BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003246
         (481 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containi...   266   1e-69
emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]   265   4e-69
ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containi...   250   7e-65
ref|XP_002301973.1| predicted protein [Populus trichocarpa] gi|2...   246   1e-63
gb|AAF79892.1|AC022472_1 Contains similarity to an unknown prote...   231   5e-59

>ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  266 bits (681), Expect = 1e-69
 Identities = 126/159 (79%), Positives = 142/159 (89%)
 Frame = -2

Query: 477 EHGIEARMEHYACMVTLLSRAGRLEEAYAMIKEMRSEPDACVWGALLSSCRVHGNVSLGE 298
           ++GIEAR+EHYACMVTLLSRAG+LE+AYAMI+ M   PDACVWGALLSSCRVH NVSLGE
Sbjct: 516 KYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGE 575

Query: 297 VAANQLFELEPNNAGNYVLLSNIYAAKGMWKEVNRVRGVMENLGLRKNPGCSWIEVKNKV 118
           VAA +LFELEP+N GNY+LLSNIYA+KGMW EVNRVR +M+N GLRKNPGCSWIEVKNKV
Sbjct: 576 VAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKV 635

Query: 117 HTLLAGDRSHPNMAQIIEKLERLGMEMKKSGYRPDTNFV 1
           H LLAGD+SHP M QIIEKL++L MEMKK GY P+ NFV
Sbjct: 636 HMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFV 674


>emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  265 bits (676), Expect = 4e-69
 Identities = 125/159 (78%), Positives = 141/159 (88%)
 Frame = -2

Query: 477 EHGIEARMEHYACMVTLLSRAGRLEEAYAMIKEMRSEPDACVWGALLSSCRVHGNVSLGE 298
           ++GIEAR+EHYACMVTLLSRAG+LE+AYAMI+ M   PDACVWGALLSSCRVH NVSLGE
Sbjct: 516 KYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGE 575

Query: 297 VAANQLFELEPNNAGNYVLLSNIYAAKGMWKEVNRVRGVMENLGLRKNPGCSWIEVKNKV 118
           VAA +LFELEP+N GNY+LLSNIYA+KGMW EVNRVR +M+N GLRKNPGCSWIEVKNKV
Sbjct: 576 VAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKV 635

Query: 117 HTLLAGDRSHPNMAQIIEKLERLGMEMKKSGYRPDTNFV 1
           H LLAGD+SHP M QIIE L++L MEMKK GY P+ NFV
Sbjct: 636 HMLLAGDKSHPQMTQIIENLDKLSMEMKKLGYFPEINFV 674


>ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  250 bits (639), Expect = 7e-65
 Identities = 117/160 (73%), Positives = 138/160 (86%)
 Frame = -2

Query: 480 QEHGIEARMEHYACMVTLLSRAGRLEEAYAMIKEMRSEPDACVWGALLSSCRVHGNVSLG 301
           +EHGIE +MEHYAC+VTLLSR G+LEEAY++IKEM  EPDACVWGALLSSCRVH N+SLG
Sbjct: 505 EEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLG 564

Query: 300 EVAANQLFELEPNNAGNYVLLSNIYAAKGMWKEVNRVRGVMENLGLRKNPGCSWIEVKNK 121
           E+AA +LF LEP N GNY+LLSNIYA+KG+W E NR+R VM++ GLRKNPG SWIEV +K
Sbjct: 565 EIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHK 624

Query: 120 VHTLLAGDRSHPNMAQIIEKLERLGMEMKKSGYRPDTNFV 1
           VH LLAGD+SHP M  I+EKL++L M+MKKSGY P TNFV
Sbjct: 625 VHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFV 664


>ref|XP_002301973.1| predicted protein [Populus trichocarpa] gi|222843699|gb|EEE81246.1|
           predicted protein [Populus trichocarpa]
          Length = 716

 Score =  246 bits (629), Expect = 1e-63
 Identities = 116/160 (72%), Positives = 135/160 (84%)
 Frame = -2

Query: 480 QEHGIEARMEHYACMVTLLSRAGRLEEAYAMIKEMRSEPDACVWGALLSSCRVHGNVSLG 301
           + HG+EARMEHY+CMVTLL R+GRLEEAYAMIK+M  EPD+CVWGALLSSCRVH  V LG
Sbjct: 473 RNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLG 532

Query: 300 EVAANQLFELEPNNAGNYVLLSNIYAAKGMWKEVNRVRGVMENLGLRKNPGCSWIEVKNK 121
           E+AA ++FELEP N GNY+LLSNIYA+K MW EV+ VR +M + GL+KNPG SWIE+KNK
Sbjct: 533 EIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNK 592

Query: 120 VHTLLAGDRSHPNMAQIIEKLERLGMEMKKSGYRPDTNFV 1
           VH LLAGD SHP M QIIEKL +L +EMKKSGY P T+FV
Sbjct: 593 VHMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFV 632


>gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  231 bits (589), Expect = 5e-59
 Identities = 104/159 (65%), Positives = 133/159 (83%)
 Frame = -2

Query: 480 QEHGIEARMEHYACMVTLLSRAGRLEEAYAMIKEMRSEPDACVWGALLSSCRVHGNVSLG 301
           +E+GI+ R+EHY+CMV LL RAG+L+EAY +IKEM  EPD+CVWGALL+SCR+  NV L 
Sbjct: 517 EEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLA 576

Query: 300 EVAANQLFELEPNNAGNYVLLSNIYAAKGMWKEVNRVRGVMENLGLRKNPGCSWIEVKNK 121
           E+AA +LF LEP N G YVLLSNIYAAKGMW EV+ +R  ME+LGL+KNPGCSWI+VKN+
Sbjct: 577 EIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNR 636

Query: 120 VHTLLAGDRSHPNMAQIIEKLERLGMEMKKSGYRPDTNF 4
           V+TLLAGD+SHP + QI EK++ +  EM+KSG+RP+ +F
Sbjct: 637 VYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDF 675