BLASTX nr result
ID: Coptis24_contig00003104
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00003104
(1641 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera] 228 5e-57
ref|XP_002316602.1| predicted protein [Populus trichocarpa] gi|2... 182 3e-43
ref|XP_003607639.1| F-box/LRR-repeat protein [Medicago truncatul... 169 2e-39
ref|XP_003545870.1| PREDICTED: F-box/LRR-repeat protein At3g1471... 164 8e-38
emb|CBI32913.3| unnamed protein product [Vitis vinifera] 155 4e-35
>emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]
Length = 607
Score = 228 bits (580), Expect = 5e-57
Identities = 164/458 (35%), Positives = 245/458 (53%), Gaps = 22/458 (4%)
Frame = +2
Query: 161 DETRDRLSSLPGKILHHILSFLPTKYAVGTSILSTSWRYNWTSVPILDICDHLLF--SNE 334
+E+RD +S+LP ++L HILSFLPTK+AVGTSILS WRY W SVPILD D L S
Sbjct: 6 EESRDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTL 65
Query: 335 RTSGDPIVMRNFMNFVDRVLLLPEVD-LQKFCLTCEGDLDASRVNAWISTVIRRKVRELI 511
+ I+M F NFVD VL EV ++KF L D + V +WI + R+V+EL
Sbjct: 66 VELEERIIM--FQNFVDGVLRHSEVSCIKKFRLGYR-DNNLDSVYSWICIALERRVQELD 122
Query: 512 IEIMLEDSLAFPRCLFSCESLKILKINFSDGLTLPTSISFPRLKVLHFHSIGFCCDESVQ 691
+ ++++ + P F C++L ++K++ + L +PT++ P LK LH S+ + D+S+Q
Sbjct: 123 LHLLIDWRVELPPMFFICKTLVVVKLSCALFLDIPTTVWLPSLKALHLKSVEYSDDDSIQ 182
Query: 692 QVSFNCALLEEFQMEECAWLKIKTINIFAPLLKRLEINDHSTYMVAAY-----DCVMQIH 856
++ C +LEE +E +N+ P LK L I + Y D + +
Sbjct: 183 KLLSGCPVLEELVIEREERDNQWVVNVSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVD 242
Query: 857 AENLISLVLNSGLSCMYFLHNLPSIVNASVDL--------DSPEDYGPS----VINLLRE 1000
A NL L + LS YF+ +LPS+V A +D+ +SP + G S + LL
Sbjct: 243 APNLEYLSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGPIYELLGR 302
Query: 1001 ICNVKDLTLSRDLIEALFRPELSTNMPKFSNVTRLRVTGINPFNGSHLISLLCDMPDIES 1180
I NVK L+L+ +++L +P F N+TRL I FN L + L P++E+
Sbjct: 303 ISNVKCLSLTGVTLDSLSGTIGDYKLPTFHNMTRLEFLFIGGFNWDFLPNFLHSSPNLEA 362
Query: 1181 LNIE--LQNCTLGENFLTLATFPQHFLSHLKSVELSSLYRYDNELCIIKFLLQNARVLEK 1354
L IE N + E +L P + HLK +E+ + D EL +++LL+NA VL++
Sbjct: 363 LVIETGYTNELIPEGWLMPLQVPACLVLHLKEIEIRRIVGEDYELEAVEYLLKNAEVLQQ 422
Query: 1355 MTINCVAKLSADPSEQLEVCKKLLTLPRFSARSVIAFS 1468
MTI+C ++ VCKKLL LPR S + S
Sbjct: 423 MTIDCHESYM---DQEFCVCKKLLGLPRGSRSCFVVSS 457
>ref|XP_002316602.1| predicted protein [Populus trichocarpa] gi|222859667|gb|EEE97214.1|
predicted protein [Populus trichocarpa]
Length = 460
Score = 182 bits (461), Expect = 3e-43
Identities = 157/483 (32%), Positives = 236/483 (48%), Gaps = 24/483 (4%)
Frame = +2
Query: 89 MDASTSTPISKRQKLLEGHNSGASDETRDRLSSLPGKILHHILSFLPTKYAVGTSILSTS 268
M A + T +KR+KL + + +++ + +LP +L HILSFL T+ AV TSILS
Sbjct: 1 MKAKSLTRKTKRKKLKAEKETDSGEKS---IGNLPDALLEHILSFLSTEAAVRTSILSKK 57
Query: 269 WRYNWTSVPILDICDHLLFSNERTSGDPIVMRNFMNFVDRVLLLP-EVDLQKFCLTCEGD 445
W + W S L L S +R + FM+FVDRVL L ++ +F L+CE
Sbjct: 58 WLHLWKSTTNLTFFG--LKSPKR--------KLFMDFVDRVLALRGPSNIVQFYLSCEVK 107
Query: 446 LDASRVNAWISTVIRRKVRELIIEIM-LEDSLAFPRCLFSCESLKILKINFSDGLTLPTS 622
D SRV WIS + R V++L +E+ E S P CLF+CE+L L+IN L LP+S
Sbjct: 108 DDPSRVGTWISAAVNRNVKDLYLELRDFEASFVLPHCLFNCETLTELEINMPYILKLPSS 167
Query: 623 ISFPRLKVLHFHSIGFCCDESVQQVSFNCALLEEFQMEECAWLKIKTINIFAPLLKRLEI 802
IS LK+L+ + + F D S QQ+ F+ L E ++ EC W+ + ++I AP L+ L+I
Sbjct: 168 ISLSCLKILNLYEVIFTDDHSTQQL-FSLPNLVELEIHECNWMNLVAVSISAPKLQSLDI 226
Query: 803 NDHSTYMVAAY-DCVMQIHAENLISLVLNSGLSCMYFLHNLPSIVNASVDL----DSPED 967
++ A+ C ++I +L + LS Y L+ S+V + + D P
Sbjct: 227 HEPCQSSPASLGGCHVRIFGTHLADFTIIGTLSNDYCLYE-SSVVETCISIFSAADKPRQ 285
Query: 968 YGPSVINLLREICNVKDLTLSRDLIEAL-FRPELSTNMPKFSNVTRLRVTGINP------ 1126
LL I + + L L+ ++++ L PEL +F N+T L
Sbjct: 286 TAYRASKLLEGISSAQSLCLTTNVVDVLDDAPELLAFPLEFRNLTSLLFESEESNLHSDG 345
Query: 1127 -----FNGSHLISLL---CDMPDIESLNIELQNCTLGENFLTLATFPQHFLSHLKSVELS 1282
+N HLI+L MP + S NC TL P FLS LK +++
Sbjct: 346 FWHIIYNSPHLIALQFYGVSMPKVPS------NC---REDWTLDPSPPCFLSCLKFIQVG 396
Query: 1283 SLYRYDNELCIIKFLLQNARVLEKMTI--NCVAKLSADPSEQLEVCKKLLTLPRFSARSV 1456
+ EL + FLL+NA LE M I + A+ + E+ ++LL LPR+S
Sbjct: 397 RFGGDEKELDAVGFLLKNATALESMDIIYSGSARRDQGVDKTNEIHQQLLALPRWSEIGN 456
Query: 1457 IAF 1465
I F
Sbjct: 457 INF 459
>ref|XP_003607639.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355508694|gb|AES89836.1| F-box/LRR-repeat protein
[Medicago truncatula]
Length = 467
Score = 169 bits (428), Expect = 2e-39
Identities = 137/443 (30%), Positives = 222/443 (50%), Gaps = 20/443 (4%)
Frame = +2
Query: 164 ETRDRLSSLPGKILHHILSFLPTKYAVGTSILSTSWRYNWTSVPILDICDHLLFSNERTS 343
+ +D +S LP IL++ILS L T+ AV TSIL+T WRY WT +P+ D D S +R S
Sbjct: 20 DMKDMISDLPEGILYYILSRLSTEEAVRTSILATKWRYLWTQLPVFDFRDS---SPKRNS 76
Query: 344 GDPIVMRNFMNFVDRVLLLPEVDLQKFCLTCEGDLDASRVNAWISTVIRRKVRELIIEIM 523
P + ++ VD++L + F +DA +V++ +S+ + V +L + +
Sbjct: 77 KSPDCL---VDLVDQLLHKSNRIKKLFIELPVTIVDAGKVSSMLSSALMHDVHDLTLNLE 133
Query: 524 LEDS-LAFPRCLFSCESLKILKINFSDGLTLPTSISFPRLKVLHFHSIGFCCDESVQQVS 700
E+S P + SL L I F ++P I FP LK+L F + F ++S Q++
Sbjct: 134 SENSRFVLPNSFSASRSLTKLDIVFGFLDSVPDGICFPSLKILSFAHVTFTNEKSAQRLF 193
Query: 701 FNCALLEEFQMEECAWLKIKTINIFAPLLKRLEINDHSTYMVAAYDCVMQIHAENLISLV 880
C +L++ E+C W+ I I++ P LK+L+I S+ + C+ +I A NL+SL
Sbjct: 194 SGCPVLQDLSFEKCYWVNI-NISVAIPTLKKLDIFFRSS-SLDRNSCMFKIDAVNLLSLS 251
Query: 881 LNSGLSCMYFLHNLPSIVNASVDL------DSPEDYGPSVINLLREICNVKDLTLSRDLI 1042
S + FL N SIV+A++DL ++ I L + +V+ L LS I
Sbjct: 252 YKSNPTINCFLVNSTSIVDANIDLGFFCVQNNELHVAVFAIELFSRLGSVESLRLSDQTI 311
Query: 1043 EALFRPELSTN-MPKFSNVTRLRVTGINPFNGSHLISLLCDMPDIESLNI---ELQNC-- 1204
+ L + + + +P F N+TRL V +P + L +L P +E L+I L +C
Sbjct: 312 QCLNYAKSALHLLPSFKNLTRLEVHFDDP-SCEVLADILRKSPKLEFLHIYGVHLVSCSR 370
Query: 1205 -------TLGENFLTLATFPQHFLSHLKSVELSSLYRYDNELCIIKFLLQNARVLEKMTI 1363
+L T + P F S LKS ++S + E+ ++KFLL+N +L +M I
Sbjct: 371 FSSGSYLSLDSEDWTSDSLPCCFKSSLKSCDISDFRGDEAEIRLVKFLLENVTLLREMNI 430
Query: 1364 NCVAKLSADPSEQLEVCKKLLTL 1432
C LS + +V +L L
Sbjct: 431 YCTGYLSKKSKKLADVRNQLQAL 453
>ref|XP_003545870.1| PREDICTED: F-box/LRR-repeat protein At3g14710-like [Glycine max]
Length = 453
Score = 164 bits (414), Expect = 8e-38
Identities = 145/445 (32%), Positives = 216/445 (48%), Gaps = 16/445 (3%)
Frame = +2
Query: 179 LSSLPGKILHHILSFLPTKYAVGTSILSTSWRYNWTSVPILDICDHLLFSNERTSGDPIV 358
+S L IL ILSFLPT AV TS+LS W + W S+ L D L G +
Sbjct: 23 ISKLHESILGKILSFLPTTDAVHTSVLSKGWIHVWKSITGLQFNDAL-----HPLGKKMQ 77
Query: 359 MRNFMNFVDRVLL-LPEVDLQKF--CLTCEGDLDASRVNAWISTVIRRKVRELIIEIMLE 529
+F+ FV +V+L L +Q F CLTC D++ V+AWIS++++R V+ L I
Sbjct: 78 KEHFVCFVKKVILHLANSSIQSFSLCLTCY-HYDSTLVSAWISSILQRGVQNL--HIQYA 134
Query: 530 DSLAFPRC-LFSCESLKILKINFSDGLTLPTSISFPRLKVLHFHSIGFCCDES--VQQVS 700
D + FP C LFSC SL L + +++P S P L+ L I + S + +
Sbjct: 135 DEILFPSCSLFSCNSLVQLVLQMKCTISVPIFSSLPNLQNLSISGIRLVSESSNYSEDLI 194
Query: 701 FNCALLEEFQMEECAWLKIKTINIFAPLLKRLEINDHSTYMVAAYDCVMQIHAENLISLV 880
N +L+ + C WL + I I APLL+R I ++ ++ ++I A NL
Sbjct: 195 LNFPVLKVLEARGCEWLTKQNIGIKAPLLERFSIAIWNSLSNKSHKSAIKIFAPNLADFS 254
Query: 881 LNSGLSCMYFLHNLPSIVNASVDLDSPED-------YGPSVINLLREICNVKDLTLSRDL 1039
L L N SI +ASV + + ED G V LL +I VK L L
Sbjct: 255 YGGDLEQEIILLNSASIHSASVVIVADEDKMTNVGKLGFQVHKLLAQIREVKQLKLLFYK 314
Query: 1040 IEALFRPELSTNMPKFSNVTRLRVTGINPFNGSHLISLLCDMPDIESLNIELQNCTLGEN 1219
+ + ++ T++P FS ++ L+ +N G L+++L + P + SL LQN N
Sbjct: 315 V-LMHARDIFTHLPAFSRLSYLQ---LNEVTGEALLNILNNCPILSSL--VLQNGVSESN 368
Query: 1220 ---FLTLATFPQHFLSHLKSVELSSLYRYDNELCIIKFLLQNARVLEKMTINCVAKLSAD 1390
LT A+ PQ FLS LK + ++EL + KF+L NA VLE+M I L
Sbjct: 369 KDHVLTSASVPQCFLSSLKVFQFKEFNVREHELLLAKFVLANAAVLEQMIICTAFWLRYS 428
Query: 1391 PSEQLEVCKKLLTLPRFSARSVIAF 1465
+ +V ++L+ P+ S +I F
Sbjct: 429 EIDVEKVKDQILSFPKCSNLVMIQF 453
>emb|CBI32913.3| unnamed protein product [Vitis vinifera]
Length = 348
Score = 155 bits (391), Expect = 4e-35
Identities = 127/365 (34%), Positives = 185/365 (50%), Gaps = 21/365 (5%)
Frame = +2
Query: 161 DETRDRLSSLPGKILHHILSFLPTKYAVGTSILSTSWRYNWTSVPILDICDHLLF--SNE 334
+E+RD +S+LP ++L HILSFLPTK+AVGTSILS WRY W SVPILD D L S
Sbjct: 6 EESRDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTL 65
Query: 335 RTSGDPIVMRNFMNFVDRVLLLPEVD-LQKFCLTCEGDLDASRVNAWISTVIRRKVRELI 511
+ I+M F NFVD VL EV ++KF L G D + ++ W
Sbjct: 66 VELEERIIM--FQNFVDGVLRHSEVSCIKKFRL---GYRD-NNLDNW------------- 106
Query: 512 IEIMLEDSLAFPRCLFSCESLKILKINFSDGLTLPTSISFPRLKVLHFHSIGFCCDESVQ 691
+ P F C++L ++K++ + L +PT++ P LK LH S+ + D+S+Q
Sbjct: 107 -------GVELPPMFFICKTLVVVKLSCALFLDIPTTVWLPSLKALHLKSVEYSDDDSIQ 159
Query: 692 QVSFNCALLEEFQMEECAWLKIKTINIFAPLLKRLEINDHSTYMVAAY-----DCVMQIH 856
++ C +LEE +E +N+ P LK L I + Y D + +
Sbjct: 160 KLLSGCPVLEELVIEREERDNQWVVNVSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVD 219
Query: 857 AENLISLVLNSGLSCMYFLHNLPSIVNASVDL--------DSPEDYGPS----VINLLRE 1000
A NL L + LS YF+ +LPS+V A +D+ +SP + G S + LL
Sbjct: 220 APNLEYLSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGPIYELLGR 279
Query: 1001 ICNVKDLTLSRDLIEALFR-PELSTNMPKFSNVTRLRVTGINPFNGSHLISLLCDMPDIE 1177
I NVK L+L+ ++ F P + +P F N+T L I FN L + L P++E
Sbjct: 280 ISNVKCLSLTGVTLDVSFLCPPI---LPTFHNMTCLEFLFIGGFNWDFLPNFLHSSPNLE 336
Query: 1178 SLNIE 1192
+L IE
Sbjct: 337 ALVIE 341