BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003021
         (693 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17575.3| unnamed protein product [Vitis vinifera]              168   8e-40
ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containi...   168   8e-40
ref|XP_002525094.1| pentatricopeptide repeat-containing protein,...   146   3e-33
ref|XP_003631109.1| Pentatricopeptide repeat-containing protein ...   146   4e-33
ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containi...   142   8e-32

>emb|CBI17575.3| unnamed protein product [Vitis vinifera]
          Length = 656

 Score =  168 bits (426), Expect = 8e-40
 Identities = 86/174 (49%), Positives = 119/174 (68%)
 Frame = -1

Query: 693  AVSAYNYGIKMGICIERQACLSLIGFMIRSNLFSELVEIVENMVGSGVSLGTYLLSLVIY 514
            A+ A+ Y +KMGI IER A L+L+G  IR+N F ++ +IVE MV +G+SLG YL +L+IY
Sbjct: 481  ALLAFEYSVKMGINIERIAYLALMGVFIRANSFPKVADIVEKMVRAGISLGMYLGALLIY 540

Query: 513  KLGSTQMPASCLRIFCSLPDDQKNTVTYTALMGAYFCSREVDKGLDIFHTMRRNGVPASP 334
            +LG  + P S  ++F  LPDDQK T  YTAL+ AYF S  VDKGL I+ TM+R  +  + 
Sbjct: 541  RLGCARRPGSAAKVFGLLPDDQKGTAAYTALISAYFSSGNVDKGLKIYKTMQRKRIHPAL 600

Query: 333  STYRLLIVGLKEAGRVYEAEKYIKEERSVQRGCFPQEAVSMEEHLCELLFSGGV 172
             TY LL+ GL++ GR  EAE Y KE++++      Q+ VSM+E +C LLFSG +
Sbjct: 601  GTYNLLLAGLEKKGRAREAEIYRKEKKTLHTHGHSQDIVSMDEKICNLLFSGNL 654


>ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Vitis vinifera]
          Length = 519

 Score =  168 bits (426), Expect = 8e-40
 Identities = 86/174 (49%), Positives = 119/174 (68%)
 Frame = -1

Query: 693 AVSAYNYGIKMGICIERQACLSLIGFMIRSNLFSELVEIVENMVGSGVSLGTYLLSLVIY 514
           A+ A+ Y +KMGI IER A L+L+G  IR+N F ++ +IVE MV +G+SLG YL +L+IY
Sbjct: 344 ALLAFEYSVKMGINIERIAYLALMGVFIRANSFPKVADIVEKMVRAGISLGMYLGALLIY 403

Query: 513 KLGSTQMPASCLRIFCSLPDDQKNTVTYTALMGAYFCSREVDKGLDIFHTMRRNGVPASP 334
           +LG  + P S  ++F  LPDDQK T  YTAL+ AYF S  VDKGL I+ TM+R  +  + 
Sbjct: 404 RLGCARRPGSAAKVFGLLPDDQKGTAAYTALISAYFSSGNVDKGLKIYKTMQRKRIHPAL 463

Query: 333 STYRLLIVGLKEAGRVYEAEKYIKEERSVQRGCFPQEAVSMEEHLCELLFSGGV 172
            TY LL+ GL++ GR  EAE Y KE++++      Q+ VSM+E +C LLFSG +
Sbjct: 464 GTYNLLLAGLEKKGRAREAEIYRKEKKTLHTHGHSQDIVSMDEKICNLLFSGNL 517


>ref|XP_002525094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535553|gb|EEF37221.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 472

 Score =  146 bits (369), Expect = 3e-33
 Identities = 75/174 (43%), Positives = 114/174 (65%)
 Frame = -1

Query: 693 AVSAYNYGIKMGICIERQACLSLIGFMIRSNLFSELVEIVENMVGSGVSLGTYLLSLVIY 514
           A+ A+ Y +++GI +ER A L+LIG MIRSN    ++EIV+  +  G SLG YL +L+I+
Sbjct: 297 ALMAFEYSMRVGIDLERTAYLALIGIMIRSNTSLWVLEIVKETIRVGHSLGLYLSALLIH 356

Query: 513 KLGSTQMPASCLRIFCSLPDDQKNTVTYTALMGAYFCSREVDKGLDIFHTMRRNGVPASP 334
           +LGS + P    +IF  LPD+QK T TYTA++G YF +    K L I+ TM++N +  S 
Sbjct: 357 RLGSARRPNCAAKIFDLLPDEQKCTATYTAMIGVYFSAGSAAKALKIYKTMKKNSINPSL 416

Query: 333 STYRLLIVGLKEAGRVYEAEKYIKEERSVQRGCFPQEAVSMEEHLCELLFSGGV 172
            TY +L+ GL+++GRV E + + KE+RS+         + MEE +C+LLF+G +
Sbjct: 417 GTYNVLLAGLEKSGRVCETDNFRKEKRSLMADGNRLSCLPMEEKICDLLFAGSL 470


>ref|XP_003631109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355525131|gb|AET05585.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 687

 Score =  146 bits (368), Expect = 4e-33
 Identities = 78/176 (44%), Positives = 112/176 (63%)
 Frame = -1

Query: 693  AVSAYNYGIKMGICIERQACLSLIGFMIRSNLFSELVEIVENMVGSGVSLGTYLLSLVIY 514
            A+ A+NY + MGI IER   LSL+G + RSN+FS+LVEIV  M  +G SLG YL SL+IY
Sbjct: 512  ALLAFNYSVTMGISIERTGYLSLVGLLNRSNMFSKLVEIVGEMTRAGHSLGIYLASLLIY 571

Query: 513  KLGSTQMPASCLRIFCSLPDDQKNTVTYTALMGAYFCSREVDKGLDIFHTMRRNGVPASP 334
            +LG  +  +  L+IF  LPD+ K   TYTAL+  YF +R V+K L+I+  M + G   + 
Sbjct: 572  RLGCARQLSIALKIFNLLPDNHKCVATYTALISIYFSARRVNKALEIYKIMCQKGNCPTS 631

Query: 333  STYRLLIVGLKEAGRVYEAEKYIKEERSVQRGCFPQEAVSMEEHLCELLFSGGVAL 166
             T+ +L+ GL+  GR  EA  + K ++++      QE +S E  +C+LLF+G V L
Sbjct: 632  GTFNILVAGLERNGRFSEAGVHRKAKKNLNSNIGSQENLSTEGRICDLLFAGDVIL 687


>ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Glycine max]
          Length = 585

 Score =  142 bits (357), Expect = 8e-32
 Identities = 80/178 (44%), Positives = 110/178 (61%), Gaps = 2/178 (1%)
 Frame = -1

Query: 693 AVSAYNYGIKMGICIERQACLSLIGFMIRSNLFSELVEIVENMVGSGVSLGTYLLSLVIY 514
           A+ A+ Y + MGI IER   LSLIG +IRSN+FS+L EIVE M  +G SLG YL SL+I+
Sbjct: 408 ALLAFKYSVTMGISIERTGYLSLIGLLIRSNMFSKLAEIVEKMTRAGHSLGIYLASLLIF 467

Query: 513 KLGSTQMPASCLRIFCSLPDDQKNTVTYTALMGAYFCSREVDKGLDIFHTMRRNGVPASP 334
           +LG  +     ++IF  LPD+ K + TYTAL+  YF  R V++ L+I+  M   G     
Sbjct: 468 RLGCARKHTLAMKIFNLLPDNHKCSATYTALISVYFSVRRVNEALEIYKIMCSKGFCPVL 527

Query: 333 STYRLLIVGLKEAGRVYEAEKY--IKEERSVQRGCFPQEAVSMEEHLCELLFSGGVAL 166
            TY +LI GL+  G+  EAE Y   K+ +S++     QE+V +E  +C LLFS  V L
Sbjct: 528 GTYDVLIAGLERNGKYAEAEHYRKAKKRKSLRANSGSQESVCIEGKICNLLFSVDVVL 585