BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003201
         (1294 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272817.1| PREDICTED: U3 small nucleolar RNA-associated...   112   3e-22
ref|XP_002459212.1| hypothetical protein SORBIDRAFT_02g000660 [S...   107   7e-21
ref|XP_003549767.1| PREDICTED: U3 small nucleolar RNA-associated...    99   2e-20
ref|XP_002310740.1| predicted protein [Populus trichocarpa] gi|2...    99   3e-18
ref|XP_003529637.1| PREDICTED: U3 small nucleolar RNA-associated...    94   1e-17

>ref|XP_002272817.1| PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Vitis
            vinifera] gi|302144122|emb|CBI23227.3| unnamed protein
            product [Vitis vinifera]
          Length = 652

 Score =  112 bits (279), Expect = 3e-22
 Identities = 59/121 (48%), Positives = 77/121 (63%)
 Frame = +3

Query: 927  EIRAFCQDAFPVSLYAKFWMDVISLEGNNTKISGSAPSNFSVEFLSDLLKVYEKAESMGC 1106
            E   F   A   +LY KF MD I            + S  +V  LS LL VYEKAE+MGC
Sbjct: 355  EALKFLPSAVMFNLYTKFLMDAIVSREKTKNSEPFSTSEHTVGSLSHLLMVYEKAENMGC 414

Query: 1107 MTEDLAYQYISLYVLVGRLKEARTMAERLCE*KISGAVKLWILRISIEMKWITSKSSSLA 1286
            +TEDLA Q++SLY+ +G+L EAR +AE+ C  K SGAV LW+LR+S+EMK++T K  S +
Sbjct: 415  LTEDLACQHVSLYLQLGKLDEARKLAEKFCNGKFSGAVYLWLLRVSVEMKYVTRKCPSPS 474

Query: 1287 K 1289
            K
Sbjct: 475  K 475


>ref|XP_002459212.1| hypothetical protein SORBIDRAFT_02g000660 [Sorghum bicolor]
            gi|241922589|gb|EER95733.1| hypothetical protein
            SORBIDRAFT_02g000660 [Sorghum bicolor]
          Length = 682

 Score =  107 bits (267), Expect = 7e-21
 Identities = 61/113 (53%), Positives = 81/113 (71%), Gaps = 3/113 (2%)
 Frame = +3

Query: 963  SLYAKFWMDVISLEGNNTKISGSAPSNFSV-EFLSDLLKVYEKAESMGCMTEDLAYQYIS 1139
            SLYAKFWMDV+  +  ++ I+    S F   EF S +LKVYE AES GC+TEDLA QYIS
Sbjct: 396  SLYAKFWMDVLYPDREDS-ITLFEDSEFDASEFTSSILKVYENAESCGCLTEDLACQYIS 454

Query: 1140 LYVLVGRLKEARTMAERLCE*KISGAVKLWILRISIEMKWITSK--SSSLAKD 1292
            LY+ + RL+EA+T+AE+LC+  +S A KLW LR S+E+  I +   SSSL+K+
Sbjct: 455  LYLKLERLEEAKTLAEKLCDGPLSNAAKLWSLRASMEINSIATAPGSSSLSKE 507


>ref|XP_003549767.1| PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog
            [Glycine max]
          Length = 649

 Score = 99.0 bits (245), Expect(2) = 2e-20
 Identities = 51/106 (48%), Positives = 78/106 (73%)
 Frame = +3

Query: 963  SLYAKFWMDVISLEGNNTKISGSAPSNFSVEFLSDLLKVYEKAESMGCMTEDLAYQYISL 1142
            SLYA F  D+I+ +   T I+GS  S  +V ++S LL +YE+AESMGC+TEDLA +++SL
Sbjct: 366  SLYANFLTDIIAPKEGETDINGS--SGCAVNYISHLLSIYERAESMGCITEDLACKHVSL 423

Query: 1143 YVLVGRLKEARTMAERLCE*KISGAVKLWILRISIEMKWITSKSSS 1280
            ++ + +L EA+ +A +LC  K++ +V+LW LRI+IE++ IT  SSS
Sbjct: 424  HLQLRQLDEAQKLAAKLCSGKLAESVELWGLRITIEIRCITGSSSS 469



 Score = 27.7 bits (60), Expect(2) = 2e-20
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +1

Query: 775 FAIMWRIWLDWNRRHFEGKAMDSQKVMLTIEGTCDEGHFT*FVIHIYEEALKYVPSAKML 954
           F+     W DW  RH     +  + ++  +E            + +YEEALK VPS  M 
Sbjct: 317 FSTQPEFW-DWLARHECDLEISEEGIIPQVEKA----------VQVYEEALKNVPSGTMF 365

Query: 955 SQF 963
           S +
Sbjct: 366 SLY 368


>ref|XP_002310740.1| predicted protein [Populus trichocarpa] gi|222853643|gb|EEE91190.1|
            predicted protein [Populus trichocarpa]
          Length = 643

 Score = 98.6 bits (244), Expect = 3e-18
 Identities = 55/122 (45%), Positives = 77/122 (63%)
 Frame = +3

Query: 927  EIRAFCQDAFPVSLYAKFWMDVISLEGNNTKISGSAPSNFSVEFLSDLLKVYEKAESMGC 1106
            E   F       +LY KF MD I+ +G       S  S+ + +++S LL VYEKA+ +G 
Sbjct: 347  EALQFLPSPMMFNLYIKFLMDAIAPKGGEN--DPSKVSSPTEDYISHLLVVYEKADVVGY 404

Query: 1107 MTEDLAYQYISLYVLVGRLKEARTMAERLCE*KISGAVKLWILRISIEMKWITSKSSSLA 1286
            MTEDLA QY+S Y+ +GR  EAR +A+RLC  K+S + KLWILR S+E+K  T  +S+ +
Sbjct: 405  MTEDLACQYVSFYLQLGRFDEARKLADRLCSGKLSDSEKLWILRASMEIKSFTDDTSAPS 464

Query: 1287 KD 1292
            KD
Sbjct: 465  KD 466


>ref|XP_003529637.1| PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog
            [Glycine max]
          Length = 655

 Score = 93.6 bits (231), Expect(2) = 1e-17
 Identities = 47/104 (45%), Positives = 74/104 (71%)
 Frame = +3

Query: 966  LYAKFWMDVISLEGNNTKISGSAPSNFSVEFLSDLLKVYEKAESMGCMTEDLAYQYISLY 1145
            LYA F  D+++ +   T I+GS  S  +  ++S LL +YE+AESMGC+TEDLA +++SL+
Sbjct: 374  LYANFLTDIVAHKEGETNINGS--SGHAANYISHLLLIYERAESMGCITEDLACKHVSLH 431

Query: 1146 VLVGRLKEARTMAERLCE*KISGAVKLWILRISIEMKWITSKSS 1277
            + + +L EAR +A +LC  K++ +V+LW LRI+IE++  T  SS
Sbjct: 432  LQLRQLDEARKLAAKLCSGKLAESVELWGLRITIEIRCTTKSSS 475



 Score = 23.5 bits (49), Expect(2) = 1e-17
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 904 IHIYEEALKYVPSAKM 951
           + +YEEAL+ VPS  M
Sbjct: 356 VQVYEEALENVPSGTM 371