BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002180
         (1233 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78612.1| hypothetical protein VITISV_028922 [Vitis vinifera]   352   9e-95
ref|XP_004143147.1| PREDICTED: 50S ribosomal protein L4, chlorop...   341   2e-91
ref|XP_002309469.1| predicted protein [Populus trichocarpa] gi|2...   335   1e-89
ref|XP_002525600.1| 50S ribosomal protein L4, putative [Ricinus ...   323   4e-86
sp|O80361.1|RK4_TOBAC RecName: Full=50S ribosomal protein L4, ch...   312   1e-82

>emb|CAN78612.1| hypothetical protein VITISV_028922 [Vitis vinifera]
          Length = 306

 Score =  352 bits (904), Expect = 9e-95
 Identities = 177/222 (79%), Positives = 194/222 (87%)
 Frame = +1

Query: 103 KPLKPLSIHAQLSTIPILSFEGEKIGETYLDLKSAPPETARAVVHRGIITDQQNSRRGTA 282
           KPLKPLS+ + L  IPILSF GEK+GET L+LKSAP +TARAVVHRGIITD QN RRGTA
Sbjct: 39  KPLKPLSVRSDLVAIPILSFTGEKVGETQLNLKSAPLDTARAVVHRGIITDLQNRRRGTA 98

Query: 283 STLTRAEVRGGGKKPYPQKKTGRARRGSQRTPLRXXXXXXXXXXXXDWSIKINRKEKRLA 462
           STLTR EVRGGGKKPYPQKKTGRARRGSQRTPLR            DWSIKINRKEKRLA
Sbjct: 99  STLTRGEVRGGGKKPYPQKKTGRARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLA 158

Query: 463 ISTALSSASVNTIVVEDFVDKFDKPKTKEFIEALKRWGLDPNEKSMFLLNEVSDNVKLSS 642
           ISTA+SSA+VNTIVVEDF DKFDKPKTKEFI A+KRWG+DP EKSMFL+ EVSDNV+LSS
Sbjct: 159 ISTAMSSAAVNTIVVEDFSDKFDKPKTKEFISAMKRWGIDPKEKSMFLMTEVSDNVRLSS 218

Query: 643 RNIGTVKMLTPRTLNLFDILNADKVVLTKTTVDYLNRMYGLD 768
           RNIGT+KMLTPRTLNLFDILN+DK+VLT+ TVDYLNRMY ++
Sbjct: 219 RNIGTLKMLTPRTLNLFDILNSDKLVLTQETVDYLNRMYAVE 260


>ref|XP_004143147.1| PREDICTED: 50S ribosomal protein L4, chloroplastic-like [Cucumis
           sativus] gi|449496602|ref|XP_004160176.1| PREDICTED: 50S
           ribosomal protein L4, chloroplastic-like [Cucumis
           sativus]
          Length = 288

 Score =  341 bits (875), Expect = 2e-91
 Identities = 171/226 (75%), Positives = 195/226 (86%), Gaps = 1/226 (0%)
 Frame = +1

Query: 97  SFKP-LKPLSIHAQLSTIPILSFEGEKIGETYLDLKSAPPETARAVVHRGIITDQQNSRR 273
           S KP  K LSI ++L+T+P+LSF G+K+GETYLDLKSAPPETARAVVHR IITDQQN RR
Sbjct: 37  SLKPQTKTLSISSELATLPVLSFTGQKVGETYLDLKSAPPETARAVVHRAIITDQQNKRR 96

Query: 274 GTASTLTRAEVRGGGKKPYPQKKTGRARRGSQRTPLRXXXXXXXXXXXXDWSIKINRKEK 453
           GTASTLTRAEV GGGKKPY QKKTGRARRGS RTPLR            DWSIKINRKEK
Sbjct: 97  GTASTLTRAEVSGGGKKPYKQKKTGRARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEK 156

Query: 454 RLAISTALSSASVNTIVVEDFVDKFDKPKTKEFIEALKRWGLDPNEKSMFLLNEVSDNVK 633
           +LAISTA++SA+VNTIVVE+F DKF+KPKTKEFI ALKRWG+DP EKS+FL+ EVSDNV+
Sbjct: 157 KLAISTAVASAAVNTIVVEEFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVR 216

Query: 634 LSSRNIGTVKMLTPRTLNLFDILNADKVVLTKTTVDYLNRMYGLDY 771
           LSSRNIGT+K+LTPRTLNLFDIL++DK+VLT T VDYLN  YG++Y
Sbjct: 217 LSSRNIGTLKLLTPRTLNLFDILDSDKLVLTPTAVDYLNERYGINY 262


>ref|XP_002309469.1| predicted protein [Populus trichocarpa] gi|222855445|gb|EEE92992.1|
           predicted protein [Populus trichocarpa]
          Length = 279

 Score =  335 bits (859), Expect = 1e-89
 Identities = 175/239 (73%), Positives = 195/239 (81%), Gaps = 6/239 (2%)
 Frame = +1

Query: 73  LPKSPHQKSFKP---LKPLSIHAQLSTIPILSFEGEKIGETYLDLKSAPPETARAVVHRG 243
           +PK     + KP   LK LSI  Q++T+PILSF GEKIGETYLDLKSAPPETARAVVHRG
Sbjct: 23  IPKLTSLSTTKPQYSLKSLSISCQVATLPILSFTGEKIGETYLDLKSAPPETARAVVHRG 82

Query: 244 IITDQQNSRRGTASTLTRAEVRGGGKKPYPQKKTGRARRGSQRTPLRXXXXXXXXXXXXD 423
           IITDQQN RRGTASTLTR EVRGGG+KPYPQKKTGRARRGS R+PLR            D
Sbjct: 83  IITDQQNKRRGTASTLTRGEVRGGGRKPYPQKKTGRARRGSMRSPLRPGGGVIFGPKPRD 142

Query: 424 WSIKINRKEKRLAISTALSSA---SVNTIVVEDFVDKFDKPKTKEFIEALKRWGLDPNEK 594
           WSIKINRKEKRLA+STALSSA   S + I VE+F DKF+KPKTKEFIEA+ RWGLDP EK
Sbjct: 143 WSIKINRKEKRLAMSTALSSAASESESVICVEEFGDKFEKPKTKEFIEAMNRWGLDPKEK 202

Query: 595 SMFLLNEVSDNVKLSSRNIGTVKMLTPRTLNLFDILNADKVVLTKTTVDYLNRMYGLDY 771
            MFL+ +VSDNV LSSRNIGT++MLTPRTLNLFDILN+DK+VLT  TVDYLN  YG+D+
Sbjct: 203 VMFLMMDVSDNVGLSSRNIGTLRMLTPRTLNLFDILNSDKLVLTPDTVDYLNGRYGVDF 261


>ref|XP_002525600.1| 50S ribosomal protein L4, putative [Ricinus communis]
           gi|223535036|gb|EEF36718.1| 50S ribosomal protein L4,
           putative [Ricinus communis]
          Length = 283

 Score =  323 bits (829), Expect = 4e-86
 Identities = 163/217 (75%), Positives = 184/217 (84%)
 Frame = +1

Query: 118 LSIHAQLSTIPILSFEGEKIGETYLDLKSAPPETARAVVHRGIITDQQNSRRGTASTLTR 297
           LSI  Q+ST+PILSF GEKIGETYLDLK+APP+TARAVVHR IITDQQN RRGTASTLTR
Sbjct: 45  LSISCQVSTLPILSFTGEKIGETYLDLKTAPPDTARAVVHRAIITDQQNKRRGTASTLTR 104

Query: 298 AEVRGGGKKPYPQKKTGRARRGSQRTPLRXXXXXXXXXXXXDWSIKINRKEKRLAISTAL 477
           AEVRGGGKKPY QKKTGRARRGS RTPLR            DWSIKIN+KEKRLAISTAL
Sbjct: 105 AEVRGGGKKPYQQKKTGRARRGSSRTPLRPGGGVIFGPKPRDWSIKINKKEKRLAISTAL 164

Query: 478 SSASVNTIVVEDFVDKFDKPKTKEFIEALKRWGLDPNEKSMFLLNEVSDNVKLSSRNIGT 657
            SA+ + + VE+F DKF+KPKTK+FIEA+KRWGLDP EK MFL+ +V+D+V LSSRNIGT
Sbjct: 165 CSATESMLCVEEFGDKFEKPKTKDFIEAMKRWGLDPKEKVMFLMMDVADSVGLSSRNIGT 224

Query: 658 VKMLTPRTLNLFDILNADKVVLTKTTVDYLNRMYGLD 768
           ++MLTPRTLNLFDILN+DK+VLT   VDYLN  YG+D
Sbjct: 225 LRMLTPRTLNLFDILNSDKLVLTPDAVDYLNGRYGVD 261


>sp|O80361.1|RK4_TOBAC RecName: Full=50S ribosomal protein L4, chloroplastic; AltName:
           Full=CL4; AltName: Full=R-protein L4; Flags: Precursor
           gi|3298439|dbj|BAA31510.1| chloroplast ribosomal protein
           L4 [Nicotiana tabacum]
          Length = 282

 Score =  312 bits (799), Expect = 1e-82
 Identities = 158/231 (68%), Positives = 191/231 (82%)
 Frame = +1

Query: 70  ILPKSPHQKSFKPLKPLSIHAQLSTIPILSFEGEKIGETYLDLKSAPPETARAVVHRGII 249
           +L +SP Q S   +   +I ++++TIPILSF+G ++G T L+LKSAP +TARAVVHRG+ 
Sbjct: 25  LLFRSPKQLSVAAIA--TIRSEVATIPILSFDGAEVGSTTLNLKSAPLDTARAVVHRGLT 82

Query: 250 TDQQNSRRGTASTLTRAEVRGGGKKPYPQKKTGRARRGSQRTPLRXXXXXXXXXXXXDWS 429
           TD +N RRGTASTLTR+EVRGGG KPYPQKKTGRARRGS RTPLR            DWS
Sbjct: 83  TDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWS 142

Query: 430 IKINRKEKRLAISTALSSASVNTIVVEDFVDKFDKPKTKEFIEALKRWGLDPNEKSMFLL 609
           +KIN+KEKRLAISTALSSAS NTIVVE+F DKF+KPKTKEFI+ ++RWGLDP EKS+FL+
Sbjct: 143 VKINKKEKRLAISTALSSASENTIVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLM 202

Query: 610 NEVSDNVKLSSRNIGTVKMLTPRTLNLFDILNADKVVLTKTTVDYLNRMYG 762
            +VSDNV LSSRNIGT+KMLTPRTLNLFDIL+++K+VLTK+ VD+LN  YG
Sbjct: 203 TDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLTKSAVDFLNERYG 253