BLASTX nr result
ID: Coptis24_contig00003028
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00003028
(593 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003534199.1| PREDICTED: protein CbxX, chromosomal-like [G... 50 3e-24
ref|XP_003528921.1| PREDICTED: protein CbxX, chromosomal-like [G... 50 6e-24
gb|ACU19919.1| unknown [Glycine max] 50 6e-24
ref|NP_001046505.1| Os02g0266300 [Oryza sativa Japonica Group] g... 52 8e-22
gb|EEE56702.1| hypothetical protein OsJ_06177 [Oryza sativa Japo... 52 8e-22
>ref|XP_003534199.1| PREDICTED: protein CbxX, chromosomal-like [Glycine max]
Length = 484
Score = 49.7 bits (117), Expect(4) = 3e-24
Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 16/75 (21%)
Frame = +2
Query: 59 ILPTDKVTKLQNTNI------------EEKIKEAEGGVLFVD----LLSMSEGRRLEYWL 190
ILPTDKVT++Q T++ KIKEAEGG+LFVD L+ M + +Y L
Sbjct: 277 ILPTDKVTEVQRTDLVGEFVGHTGPKTRRKIKEAEGGILFVDEAYRLIPMQKSDDKDYGL 336
Query: 191 ERIVRECMSAIDSEK 235
E + E MS +DS K
Sbjct: 337 EAL-EEIMSVMDSGK 350
Score = 48.9 bits (115), Expect(4) = 3e-24
Identities = 25/44 (56%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Frame = +2
Query: 464 TEKQREELNGG-VDQILANARQNLDFRLNLYTANVEELCTISVL 592
TEKQR+E NGG VD +L NAR+NLD RL+ + EEL TI+++
Sbjct: 430 TEKQRQETNGGLVDTMLVNARENLDLRLSFDCMDTEELLTITLV 473
Score = 43.5 bits (101), Expect(4) = 3e-24
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = +1
Query: 352 AQTLHLEMNTQVKDSPLYGFKLDPLCSVDAITKLIESNRKTERRIE 489
AQ LH++MN +DS LYGFKL CS+ ++ LIE ++R E
Sbjct: 391 AQILHIKMNNLAEDSLLYGFKLHTDCSIKSLAALIERETTEKQRQE 436
Score = 34.7 bits (78), Expect(4) = 3e-24
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 255 GISEEMKHLISSNKE*SRRATKFFVFSDHNT 347
G S+ MK +I+SN+ RR TKFF F+D N+
Sbjct: 357 GYSKPMKRVITSNEGFCRRVTKFFQFNDFNS 387
>ref|XP_003528921.1| PREDICTED: protein CbxX, chromosomal-like [Glycine max]
Length = 480
Score = 49.7 bits (117), Expect(4) = 6e-24
Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 16/75 (21%)
Frame = +2
Query: 59 ILPTDKVTKLQNTNI------------EEKIKEAEGGVLFVD----LLSMSEGRRLEYWL 190
ILPTDKVT++Q T++ KIKEAEGG+LFVD L+ M + +Y L
Sbjct: 273 ILPTDKVTEVQRTDLVGEFVGHTGPKTRRKIKEAEGGILFVDEAYRLIPMQKSDDKDYGL 332
Query: 191 ERIVRECMSAIDSEK 235
E + E MS +DS K
Sbjct: 333 EAL-EEIMSVMDSGK 346
Score = 48.5 bits (114), Expect(4) = 6e-24
Identities = 25/44 (56%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Frame = +2
Query: 464 TEKQREELNGG-VDQILANARQNLDFRLNLYTANVEELCTISVL 592
TEKQR+E NGG VD +L NAR+NLD RL+ + EEL TI+++
Sbjct: 426 TEKQRKETNGGLVDTMLVNARENLDLRLSFDCMDTEELLTITLV 469
Score = 43.5 bits (101), Expect(4) = 6e-24
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +1
Query: 352 AQTLHLEMNTQVKDSPLYGFKLDPLCSVDAITKLIESNRKTERRIE 489
AQ LH++MN +DS LYGF L P C + A+ LIE ++R E
Sbjct: 387 AQILHIKMNNLAEDSLLYGFMLHPDCCIKALAALIERETTEKQRKE 432
Score = 34.3 bits (77), Expect(4) = 6e-24
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +3
Query: 255 GISEEMKHLISSNKE*SRRATKFFVFSDHNT 347
G E MK +I+SN+ RR TKFF F+D N+
Sbjct: 353 GYCEPMKRVIASNEGFCRRVTKFFQFNDFNS 383
>gb|ACU19919.1| unknown [Glycine max]
Length = 255
Score = 49.7 bits (117), Expect(4) = 6e-24
Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 16/75 (21%)
Frame = +2
Query: 59 ILPTDKVTKLQNTNI------------EEKIKEAEGGVLFVD----LLSMSEGRRLEYWL 190
ILPTDKVT++Q T++ KIKEAEGG+LFVD L+ M + +Y L
Sbjct: 48 ILPTDKVTEVQRTDLVGEFVGHTGPKTRRKIKEAEGGILFVDEAYRLIPMQKSDDKDYGL 107
Query: 191 ERIVRECMSAIDSEK 235
E + E MS +DS K
Sbjct: 108 EAL-EEIMSVMDSGK 121
Score = 49.3 bits (116), Expect(4) = 6e-24
Identities = 25/44 (56%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Frame = +2
Query: 464 TEKQREELNGG-VDQILANARQNLDFRLNLYTANVEELCTISVL 592
TEKQR+E NGG VD +L NAR+NLD RL+ + EEL TI+++
Sbjct: 201 TEKQRQETNGGLVDTMLVNARENLDLRLSFDCVDTEELLTITLV 244
Score = 42.4 bits (98), Expect(4) = 6e-24
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +1
Query: 352 AQTLHLEMNTQVKDSPLYGFKLDPLCSVDAITKLIESNRKTERRIE 489
AQ LH +MN +DS LYGFKL CS+ ++ LIE ++R E
Sbjct: 162 AQILHTKMNNLAEDSLLYGFKLHTDCSIKSLAALIERETTEKQRQE 207
Score = 34.7 bits (78), Expect(4) = 6e-24
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 255 GISEEMKHLISSNKE*SRRATKFFVFSDHNT 347
G S+ MK +I+SN+ RR TKFF F+D N+
Sbjct: 128 GYSKPMKRVITSNEGFCRRVTKFFQFNDFNS 158
>ref|NP_001046505.1| Os02g0266300 [Oryza sativa Japonica Group]
gi|50251964|dbj|BAD27899.1| putative CbxX protein [Oryza
sativa Japonica Group] gi|113536036|dbj|BAF08419.1|
Os02g0266300 [Oryza sativa Japonica Group]
gi|215740885|dbj|BAG97041.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 485
Score = 51.6 bits (122), Expect(4) = 8e-22
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +1
Query: 337 TTTLQAQTLHLEMNTQVKDSPLYGFKLDPLCSVDAITKLIESNRKTERR 483
TTT A+ LHL+MN + S LYGFKLDP CS++ + +LI +RR
Sbjct: 382 TTTELAEILHLKMNNPTESSLLYGFKLDPSCSIEVVGELIARETTEQRR 430
Score = 44.3 bits (103), Expect(4) = 8e-22
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 16/75 (21%)
Frame = +2
Query: 59 ILPTDKVTKLQNTNI------------EEKIKEAEGGVLFVD----LLSMSEGRRLEYWL 190
+LPTDKVT++Q T++ KI++AEGG+LFVD L+ M + +Y +
Sbjct: 273 VLPTDKVTEVQRTDLVGEFVGHTGPKTRRKIQDAEGGILFVDEAYRLIPMQKSDDKDYGV 332
Query: 191 ERIVRECMSAIDSEK 235
E + E MS +D+ K
Sbjct: 333 EAL-EEIMSVMDNGK 346
Score = 40.0 bits (92), Expect(4) = 8e-22
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +2
Query: 464 TEKQREELNGG-VDQILANARQNLDFRLNLYTANVEELCTISV 589
TE++R+++NGG VD +L NAR+NLD RL+ + + TI++
Sbjct: 426 TEQRRKQMNGGLVDTLLINARENLDLRLDFNCDDANTMITITL 468
Score = 32.7 bits (73), Expect(4) = 8e-22
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +3
Query: 255 GISEEMKHLISSNKE*SRRATKFFVFSDHNT 347
G E MK +I+SN RR TKFF F D T
Sbjct: 353 GYCEPMKRVIASNDGFCRRVTKFFYFDDFTT 383
>gb|EEE56702.1| hypothetical protein OsJ_06177 [Oryza sativa Japonica Group]
Length = 469
Score = 51.6 bits (122), Expect(4) = 8e-22
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +1
Query: 337 TTTLQAQTLHLEMNTQVKDSPLYGFKLDPLCSVDAITKLIESNRKTERR 483
TTT A+ LHL+MN + S LYGFKLDP CS++ + +LI +RR
Sbjct: 366 TTTELAEILHLKMNNPTESSLLYGFKLDPSCSIEVVGELIARETTEQRR 414
Score = 44.3 bits (103), Expect(4) = 8e-22
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 16/75 (21%)
Frame = +2
Query: 59 ILPTDKVTKLQNTNI------------EEKIKEAEGGVLFVD----LLSMSEGRRLEYWL 190
+LPTDKVT++Q T++ KI++AEGG+LFVD L+ M + +Y +
Sbjct: 257 VLPTDKVTEVQRTDLVGEFVGHTGPKTRRKIQDAEGGILFVDEAYRLIPMQKSDDKDYGV 316
Query: 191 ERIVRECMSAIDSEK 235
E + E MS +D+ K
Sbjct: 317 EAL-EEIMSVMDNGK 330
Score = 40.0 bits (92), Expect(4) = 8e-22
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +2
Query: 464 TEKQREELNGG-VDQILANARQNLDFRLNLYTANVEELCTISV 589
TE++R+++NGG VD +L NAR+NLD RL+ + + TI++
Sbjct: 410 TEQRRKQMNGGLVDTLLINARENLDLRLDFNCDDANTMITITL 452
Score = 32.7 bits (73), Expect(4) = 8e-22
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +3
Query: 255 GISEEMKHLISSNKE*SRRATKFFVFSDHNT 347
G E MK +I+SN RR TKFF F D T
Sbjct: 337 GYCEPMKRVIASNDGFCRRVTKFFYFDDFTT 367