BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003148
         (1861 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004144262.1| PREDICTED: putative pentatricopeptide repeat...   325   e-116
ref|XP_002322859.1| predicted protein [Populus trichocarpa] gi|2...   332   e-114
ref|XP_003614047.1| hypothetical protein MTR_5g044120 [Medicago ...   324   e-113
ref|XP_003517831.1| PREDICTED: putative pentatricopeptide repeat...   331   e-112
ref|XP_002274259.1| PREDICTED: putative pentatricopeptide repeat...   334   e-112

>ref|XP_004144262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At1g26500-like [Cucumis sativus]
          Length = 505

 Score =  325 bits (834), Expect(2) = e-116
 Identities = 162/228 (71%), Positives = 189/228 (82%), Gaps = 5/228 (2%)
 Frame = +3

Query: 624  LKLFRLV-----GDLGLSSYRLVVNWLCKKGMVLQSYVLFDEMIKRGIHADNAMLASLVY 788
            LKLF+ +      DL  S+Y LV+ WLC KG V Q++++FDEM KRG+  DN++ +SL+Y
Sbjct: 270  LKLFQALRSDRMNDLIPSTYSLVIRWLCNKGKVGQAFIVFDEMHKRGLEVDNSVHSSLIY 329

Query: 789  GLLCRRRIREAYKIVEGIEKVDICVYHALIKGLLKLRKASEATQVFREMISKGCEPIMHT 968
            GLL R R REAY I+  IE  D+ VYHA IKGLLKL++A+EATQVFREMI +GCEPIMHT
Sbjct: 330  GLLARGRRREAYNIMRRIENPDLDVYHAFIKGLLKLKRANEATQVFREMIERGCEPIMHT 389

Query: 969  YIMLLQGHLGKRGRKGPDPVVNFETIFVGGVVKLGKSLEATKYVERIMSGGVEVPRFDYN 1148
            YIMLLQGHLGKRGRKG DP+VNF++IFVGG+VK GKSLEATKYVER+M  G+EVPRFDYN
Sbjct: 390  YIMLLQGHLGKRGRKGSDPLVNFDSIFVGGLVKNGKSLEATKYVERLMKRGLEVPRFDYN 449

Query: 1149 KFLHSFSNEEGVAMFEDVGKKLRAVGLVDLADIFQRYGEKMTTRDMRR 1292
            KFLH +SNEEGV MF +VG KLR VGLVDLADIFQRYGEKMTTRD RR
Sbjct: 450  KFLHYYSNEEGVVMFREVGNKLREVGLVDLADIFQRYGEKMTTRDRRR 497



 Score =  122 bits (306), Expect(2) = e-116
 Identities = 59/93 (63%), Positives = 74/93 (79%), Gaps = 3/93 (3%)
 Frame = +2

Query: 359 YGFVYELERLNKVIETLCGEKLVFEAKYIVMKMKEFVQLNGVTYKLLIVGFCEVGDMIEA 538
           YGF Y L  LN+V+E LCG KLV EAK++VMK+ E+++ +GVTYKLLI GFC VGD+IEA
Sbjct: 175 YGFCYSLVTLNRVVEKLCGCKLVDEAKFLVMKLNEWIKADGVTYKLLIKGFCNVGDLIEA 234

Query: 539 SKFWNLMVDEGFELEVEA---MMDTFFKNNRVE 628
           SK WNLMVDEGFE E+EA   MM+  FK N+++
Sbjct: 235 SKMWNLMVDEGFEPEMEAVEEMMNVLFKTNKLD 267


>ref|XP_002322859.1| predicted protein [Populus trichocarpa] gi|222867489|gb|EEF04620.1|
            predicted protein [Populus trichocarpa]
          Length = 502

 Score =  332 bits (851), Expect(2) = e-114
 Identities = 160/219 (73%), Positives = 188/219 (85%)
 Frame = +3

Query: 648  DLGLSSYRLVVNWLCKKGMVLQSYVLFDEMIKRGIHADNAMLASLVYGLLCRRRIREAYK 827
            DL LS+YRLV++W+C+KG V+Q+ ++FDEM +RGI ADN+ L SLVYGLL R R  EA+K
Sbjct: 278  DLALSTYRLVIDWMCRKGKVVQAQMVFDEMRQRGIQADNSTLGSLVYGLLTRGRHAEAHK 337

Query: 828  IVEGIEKVDICVYHALIKGLLKLRKASEATQVFREMISKGCEPIMHTYIMLLQGHLGKRG 1007
            +VE IEK DI VYH LIKGL++ R+ASEATQVFREMI++GCEP MHTYIMLLQGHLGKRG
Sbjct: 338  VVERIEKTDISVYHGLIKGLVRSRRASEATQVFREMINRGCEPTMHTYIMLLQGHLGKRG 397

Query: 1008 RKGPDPVVNFETIFVGGVVKLGKSLEATKYVERIMSGGVEVPRFDYNKFLHSFSNEEGVA 1187
            RKGPDP+VNFE+IFVGG++K GKSLEATKYVER M G +EVPRFDYNKFLH +S+EEGV 
Sbjct: 398  RKGPDPLVNFESIFVGGLIKAGKSLEATKYVERTMKGSLEVPRFDYNKFLHYYSSEEGVV 457

Query: 1188 MFEDVGKKLRAVGLVDLADIFQRYGEKMTTRDMRRRLPE 1304
            MF++VGKKLR  G VDLADI QRYGEKM TR+ RRR  E
Sbjct: 458  MFKEVGKKLREAGFVDLADILQRYGEKMATRERRRRRSE 496



 Score =  108 bits (270), Expect(2) = e-114
 Identities = 51/93 (54%), Positives = 70/93 (75%), Gaps = 3/93 (3%)
 Frame = +2

Query: 359 YGFVYELERLNKVIETLCGEKLVFEAKYIVMKMKEFVQLNGVTYKLLIVGFCEVGDMIEA 538
           +G  Y +ERLNKV+E LC  KLV EAK++V+K+K++++ +GVTY  L+ GFC+VG++IEA
Sbjct: 170 HGCEYRVERLNKVVENLCKGKLVEEAKFVVLKLKDWIRPDGVTYGWLVKGFCDVGELIEA 229

Query: 539 SKFWNLMVDEGFELEVEA---MMDTFFKNNRVE 628
           SK WNLMVDE  E E+E    MM+T FK N  +
Sbjct: 230 SKIWNLMVDESIEPEIEVFEKMMETLFKRNEYD 262


>ref|XP_003614047.1| hypothetical protein MTR_5g044120 [Medicago truncatula]
            gi|355515382|gb|AES97005.1| hypothetical protein
            MTR_5g044120 [Medicago truncatula]
          Length = 507

 Score =  324 bits (830), Expect(2) = e-113
 Identities = 158/229 (68%), Positives = 191/229 (83%), Gaps = 5/229 (2%)
 Frame = +3

Query: 621  GLKLFRLV-----GDLGLSSYRLVVNWLCKKGMVLQSYVLFDEMIKRGIHADNAMLASLV 785
            GLKLF+ +      +LG+S+YR+V+ WLCKKGM+  ++ +FDEM +RGI  D+  L  +V
Sbjct: 261  GLKLFQTMRLKRMDELGVSTYRVVIKWLCKKGMMDNAHEVFDEMCERGIRVDSLTLGYVV 320

Query: 786  YGLLCRRRIREAYKIVEGIEKVDICVYHALIKGLLKLRKASEATQVFREMISKGCEPIMH 965
            YGLL + R+REAY+IVE I+ VDI VYH LIKGLLKLR+ASEATQVFREMI +GCEP MH
Sbjct: 321  YGLLAKHRVREAYQIVEKIDVVDISVYHGLIKGLLKLRRASEATQVFREMIKRGCEPTMH 380

Query: 966  TYIMLLQGHLGKRGRKGPDPVVNFETIFVGGVVKLGKSLEATKYVERIMSGGVEVPRFDY 1145
            TYIMLLQGHLG+RGRKG DP+VNF++IFVGG+VK+G S EA KYVER+M+ G+EVPRFDY
Sbjct: 381  TYIMLLQGHLGRRGRKGTDPLVNFDSIFVGGMVKVGHSKEAIKYVERVMNRGMEVPRFDY 440

Query: 1146 NKFLHSFSNEEGVAMFEDVGKKLRAVGLVDLADIFQRYGEKMTTRDMRR 1292
            NKFLH FSNEEG  MFE+V KKLR VGLVDLADI +RYG+KM+TRD RR
Sbjct: 441  NKFLHYFSNEEGAVMFEEVAKKLREVGLVDLADILERYGQKMSTRDRRR 489



 Score =  112 bits (280), Expect(2) = e-113
 Identities = 55/90 (61%), Positives = 70/90 (77%), Gaps = 3/90 (3%)
 Frame = +2

Query: 362 GFVYELERLNKVIETLCGEKLVFEAKYIVMKMKEFVQLNGVTYKLLIVGFCEVGDMIEAS 541
           G+ Y +ERLNKV+E +C  KLV EAK++V KMK+ ++L+GV+YK LI GFCE GD+IEAS
Sbjct: 168 GYGYSVERLNKVVEEMCKVKLVEEAKFVVFKMKDLIKLDGVSYKWLISGFCEKGDLIEAS 227

Query: 542 KFWNLMVDEGFELE---VEAMMDTFFKNNR 622
           K WNLMVDEGF  +   VE  M+TFFK N+
Sbjct: 228 KIWNLMVDEGFVPDVDVVENFMETFFKVNQ 257


>ref|XP_003517831.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At1g26500-like [Glycine max]
          Length = 494

 Score =  331 bits (849), Expect(2) = e-112
 Identities = 157/228 (68%), Positives = 190/228 (83%)
 Frame = +3

Query: 609  LRIIGLKLFRLVGDLGLSSYRLVVNWLCKKGMVLQSYVLFDEMIKRGIHADNAMLASLVY 788
            LR+     F+ + +LG S+Y LV+ WLCKKGM+ +++ +F+EM +RG+  +++ L  +VY
Sbjct: 259  LRLFETMRFKRMNELGASTYGLVIRWLCKKGMMARAHEVFEEMRERGVRVNDSTLGDVVY 318

Query: 789  GLLCRRRIREAYKIVEGIEKVDICVYHALIKGLLKLRKASEATQVFREMISKGCEPIMHT 968
            GLL RRR+REAY++ EGIE  D+CVYH  IKGLLKLR+A EATQVFREMI +GCEP MHT
Sbjct: 319  GLLTRRRVREAYRVFEGIEVPDLCVYHGFIKGLLKLRRAGEATQVFREMIRRGCEPTMHT 378

Query: 969  YIMLLQGHLGKRGRKGPDPVVNFETIFVGGVVKLGKSLEATKYVERIMSGGVEVPRFDYN 1148
            YIMLLQGHLG+RGRKG DP+VNF+TIFVGG+VK GKS EATKYVER+++ G+EVPRFDYN
Sbjct: 379  YIMLLQGHLGRRGRKGTDPLVNFDTIFVGGMVKAGKSKEATKYVERVLNRGMEVPRFDYN 438

Query: 1149 KFLHSFSNEEGVAMFEDVGKKLRAVGLVDLADIFQRYGEKMTTRDMRR 1292
            KFLH FSNEEGV MFEDVGKKLR VGLVDLADI  RYG+KM TRD RR
Sbjct: 439  KFLHYFSNEEGVHMFEDVGKKLREVGLVDLADILDRYGQKMATRDRRR 486



 Score =  103 bits (258), Expect(2) = e-112
 Identities = 50/89 (56%), Positives = 67/89 (75%), Gaps = 3/89 (3%)
 Frame = +2

Query: 362 GFVYELERLNKVIETLCGEKLVFEAKYIVMKMKEFVQLNGVTYKLLIVGFCEVGDMIEAS 541
           G  Y L  LNKV+E +C  +LV EAK++V K++E V+ +GVTYK LI+G+C+ GD++ AS
Sbjct: 165 GCEYNLGTLNKVVEAMCKSRLVDEAKFVVFKLRECVRPDGVTYKNLIIGYCDKGDLVGAS 224

Query: 542 KFWNLMVDEGFELEVEA---MMDTFFKNN 619
           K WNLM DEGFE +V+A   MM+TFFK N
Sbjct: 225 KVWNLMEDEGFEADVDAVEKMMETFFKVN 253


>ref|XP_002274259.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At1g26500-like [Vitis vinifera]
          Length = 525

 Score =  334 bits (857), Expect(2) = e-112
 Identities = 162/234 (69%), Positives = 199/234 (85%), Gaps = 6/234 (2%)
 Frame = +3

Query: 624  LKLFRLV-----GDLGLSSYRLVVNWLCKKGMVLQSYVLFDEMIKRGIHADNAMLASLVY 788
            +KLF+ V      +L LS+Y LV++W+CK+G V Q+Y++F+EM+KRGI  DN  ++SL+Y
Sbjct: 264  MKLFQAVRTTRFDELVLSTYSLVIDWMCKRGKVSQAYMVFEEMLKRGIQPDNKTMSSLIY 323

Query: 789  GLLCRRRIREAYKIVEGIEKVDICVYHALIKGLLKLRKASEATQVFREMISKGCEPIMHT 968
            GLL + R+REA KI EGIE+ DI VYH +IKGLL+LRKA EATQVFREMI +GCEP MHT
Sbjct: 324  GLLAKGRVREANKITEGIERPDIAVYHGVIKGLLRLRKAGEATQVFREMIRRGCEPTMHT 383

Query: 969  YIMLLQGHLGKRGRKGPDPVVNFETIFVGGVVKLGKSLEATKYVERIMSGGVEVPRFDYN 1148
            YIMLLQGHLGK+GRKGP P+VNF++IFVGG++K+GKSL+A+KYVER+M GG+EVPRFDYN
Sbjct: 384  YIMLLQGHLGKKGRKGPHPLVNFDSIFVGGLIKVGKSLDASKYVERMMDGGMEVPRFDYN 443

Query: 1149 KFLHSFSNEEGVAMFEDVGKKLRAVGLVDLADIFQRYGEKMTTRDMRR-RLPEP 1307
            +FLH +SNEEGV MFE+VGKKLR VGLVDLADIF RYGEKM TRD RR R+ EP
Sbjct: 444  RFLHCYSNEEGVFMFEEVGKKLREVGLVDLADIFLRYGEKMATRDRRRNRVAEP 497



 Score = 99.8 bits (247), Expect(2) = e-112
 Identities = 51/89 (57%), Positives = 62/89 (69%), Gaps = 3/89 (3%)
 Frame = +2

Query: 371 YELERLNKVIETLCGEKLVFEAKYIVMKMKEFVQLNGVTYKLLIVGFCEVGDMIEASKFW 550
           Y LE LNKV+E LC  KL  EAK IV+K+K ++  +GVTY  LI GFCEVGD+IEA+  W
Sbjct: 173 YSLETLNKVVEVLCRSKLAVEAKEIVLKLKTWIPPSGVTYGYLIKGFCEVGDLIEAANVW 232

Query: 551 NLMVDEGFEL---EVEAMMDTFFKNNRVE 628
           +LMVDEGF      VE MM+T F  NR +
Sbjct: 233 DLMVDEGFRPGIDAVEKMMETLFNINRFD 261