BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003224
         (1886 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. ...   180   3e-62
emb|CAN78022.1| hypothetical protein VITISV_015518 [Vitis vinifera]   196   4e-60
gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsi...   182   4e-60
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]         177   2e-59
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]   178   3e-59

>gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. pekinensis]
          Length = 2301

 Score =  180 bits (456), Expect(2) = 3e-62
 Identities = 86/185 (46%), Positives = 120/185 (64%), Gaps = 1/185 (0%)
 Frame = -2

Query: 1648 RLAFGRSARVSPSPFYLVHSDIWGPSPVPSVTGYRYYISFVDDYSRFTWKYPLAR*SDAY 1469
            RL F  S  V+  P   +H D+WGPSPV SV  ++YY+  +D+YSR+ W YP+ + SD +
Sbjct: 506  RLPFSASQFVATRPLERIHCDVWGPSPVVSVQEFKYYVVLIDNYSRYCWMYPMKKKSDFH 565

Query: 1468 GCFVKLKAMVENVFGCQISYFQSDGGGEYRYSPFELLLEQSGITHRFSCPHTPPQNGVAE 1289
              F+  +++V+N F   I  FQ DGGGE+  + F L L+++GI    SCPHTP QNG+AE
Sbjct: 566  SIFIAFQSLVQNQFHTTIGTFQCDGGGEFISNQFLLHLQKNGIQQLLSCPHTPQQNGLAE 625

Query: 1288 RKHRHIVESGLALLFHSNCPEYLWMDAFMTAVFLMNRLP-SKTLSNKSPFEVIYGGLHVF 1112
            R+HRHIVE GL+LLF S  P+  W++AFMTA FL N LP S   +  SP+E ++     +
Sbjct: 626  RRHRHIVELGLSLLFQSRAPQKYWVEAFMTANFLSNLLPHSANTNTASPYEKLHNKSPSY 685

Query: 1111 AGLRL 1097
              LR+
Sbjct: 686  DALRI 690



 Score = 87.0 bits (214), Expect(2) = 3e-62
 Identities = 41/69 (59%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
 Frame = -3

Query: 1122 YTFLRVFGCACYPVL--FTSKV*SKICPMCVFLGYSSQHKGYRCLDPSSGGVYISRNVVF 949
            Y  LR+FGCAC+P+L  +T          CVFLGYS ++KGYRCL P++G VYISR+V+F
Sbjct: 685  YDALRIFGCACFPMLRPYTQNKLDPRSLQCVFLGYSEKYKGYRCLLPATGRVYISRHVIF 744

Query: 948  DESLFPFAD 922
            DES FPFAD
Sbjct: 745  DESKFPFAD 753


>emb|CAN78022.1| hypothetical protein VITISV_015518 [Vitis vinifera]
          Length = 1501

 Score =  196 bits (498), Expect(2) = 4e-60
 Identities = 90/174 (51%), Positives = 119/174 (68%)
 Frame = -2

Query: 1648 RLAFGRSARVSPSPFYLVHSDIWGPSPVPSVTGYRYYISFVDDYSRFTWKYPLAR*SDAY 1469
            RL + R+   S     L+H D+WGPSP+ S +G+ YY+ F+DDYSRFTW YPL   SD +
Sbjct: 451  RLPYSRNEHRSSHVLDLIHCDLWGPSPIKSNSGFLYYVIFIDDYSRFTWLYPLKFKSDFF 510

Query: 1468 GCFVKLKAMVENVFGCQISYFQSDGGGEYRYSPFELLLEQSGITHRFSCPHTPPQNGVAE 1289
              F++ +  VEN    +I  FQSDGG E+  + F+  L  SGI H+ SCP+TP QNG AE
Sbjct: 511  DIFLQFQKFVENQHSARIKVFQSDGGAEFTNTCFKAHLRTSGIHHQLSCPYTPAQNGRAE 570

Query: 1288 RKHRHIVESGLALLFHSNCPEYLWMDAFMTAVFLMNRLPSKTLSNKSPFEVIYG 1127
            RKHRH+ E+GLALLFHS+     W+DAF TA +++NRLP+  L  KSPFE++YG
Sbjct: 571  RKHRHVTETGLALLFHSHLSPRFWVDAFSTATYIINRLPTPLLGGKSPFELLYG 624



 Score = 63.9 bits (154), Expect(2) = 4e-60
 Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
 Frame = -3

Query: 1122 YTFLRVFGCACYPVLFTSKV*SKICPM---CVFLGYSSQHKGYRCLDPSSGGVYISRNVV 952
            Y     FGC  YP L    + +K+ P    C+FLGYS  HKG+RCLDP++  +YI+R+  
Sbjct: 629  YENFHPFGCRVYPCL-RDYMPNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRLYITRHAQ 687

Query: 951  FDESLFP 931
            FDE+ FP
Sbjct: 688  FDETHFP 694



 Score = 73.2 bits (178), Expect = 2e-10
 Identities = 48/120 (40%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
 Frame = -3

Query: 402  HRASQPSVLSRHPTITRSMDG---TRRP-KLFLCTRNPLPSAHLSHVADDAHR*PSFFFY 235
            H A   S L  HP ITR+  G   TR P  L +   + L  A L+              +
Sbjct: 776  HAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLLXALLASTEPKG--------F 827

Query: 234  TEAVKHPHRRAAMDDELNALLKNGTWSLLPSSPSMNIIGCKWVFKVKEKSDGSIFRYKAR 55
              A K+P   AAMD+E+ AL +NGTW L+P   + NI+G KWVF+ K   DGS+ R KAR
Sbjct: 828  KSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTKYLPDGSVERLKAR 887


>gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1149

 Score =  182 bits (462), Expect(2) = 4e-60
 Identities = 87/184 (47%), Positives = 121/184 (65%), Gaps = 1/184 (0%)
 Frame = -2

Query: 1648 RLAFGRSARVSPSPFYLVHSDIWGPSPVPSVTGYRYYISFVDDYSRFTWKYPLAR*SDAY 1469
            RL F  S  ++  P   VH D+WGP+PV S+ G++YY+ F+D+ SRF W YPL   SD  
Sbjct: 490  RLPFIASDFIASRPLERVHCDLWGPAPVSSIQGFQYYVIFIDNRSRFCWFYPLKHKSDFC 549

Query: 1468 GCFVKLKAMVENVFGCQISYFQSDGGGEYRYSPFELLLEQSGITHRFSCPHTPPQNGVAE 1289
              F+K ++ VEN+   +I  FQSDGGGE+  + F   L++SGI H  SCPHTP QNG+AE
Sbjct: 550  SLFMKFQSFVENLLQTKIGTFQSDGGGEFTSNRFLQHLQESGIQHYISCPHTPQQNGLAE 609

Query: 1288 RKHRHIVESGLALLFHSNCPEYLWMDAFMTAVFLMNRLPSKTL-SNKSPFEVIYGGLHVF 1112
            RKHR + E GL L+F S  P+  W++AF TA FL N LP+  L S+ +P++V++G    +
Sbjct: 610  RKHRQLTERGLTLMFQSKAPQRFWVEAFFTANFLSNLLPTSALDSSTTPYQVLFGKAPDY 669

Query: 1111 AGLR 1100
            + LR
Sbjct: 670  SALR 673



 Score = 77.8 bits (190), Expect(2) = 4e-60
 Identities = 37/71 (52%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
 Frame = -3

Query: 1125 DYTFLRVFGCACYPVLFTSKV*SKICPM---CVFLGYSSQHKGYRCLDPSSGGVYISRNV 955
            DY+ LR FGCAC+P L  +   +K  P    C+FLGY+ ++KGYRC  P +  VY+SR+V
Sbjct: 668  DYSALRTFGCACFPTL-RAYARNKFDPRSLKCIFLGYTEKYKGYRCFFPPTNRVYLSRHV 726

Query: 954  VFDESLFPFAD 922
            +FDES FPF D
Sbjct: 727  LFDESSFPFID 737


>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  177 bits (448), Expect(2) = 2e-59
 Identities = 85/173 (49%), Positives = 112/173 (64%)
 Frame = -2

Query: 1648 RLAFGRSARVSPSPFYLVHSDIWGPSPVPSVTGYRYYISFVDDYSRFTWKYPLAR*SDAY 1469
            RL F  S   +  P   VH D+WGPSPV S  G++YY  FVDD+SRF+W +PL   S   
Sbjct: 500  RLQFFSSDFRALKPLDRVHCDLWGPSPVVSNQGFKYYAVFVDDFSRFSWFFPLRMKSKFI 559

Query: 1468 GCFVKLKAMVENVFGCQISYFQSDGGGEYRYSPFELLLEQSGITHRFSCPHTPPQNGVAE 1289
              F+  + +VEN  G +I  FQSDGGGE+  +  +    + GI HR SCP+TP QNGVAE
Sbjct: 560  SVFIAYQKLVENQLGTKIKEFQSDGGGEFTSNKLKEHFREHGIHHRISCPYTPQQNGVAE 619

Query: 1288 RKHRHIVESGLALLFHSNCPEYLWMDAFMTAVFLMNRLPSKTLSNKSPFEVIY 1130
            RKHRH+VE GL++L+HS+ P   W++AF TA +L N LPS  L   SP+E ++
Sbjct: 620  RKHRHLVELGLSMLYHSHTPLKFWVEAFFTANYLSNLLPSSVLKEISPYETLF 672



 Score = 81.3 bits (199), Expect(2) = 2e-59
 Identities = 42/71 (59%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
 Frame = -3

Query: 1125 DYTFLRVFGCACYPVLFTSKV*SKICP---MCVFLGYSSQHKGYRCLDPSSGGVYISRNV 955
            DYT LRVFG ACYP L      +K  P    CVFLGY +Q+KGYRCL P +G VYISR+V
Sbjct: 677  DYTPLRVFGTACYPCL-RPLAKNKFDPRSLQCVFLGYHNQYKGYRCLYPPTGKVYISRHV 735

Query: 954  VFDESLFPFAD 922
            +FDE+ FPF +
Sbjct: 736  IFDEAQFPFKE 746



 Score = 74.3 bits (181), Expect = 1e-10
 Identities = 45/112 (40%), Positives = 64/112 (57%)
 Frame = -3

Query: 390  QPSVLSRHPTITRSMDGTRRPKLFLCTRNPLPSAHLSHVADDAHR*PSFFFYTEAVKHPH 211
            Q S+ + HP ITRS DG ++P       NP  +  +S  + D  +       T A+KHP 
Sbjct: 842  QGSLENLHPMITRSKDGIQKP-------NPRYALIVSKSSFDEPK-----TITTAMKHPS 889

Query: 210  RRAAMDDELNALLKNGTWSLLPSSPSMNIIGCKWVFKVKEKSDGSIFRYKAR 55
              AA+ DE++ +    TWSL+P++  MNI+  KWVFK K K DG+I + KAR
Sbjct: 890  WNAAVMDEIDRIHMLNTWSLVPATEDMNILTSKWVFKTKLKPDGTIDKLKAR 941


>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
          Length = 1449

 Score =  178 bits (452), Expect(2) = 3e-59
 Identities = 87/182 (47%), Positives = 120/182 (65%), Gaps = 3/182 (1%)
 Frame = -2

Query: 1648 RLAFGRSARVSPSPFYLVHSDIWGPSPVPSVTGYRYYISFVDDYSRFTWKYPLAR*SDAY 1469
            +L F      +  P  L+H+D+WGP  +PS TG RY+I FVDD+SRF+W YPL     A 
Sbjct: 563  KLPFNVXVSRASHPLALLHADLWGPXSIPSTTGARYFILFVDDFSRFSWIYPLHSKDQAL 622

Query: 1468 GCFVKLKAMVENVFGCQISYFQSDGGGEYRYSPFELLLEQSGITHRFSCPHTPPQNGVAE 1289
              F+K K++VEN F  +I   +SD GGE++   F   L   GI  +FSCP+TP QNG AE
Sbjct: 623  SVFIKFKSLVENQFNSRIQCLRSDNGGEFK--AFSSYLATHGIKSQFSCPYTPEQNGRAE 680

Query: 1288 RKHRHIVESGLALLFHSNCPEYLWMDAFMTAVFLMNRLPSKTLSNKSPFEVIYG---GLH 1118
            RK RHI+E+GLALL  ++ P   W+ AF TA+FL+NRLP+K L+ +SPF++++G     H
Sbjct: 681  RKLRHIIETGLALLATASLPFKFWLYAFHTAIFLINRLPTKVLNYQSPFQILFGKSPNYH 740

Query: 1117 VF 1112
            +F
Sbjct: 741  IF 742



 Score = 78.6 bits (192), Expect(2) = 3e-59
 Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
 Frame = -3

Query: 1125 DYTFLRVFGCACYPVL--FTSKV*SKICPMCVFLGYSSQHKGYRCLDPSSGGVYISRNVV 952
            +Y   ++FGC CYP +  +     S     CVFLGYSS HKGY CL+P +G +Y++R+VV
Sbjct: 738  NYHIFKIFGCLCYPYIRPYNKNKLSYRSSQCVFLGYSSNHKGYMCLNPLTGRLYVTRHVV 797

Query: 951  FDESLFPFADGKPL*SYSRKGLLITI-SPTFIAFGLTPGSLLMLH 820
            F E++FPF       +  +   ++TI +P F+     P S L  H
Sbjct: 798  FHETVFPFQS-----TPDQSSSVVTIPTPAFLPCSSPPVSSLRSH 837



 Score = 82.4 bits (202), Expect = 4e-13
 Identities = 45/113 (39%), Positives = 68/113 (60%)
 Frame = -3

Query: 393  SQPSVLSRHPTITRSMDGTRRPKLFLCTRNPLPSAHLSHVADDAHR*PSFFFYTEAVKHP 214
            S+P   ++HP +TR+ +G  + K++        S+H+S         P+ F  T+AVK  
Sbjct: 871  SEPHPTNQHPMVTRAKNGISKKKVYF-------SSHISE--------PTTF--TQAVKDS 913

Query: 213  HRRAAMDDELNALLKNGTWSLLPSSPSMNIIGCKWVFKVKEKSDGSIFRYKAR 55
            +   AM+ E +AL +N TW L+P   + NIIGCKWV+K+K K DG++ RYKAR
Sbjct: 914  NWVLAMEKEFSALQRNNTWHLVPPPSNGNIIGCKWVYKLKYKPDGTVDRYKAR 966