BLASTX nr result
ID: Coptis24_contig00002284
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00002284
(594 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272896.1| PREDICTED: transcription factor TCP9-like [V... 91 4e-34
emb|CBI38834.3| unnamed protein product [Vitis vinifera] 91 4e-34
ref|XP_002282409.1| PREDICTED: transcription factor TCP9-like [V... 95 7e-32
ref|XP_002320104.1| predicted protein [Populus trichocarpa] gi|2... 80 1e-23
ref|XP_002302554.1| predicted protein [Populus trichocarpa] gi|2... 75 4e-23
>ref|XP_002272896.1| PREDICTED: transcription factor TCP9-like [Vitis vinifera]
Length = 360
Score = 90.5 bits (223), Expect(2) = 4e-34
Identities = 56/106 (52%), Positives = 59/106 (55%)
Frame = +1
Query: 1 KSDGETIRWLLEHAEXXXXXXXXXXXXXXXXMSVGGTLKIXXXXXXXXXXXXDMNKKKRK 180
KSDGETIRWLLEHAE MSVGGTLKI D NKKKRK
Sbjct: 140 KSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVGGTLKI-PTTSTATTQEPDPNKKKRK 198
Query: 181 RPVTSDFFDPINDGVSVSSGLAPIQASAVSATAYQQHQGLVPMWAL 318
RP S+F D +ND VSVSSGLAPI QGLVPMWA+
Sbjct: 199 RPANSEFVD-VNDAVSVSSGLAPIATPLAP-------QGLVPMWAI 236
Score = 80.1 bits (196), Expect(2) = 4e-34
Identities = 37/55 (67%), Positives = 44/55 (80%), Gaps = 2/55 (3%)
Frame = +3
Query: 411 VPSNAT--FWMIPPPASIPGPSNQPQLWTTFTPTVTPLVNISPRPISSFVTTMRP 569
+PSNA FWM+PP +I GPSNQPQ+WT F PT TPL+NIS RPISSFV++M P
Sbjct: 236 IPSNAVGAFWMVPPTTAIAGPSNQPQIWT-FPPTATPLINISARPISSFVSSMHP 289
>emb|CBI38834.3| unnamed protein product [Vitis vinifera]
Length = 340
Score = 90.5 bits (223), Expect(2) = 4e-34
Identities = 56/106 (52%), Positives = 59/106 (55%)
Frame = +1
Query: 1 KSDGETIRWLLEHAEXXXXXXXXXXXXXXXXMSVGGTLKIXXXXXXXXXXXXDMNKKKRK 180
KSDGETIRWLLEHAE MSVGGTLKI D NKKKRK
Sbjct: 153 KSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVGGTLKI-PTTSTATTQEPDPNKKKRK 211
Query: 181 RPVTSDFFDPINDGVSVSSGLAPIQASAVSATAYQQHQGLVPMWAL 318
RP S+F D +ND VSVSSGLAPI QGLVPMWA+
Sbjct: 212 RPANSEFVD-VNDAVSVSSGLAPIATPLAP-------QGLVPMWAI 249
Score = 80.1 bits (196), Expect(2) = 4e-34
Identities = 37/55 (67%), Positives = 44/55 (80%), Gaps = 2/55 (3%)
Frame = +3
Query: 411 VPSNAT--FWMIPPPASIPGPSNQPQLWTTFTPTVTPLVNISPRPISSFVTTMRP 569
+PSNA FWM+PP +I GPSNQPQ+WT F PT TPL+NIS RPISSFV++M P
Sbjct: 249 IPSNAVGAFWMVPPTTAIAGPSNQPQIWT-FPPTATPLINISARPISSFVSSMHP 302
>ref|XP_002282409.1| PREDICTED: transcription factor TCP9-like [Vitis vinifera]
Length = 387
Score = 95.1 bits (235), Expect(2) = 7e-32
Identities = 56/107 (52%), Positives = 66/107 (61%)
Frame = +1
Query: 1 KSDGETIRWLLEHAEXXXXXXXXXXXXXXXXMSVGGTLKIXXXXXXXXXXXXDMNKKKRK 180
KSDGET+RWLLEHAE +SVGGTLKI KKRK
Sbjct: 137 KSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVGGTLKIPTSSSSNPEGEAP---KKRK 193
Query: 181 RPVTSDFFDPINDGVSVSSGLAPIQASAVSATAYQQHQGLVPMWALG 321
RP S+F+D +NDGVSVSSGLAP+ A+AV+A A QGLVP+WA+G
Sbjct: 194 RPANSEFYD-VNDGVSVSSGLAPVGATAVAAAA---PQGLVPIWAVG 236
Score = 67.8 bits (164), Expect(2) = 7e-32
Identities = 34/59 (57%), Positives = 44/59 (74%), Gaps = 5/59 (8%)
Frame = +3
Query: 408 MVPSNA----TFWMIPPPAS-IPGPSNQPQLWTTFTPTVTPLVNISPRPISSFVTTMRP 569
M+P NA TFWMIPP A+ + GP NQPQLWT +P+V+P+ N+S RPISSFV+ +P
Sbjct: 241 MIPPNAVAAGTFWMIPPTATPVAGPPNQPQLWT-ISPSVSPVFNMSARPISSFVSATQP 298
>ref|XP_002320104.1| predicted protein [Populus trichocarpa] gi|222860877|gb|EEE98419.1|
predicted protein [Populus trichocarpa]
Length = 277
Score = 80.5 bits (197), Expect(2) = 1e-23
Identities = 51/113 (45%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Frame = +1
Query: 1 KSDGETIRWLLEHAEXXXXXXXXXXXXXXXXMSVGGTLKIXXXXXXXXXXXXDMNKKKRK 180
KSDGETIRWLLEHAE MSV GTLKI KKKRK
Sbjct: 48 KSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTTTSSSAEPDEPNAKKKRK 107
Query: 181 RPVTSDFFDPINDGVSVSSGLAPIQASAVSATAYQQH-------QGLVPMWAL 318
RP S++ D +ND VSVS+ LAPI Q QGLVPMWA+
Sbjct: 108 RPANSEYVD-VNDSVSVSASLAPITTRPRQPPQPQAQQPVAAVPQGLVPMWAI 159
Score = 54.7 bits (130), Expect(2) = 1e-23
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 4/65 (6%)
Frame = +3
Query: 411 VPSNAT----FWMIPPPASIPGPSNQPQLWTTFTPTVTPLVNISPRPISSFVTTMRPPDV 578
+PSN F+M+P S+PG NQPQ++T F +PL+NISPRPISSFV++M+ ++
Sbjct: 159 IPSNTVVPGAFFMVP---SMPGQFNQPQIFT-FPAAASPLINISPRPISSFVSSMQ-SNI 213
Query: 579 PVPVP 593
V +P
Sbjct: 214 AVALP 218
>ref|XP_002302554.1| predicted protein [Populus trichocarpa] gi|222844280|gb|EEE81827.1|
predicted protein [Populus trichocarpa]
Length = 348
Score = 75.1 bits (183), Expect(2) = 4e-23
Identities = 48/116 (41%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Frame = +1
Query: 1 KSDGETIRWLLEHAEXXXXXXXXXXXXXXXXMSVGGTLKIXXXXXXXXXXXXDMNKKKRK 180
KSDGETIRWLLEHAE MSV GTLKI K RK
Sbjct: 119 KSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPITTNSSSGLGQPNATKNRK 178
Query: 181 RPVTSDFFDPINDGVSVSSGLAPIQASAVSA----------TAYQQHQGLVPMWAL 318
RP S++ D +ND VSVS+ LAP+ + T QGLVPMWA+
Sbjct: 179 RPANSEYVD-VNDTVSVSASLAPVTTQQPQSQPQLPPQPQQTVAAVPQGLVPMWAI 233
Score = 58.5 bits (140), Expect(2) = 4e-23
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 4/65 (6%)
Frame = +3
Query: 411 VPSNAT----FWMIPPPASIPGPSNQPQLWTTFTPTVTPLVNISPRPISSFVTTMRPPDV 578
+PSNA F+M+P SI GPSNQPQ++T F TPL+NIS RPISSFV++M+ ++
Sbjct: 233 IPSNAVVPGAFFMVP---SIAGPSNQPQIFT-FPAAATPLINISARPISSFVSSMQ-SNM 287
Query: 579 PVPVP 593
V VP
Sbjct: 288 AVAVP 292