BLASTX nr result
ID: Coptis24_contig00003042
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00003042
(228 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EDM13556.1| rCG21222, isoform CRA_b [Rattus norvegicus] 133 2e-29
ref|XP_004173717.1| PREDICTED: polyubiquitin-like, partial [Cucu... 132 2e-29
emb|CCO66297.1| polyubiquitin [Bathycoccus prasinos] 132 2e-29
ref|XP_003608276.1| Ubiquitin [Medicago truncatula] gi|355509331... 132 2e-29
gb|AAC35858.1| polyubiquitin [Capsicum chinense] 132 2e-29
>gb|EDM13556.1| rCG21222, isoform CRA_b [Rattus norvegicus]
Length = 179
Score = 133 bits (334), Expect = 2e-29
Identities = 71/82 (86%), Positives = 74/82 (90%), Gaps = 7/82 (8%)
Frame = -2
Query: 227 RSRTRRE-------RLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK 69
RSRTRRE RLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 5 RSRTRREGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGK 64
Query: 68 TITLEVESSDTIDNVKAKIQDK 3
TITLEVE SDTI+NVKAKIQDK
Sbjct: 65 TITLEVEPSDTIENVKAKIQDK 86
Score = 105 bits (261), Expect = 5e-21
Identities = 53/64 (82%), Positives = 58/64 (90%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 33
++RLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VE S
Sbjct: 93 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSVNT 152
Query: 32 DNVK 21
VK
Sbjct: 153 KKVK 156
>ref|XP_004173717.1| PREDICTED: polyubiquitin-like, partial [Cucumis sativus]
Length = 126
Score = 132 bits (333), Expect = 2e-29
Identities = 67/70 (95%), Positives = 70/70 (100%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 33
++RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI
Sbjct: 13 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 72
Query: 32 DNVKAKIQDK 3
DNVKAKIQDK
Sbjct: 73 DNVKAKIQDK 82
Score = 71.6 bits (174), Expect = 6e-11
Identities = 34/37 (91%), Positives = 37/37 (100%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 102
++RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct: 89 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 125
>emb|CCO66297.1| polyubiquitin [Bathycoccus prasinos]
Length = 359
Score = 132 bits (333), Expect = 2e-29
Identities = 67/70 (95%), Positives = 70/70 (100%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 33
++RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI
Sbjct: 91 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 150
Query: 32 DNVKAKIQDK 3
DNVKAKIQDK
Sbjct: 151 DNVKAKIQDK 160
Score = 132 bits (333), Expect = 2e-29
Identities = 67/70 (95%), Positives = 70/70 (100%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 33
++RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI
Sbjct: 167 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 226
Query: 32 DNVKAKIQDK 3
DNVKAKIQDK
Sbjct: 227 DNVKAKIQDK 236
Score = 132 bits (333), Expect = 2e-29
Identities = 67/70 (95%), Positives = 70/70 (100%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 33
++RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI
Sbjct: 243 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 302
Query: 32 DNVKAKIQDK 3
DNVKAKIQDK
Sbjct: 303 DNVKAKIQDK 312
Score = 71.6 bits (174), Expect = 6e-11
Identities = 34/37 (91%), Positives = 37/37 (100%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 102
++RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct: 319 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 355
Score = 65.9 bits (159), Expect = 3e-09
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = -2
Query: 101 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 3
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33
>ref|XP_003608276.1| Ubiquitin [Medicago truncatula] gi|355509331|gb|AES90473.1|
Ubiquitin [Medicago truncatula]
Length = 533
Score = 132 bits (333), Expect = 2e-29
Identities = 67/70 (95%), Positives = 70/70 (100%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 33
++RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI
Sbjct: 40 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99
Query: 32 DNVKAKIQDK 3
DNVKAKIQDK
Sbjct: 100 DNVKAKIQDK 109
Score = 132 bits (333), Expect = 2e-29
Identities = 67/70 (95%), Positives = 70/70 (100%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 33
++RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI
Sbjct: 116 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 175
Query: 32 DNVKAKIQDK 3
DNVKAKIQDK
Sbjct: 176 DNVKAKIQDK 185
Score = 132 bits (333), Expect = 2e-29
Identities = 67/70 (95%), Positives = 70/70 (100%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 33
++RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI
Sbjct: 192 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 251
Query: 32 DNVKAKIQDK 3
DNVKAKIQDK
Sbjct: 252 DNVKAKIQDK 261
Score = 132 bits (333), Expect = 2e-29
Identities = 67/70 (95%), Positives = 70/70 (100%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 33
++RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI
Sbjct: 420 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 479
Query: 32 DNVKAKIQDK 3
DNVKAKIQDK
Sbjct: 480 DNVKAKIQDK 489
Score = 131 bits (330), Expect = 5e-29
Identities = 66/70 (94%), Positives = 70/70 (100%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 33
++RLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI
Sbjct: 344 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 403
Query: 32 DNVKAKIQDK 3
DNVKAKIQDK
Sbjct: 404 DNVKAKIQDK 413
Score = 130 bits (326), Expect = 1e-28
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 33
++RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI
Sbjct: 268 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 327
Query: 32 DNVKAKIQDK 3
DNVKAKI DK
Sbjct: 328 DNVKAKILDK 337
Score = 71.6 bits (174), Expect = 6e-11
Identities = 34/37 (91%), Positives = 37/37 (100%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 102
++RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct: 496 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532
Score = 65.9 bits (159), Expect = 3e-09
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = -2
Query: 101 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 3
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33
>gb|AAC35858.1| polyubiquitin [Capsicum chinense]
Length = 265
Score = 132 bits (333), Expect = 2e-29
Identities = 67/70 (95%), Positives = 70/70 (100%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 33
++RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI
Sbjct: 76 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 135
Query: 32 DNVKAKIQDK 3
DNVKAKIQDK
Sbjct: 136 DNVKAKIQDK 145
Score = 132 bits (332), Expect = 3e-29
Identities = 67/69 (97%), Positives = 69/69 (100%)
Frame = -2
Query: 209 ERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTID 30
+RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTID
Sbjct: 1 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTID 60
Query: 29 NVKAKIQDK 3
NVKAKIQDK
Sbjct: 61 NVKAKIQDK 69
Score = 131 bits (329), Expect = 7e-29
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 33
++RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI
Sbjct: 152 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 211
Query: 32 DNVKAKIQDK 3
DNVK KIQDK
Sbjct: 212 DNVKTKIQDK 221
Score = 71.6 bits (174), Expect = 6e-11
Identities = 34/37 (91%), Positives = 37/37 (100%)
Frame = -2
Query: 212 RERLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 102
++RLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct: 228 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 264