNMLIRGLCSIGRQYE 456

Query: 1265 AVLWLEEMASQGNCPEISVWNSLVQVVCSESIEFYASAEMLRRLTTPS 1408
            A +WLEEM S    PE+SVWNSLV  +CS + +  A  E  +RL+  S
Sbjct: 457  ATMWLEEMISLDEAPELSVWNSLVTCLCSNTADIDACCETFKRLSNCS 504


>ref|XP_003534128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05600-like
            [Glycine max]
          Length = 502

 Score =  556 bits (1434), Expect = e-156
 Identities = 260/465 (55%), Positives = 361/465 (77%)
 Frame = +2

Query: 2    SRYPKYRHNGPIYATMIDILAASGRVSEMKDLIHQMKQDSCQLRDSIFVTAITTYAKFGL 181
            SRYP Y HNGP+YATMI IL  SGR++EM+D+I QMK+DSC+ +DS+FV+ I TYA  GL
Sbjct: 36   SRYPNYYHNGPVYATMISILGTSGRLNEMRDVIEQMKEDSCECKDSVFVSVIKTYANAGL 95

Query: 182  LDDSVSLFRNLPRFNCVNWTQSFNTLLQIMVRESDFQTAHEVYMDNSTGWEVKNQTRSIN 361
            +D+++SL++++PRFNCVNWT+SFNT+LQIMV+E+  + AH +++++S GWEV++  R++N
Sbjct: 96   VDEAISLYKSIPRFNCVNWTESFNTMLQIMVKENRLEIAHRLFVESSCGWEVRSLVRALN 155

Query: 362  LFIELLCRNNRSDLALDIFQEMNNICCYPDRDTYKVLMRGLCQDKRLNEATHVLYSMFWR 541
            L +  LC+ +RSDLAL +FQEM+   CYP+RD+Y +LM+GLCQD+RL+EATH+LYSMFWR
Sbjct: 156  LLMYALCQKSRSDLALQLFQEMDYQSCYPNRDSYAILMKGLCQDRRLHEATHLLYSMFWR 215

Query: 542  ISQKGSGEDIVVYRTLLEALCDNGHLEEAVQLLGKVLRKGLKTPKQRLQGFTLTRFLQIE 721
            ISQKG+GEDIVVYRTLL+ALCD G  EEA ++LGK+LRKGLK PK+      L +    +
Sbjct: 216  ISQKGNGEDIVVYRTLLDALCDAGKFEEAEEILGKILRKGLKAPKRCHSRLDLDQLSDGK 275

Query: 722  NVEGIKGLINEALIKGAVPSLVSYSAMAIDLYSQGRIDDANRVFDEMRGRGFNPSVSMYE 901
            ++E  K +I+EALIKG+VPSL SY+AMA+DLYS+G+ID+A++V  EM+ RGF P+ S++E
Sbjct: 276  DIESAKRMIHEALIKGSVPSLASYNAMAVDLYSEGKIDEADKVIIEMQVRGFKPTHSIFE 335

Query: 902  AKLEALCREGRADAAVQVIGEEMLDDNCVPTATTYKIMVKGLCDEGKSMAGIRYLDKMAK 1081
            AK+ ALC+  + D A++VI E+M+  NC+PTA  Y I++K LC+ G S A +  L+KM+ 
Sbjct: 336  AKVAALCKVSKVDEAIKVIEEDMVKVNCLPTAKVYNILLKNLCNVGNSTAILESLNKMSS 395

Query: 1082 QVGCVADKEIYNVLVDGLCRESRFVEACKVFEKMLGHRYWPSAVAFNRLIGGLCSEGRSY 1261
            +VGC  D++ Y++L++ LC E R++EA ++ EKM    YWP   ++N LI GLCS GR Y
Sbjct: 396  KVGCTGDRDTYSILLEMLCGERRYLEASQLLEKMSIKSYWPCTNSYNSLIRGLCSIGRQY 455

Query: 1262 EAVLWLEEMASQGNCPEISVWNSLVQVVCSESIEFYASAEMLRRL 1396
            EAV+WLE+M SQG  PEISVWNSL  + C+ S +   S+E   RL
Sbjct: 456  EAVMWLEDMISQGKLPEISVWNSLASLFCN-SEKIKVSSETFSRL 499


>ref|XP_003614316.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355515651|gb|AES97274.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 504

 Score =  546 bits (1408), Expect = e-153
 Identities = 253/452 (55%), Positives = 353/452 (78%)
 Frame = +2

Query: 5    RYPKYRHNGPIYATMIDILAASGRVSEMKDLIHQMKQDSCQLRDSIFVTAITTYAKFGLL 184
            +YPKY HNGP+YATMI+IL  SGR+ EM DLI QMK+DSC+ +DS+FV+AI TYAK GL+
Sbjct: 39   KYPKYSHNGPVYATMINILGTSGRLKEMSDLIEQMKEDSCECKDSVFVSAIKTYAKEGLV 98

Query: 185  DDSVSLFRNLPRFNCVNWTQSFNTLLQIMVRESDFQTAHEVYMDNSTGWEVKNQTRSINL 364
            D+++SL++N+P+FNCVNWTQSFNTLL+IMV E+  + AH +++++S GWEVK++ +++NL
Sbjct: 99   DEAISLYKNIPQFNCVNWTQSFNTLLEIMVNENKLEDAHSLFVESSCGWEVKSRVQALNL 158

Query: 365  FIELLCRNNRSDLALDIFQEMNNICCYPDRDTYKVLMRGLCQDKRLNEATHVLYSMFWRI 544
             +  LCR +RSDLAL IFQEM+   CYP+R++Y ++M+GLCQDKRL+EATH+LYSMFWRI
Sbjct: 159  LMYALCRKSRSDLALQIFQEMDYQGCYPNRESYLIVMKGLCQDKRLHEATHLLYSMFWRI 218

Query: 545  SQKGSGEDIVVYRTLLEALCDNGHLEEAVQLLGKVLRKGLKTPKQRLQGFTLTRFLQIEN 724
            S KG+GEDIV+YRTLL+ALCDNG  +EAV++LGK+LRKGLK PK+      +++    ++
Sbjct: 219  SLKGNGEDIVIYRTLLDALCDNGKFDEAVEILGKILRKGLKAPKRCYNRLDISQCGDGKD 278

Query: 725  VEGIKGLINEALIKGAVPSLVSYSAMAIDLYSQGRIDDANRVFDEMRGRGFNPSVSMYEA 904
             E  K  I+EAL++G+VPS  SY++MA+DLY +G+ID+A++V  EM+ R F P  S++EA
Sbjct: 279  AEVTKRWIHEALVRGSVPSTASYTSMAVDLYEEGKIDEADKVIIEMKDRRFKPKHSIFEA 338

Query: 905  KLEALCREGRADAAVQVIGEEMLDDNCVPTATTYKIMVKGLCDEGKSMAGIRYLDKMAKQ 1084
            K+ ALC+ G+ D A++VI E+M++ NC+P AT Y I++K L   G S + +  L+KM+K+
Sbjct: 339  KVAALCKVGKVDEAIKVIEEDMVEVNCLPNATVYTILLKNLGGVGNSTSVLESLNKMSKK 398

Query: 1085 VGCVADKEIYNVLVDGLCRESRFVEACKVFEKMLGHRYWPSAVAFNRLIGGLCSEGRSYE 1264
            V C+ADKE Y +L++ LCRE +++EA ++ E+M    YWP A  +N LI GLCS GR YE
Sbjct: 399  VNCMADKETYCILLEMLCRERKYLEASQLLEQMSIKSYWPCANTYNLLIEGLCSLGRQYE 458

Query: 1265 AVLWLEEMASQGNCPEISVWNSLVQVVCSESI 1360
            AV+WLE+M SQG  PEISVWNSL    C+  +
Sbjct: 459  AVMWLEDMISQGKLPEISVWNSLASSFCNSGM 490