BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002170
         (1285 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526000.1| cleavage and polyadenylation specificity fac...   261   2e-67
ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261...   256   9e-66
ref|XP_003518612.1| PREDICTED: E3 ubiquitin protein ligase RIE1-...   250   5e-64
ref|XP_003529221.1| PREDICTED: E3 ubiquitin protein ligase RIE1-...   248   3e-63
ref|XP_002314782.1| predicted protein [Populus trichocarpa] gi|2...   246   7e-63

>ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
            communis] gi|223534732|gb|EEF36424.1| cleavage and
            polyadenylation specificity factor, putative [Ricinus
            communis]
          Length = 963

 Score =  261 bits (668), Expect = 2e-67
 Identities = 124/196 (63%), Positives = 144/196 (73%), Gaps = 3/196 (1%)
 Frame = -3

Query: 686  TGNRSSIAKRCESINTMASFFWWIVGFYWIVSGGDILLHNAPRLYWLXXXXXXXXXXXXX 507
            T NRSS+ KRCES+NTMASF WWIVGFYW+VSGGD LL NAP LYWL             
Sbjct: 768  TSNRSSVIKRCESVNTMASFLWWIVGFYWVVSGGDELLQNAPHLYWLAVVFLAFDVFFAI 827

Query: 506  FCVALACMXXXXXXXXXXXXXAVLYAVAGQEGATESDLSILRKYNYKVFTNGEKSTGGAG 327
            FCV LAC+             A+LYAVAGQEGA+E+DLSIL KY +++    EK + GAG
Sbjct: 828  FCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQLTVEEEKPSVGAG 887

Query: 326  RMVPVH---GELADTHVLLPEDAECCICLSSYEDAAELHALPCSHHFHSTCIVKWLKINA 156
            +MVP+    G LA+  +LLPEDAECCICL  YED AELH LPC+HHFHSTCIVKWLK+NA
Sbjct: 888  KMVPIETSSGYLANERILLPEDAECCICLCPYEDGAELHTLPCNHHFHSTCIVKWLKMNA 947

Query: 155  SCPLCKYNILKGNDQI 108
            +CPLCKYNILKGN+Q+
Sbjct: 948  TCPLCKYNILKGNEQV 963



 Score =  124 bits (312), Expect = 4e-26
 Identities = 63/113 (55%), Positives = 74/113 (65%)
 Frame = -3

Query: 1217 MAEQQQQTIGSEEGVPLLRPRDVRPXXXXXXXXXXXXXXXXGPSNMVRETAAVQLEERRA 1038
            M+     T  SE   PLL PR   P                GPS +VRETAA++LEERRA
Sbjct: 599  MSTTATTTAESESHAPLLHPRQEAPRAASLAMLLGRVTGRRGPSMLVRETAALELEERRA 658

Query: 1037 DWGYSKPVVALDIAWNLAFTVVSIVMLSSTLGERPNTPIRVWIGGYALQCVIH 879
            DWGYSKPVVALD+ WN AF VVSI ML  ++ E+PNTPIR+WI GYALQC++H
Sbjct: 659  DWGYSKPVVALDMVWNTAFVVVSITMLILSVKEKPNTPIRIWICGYALQCLVH 711


>ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261060 [Vitis vinifera]
          Length = 2299

 Score =  256 bits (654), Expect = 9e-66
 Identities = 126/200 (63%), Positives = 148/200 (74%), Gaps = 4/200 (2%)
 Frame = -3

Query: 695  SANTG-NRSSIAKRCESINTMASFFWWIVGFYWIVSGGDILLHNAPRLYWLXXXXXXXXX 519
            SA+ G N+SS+ KRCES+NTMASF WWIVGFYW+VSGG+ LL NAPRLYWL         
Sbjct: 2101 SASGGFNQSSVTKRCESVNTMASFLWWIVGFYWVVSGGEALLQNAPRLYWLAVVFLAFDV 2160

Query: 518  XXXXFCVALACMXXXXXXXXXXXXXAVLYAVAGQEGATESDLSILRKYNYKVFTNGEKST 339
                FCV LAC+             A+LYAVAGQEGA+E+DLS+L +Y ++   N EKS 
Sbjct: 2161 FFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPRYRFEA-NNEEKSG 2219

Query: 338  GGAGRMVPVH---GELADTHVLLPEDAECCICLSSYEDAAELHALPCSHHFHSTCIVKWL 168
             GAG M+P     G LA+  +LLPEDAECCICLSSYED AELHALPC+HHFHSTCI KWL
Sbjct: 2220 VGAGTMIPTETSSGYLANERILLPEDAECCICLSSYEDGAELHALPCNHHFHSTCIAKWL 2279

Query: 167  KINASCPLCKYNILKGNDQI 108
            K+NA+CPLCKYNILKG++QI
Sbjct: 2280 KMNATCPLCKYNILKGSEQI 2299



 Score =  114 bits (286), Expect = 4e-23
 Identities = 53/71 (74%), Positives = 61/71 (85%)
 Frame = -3

Query: 1091 PSNMVRETAAVQLEERRADWGYSKPVVALDIAWNLAFTVVSIVMLSSTLGERPNTPIRVW 912
            PS +VRETAA +LEERRADWGYSKPVVALD+ WN++F +VSIVML  T  ERPNTPIR+W
Sbjct: 1988 PSMLVRETAARELEERRADWGYSKPVVALDMMWNMSFVIVSIVMLICTARERPNTPIRLW 2047

Query: 911  IGGYALQCVIH 879
            I GYALQC +H
Sbjct: 2048 ICGYALQCGVH 2058


>ref|XP_003518612.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like [Glycine max]
          Length = 357

 Score =  250 bits (639), Expect = 5e-64
 Identities = 121/199 (60%), Positives = 145/199 (72%), Gaps = 3/199 (1%)
 Frame = -3

Query: 695 SANTGNRSSIAKRCESINTMASFFWWIVGFYWIVSGGDILLHNAPRLYWLXXXXXXXXXX 516
           S NT +RS  AKRCES+NT  SF WWIVGFYW+VSGGDILL +APRLYWL          
Sbjct: 160 SGNT-SRSRFAKRCESLNTGVSFLWWIVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVF 218

Query: 515 XXXFCVALACMXXXXXXXXXXXXXAVLYAVAGQEGATESDLSILRKYNYKVFTNGEKSTG 336
              FCV LAC+             A+LYAVAGQEGA+E+DLS+L KY +++ ++ +K +G
Sbjct: 219 FAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPKYKFRILSDVDKPSG 278

Query: 335 GAGRMVPVH---GELADTHVLLPEDAECCICLSSYEDAAELHALPCSHHFHSTCIVKWLK 165
           GAG MVP+      L +   LL EDAECCICL SYED AELHALPC+HHFHS+CIVKWLK
Sbjct: 279 GAGSMVPIETSSAYLENERTLLLEDAECCICLCSYEDGAELHALPCNHHFHSSCIVKWLK 338

Query: 164 INASCPLCKYNILKGNDQI 108
           +NA+CPLCKYNILKGN+Q+
Sbjct: 339 MNATCPLCKYNILKGNEQV 357



 Score =  116 bits (291), Expect = 1e-23
 Identities = 63/114 (55%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
 Frame = -3

Query: 1217 MAEQQQQTIGSEEGVPLLRPR-DVRPXXXXXXXXXXXXXXXXGPSNMVRETAAVQLEERR 1041
            M+ Q   T   E   PLLR R D                   GPS +VRETAA +LEERR
Sbjct: 1    MSSQTAPTEAPEPYTPLLRSRTDAGRGPAPALALLLGRAGRRGPSMLVRETAARELEERR 60

Query: 1040 ADWGYSKPVVALDIAWNLAFTVVSIVMLSSTLGERPNTPIRVWIGGYALQCVIH 879
            ADWGYSKPVVALD++WN+AF VVS  ML+ T  E P TPIRVWI GYALQC++H
Sbjct: 61   ADWGYSKPVVALDMSWNMAFVVVSAAMLACTTSEHPTTPIRVWIVGYALQCLVH 114


>ref|XP_003529221.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like [Glycine max]
          Length = 352

 Score =  248 bits (632), Expect = 3e-63
 Identities = 116/191 (60%), Positives = 140/191 (73%), Gaps = 3/191 (1%)
 Frame = -3

Query: 671 SIAKRCESINTMASFFWWIVGFYWIVSGGDILLHNAPRLYWLXXXXXXXXXXXXXFCVAL 492
           S  KRCE +NT  SF WWIVGFYW+VSGG+ILL +APRLYWL             FCV L
Sbjct: 162 SFTKRCELLNTGVSFLWWIVGFYWVVSGGNILLQDAPRLYWLVVVFLAFDVFFAIFCVVL 221

Query: 491 ACMXXXXXXXXXXXXXAVLYAVAGQEGATESDLSILRKYNYKVFTNGEKSTGGAGRMVPV 312
           AC+             A+LYAVAGQEGA+E+DLS+L KY +++ ++ +K +GGAG MVP+
Sbjct: 222 ACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPKYRFRILSDEDKPSGGAGSMVPI 281

Query: 311 H---GELADTHVLLPEDAECCICLSSYEDAAELHALPCSHHFHSTCIVKWLKINASCPLC 141
                 LA+   LLPEDAECCICL SYED AELHALPC+HHFHS+CIVKWLK+NA+CPLC
Sbjct: 282 ETSSAYLANERTLLPEDAECCICLCSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLC 341

Query: 140 KYNILKGNDQI 108
           KYNILKGN+Q+
Sbjct: 342 KYNILKGNEQV 352



 Score =  119 bits (299), Expect = 1e-24
 Identities = 62/103 (60%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
 Frame = -3

Query: 1184 EEGVPLLRP-RDVRPXXXXXXXXXXXXXXXXGPSNMVRETAAVQLEERRADWGYSKPVVA 1008
            E   PLLRP  D                   GPS +VRETAA +LEERRADWGYSKPVVA
Sbjct: 13   ESHAPLLRPLTDASRAPVPTLALLLGRAGRRGPSMLVRETAARELEERRADWGYSKPVVA 72

Query: 1007 LDIAWNLAFTVVSIVMLSSTLGERPNTPIRVWIGGYALQCVIH 879
            LD++WN+AF VV+ VML+ T  ERPNTPIRVWI GYALQC++H
Sbjct: 73   LDMSWNMAFVVVTAVMLACTTAERPNTPIRVWIVGYALQCLVH 115


>ref|XP_002314782.1| predicted protein [Populus trichocarpa] gi|222863822|gb|EEF00953.1|
           predicted protein [Populus trichocarpa]
          Length = 295

 Score =  246 bits (629), Expect = 7e-63
 Identities = 122/186 (65%), Positives = 134/186 (72%), Gaps = 4/186 (2%)
 Frame = -3

Query: 662 KRCESINTMASFFWWIVGFYWIVSGGDILLHNAPRLYWLXXXXXXXXXXXXXFCVALACM 483
           KRCES+NTM SF WWIVGFYW+VSGGD LL NAPRLYWL             FCV LAC+
Sbjct: 110 KRCESVNTMVSFLWWIVGFYWVVSGGDALLQNAPRLYWLAVVFLAFDVFFAIFCVVLACL 169

Query: 482 XXXXXXXXXXXXXAVLYAVAGQEGATESDLSILRKYNYKVFTNGEKSTG-GAGRMVPVH- 309
                        A+LYAVAGQEGA+E+DLSIL KY Y V  N EK    GAG+MVPV  
Sbjct: 170 IGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYKYLVMGNEEKRPRVGAGKMVPVET 229

Query: 308 --GELADTHVLLPEDAECCICLSSYEDAAELHALPCSHHFHSTCIVKWLKINASCPLCKY 135
             G L+   VLLPEDAECCICLS YED AELHALPC+HHFH+ CIVKWLK+NA+CPLCKY
Sbjct: 230 SSGYLSTERVLLPEDAECCICLSPYEDGAELHALPCNHHFHAMCIVKWLKMNATCPLCKY 289

Query: 134 NILKGN 117
           NILKGN
Sbjct: 290 NILKGN 295



 Score =  108 bits (269), Expect = 4e-21
 Identities = 51/71 (71%), Positives = 59/71 (83%)
 Frame = -3

Query: 1091 PSNMVRETAAVQLEERRADWGYSKPVVALDIAWNLAFTVVSIVMLSSTLGERPNTPIRVW 912
            PS +VRETAA +L+ERRAD GYSKPVVALDI WN AF VVS+ ML  T  ERPNTPIR+W
Sbjct: 13   PSMLVRETAARELDERRADLGYSKPVVALDILWNAAFVVVSVTMLVVTAKERPNTPIRLW 72

Query: 911  IGGYALQCVIH 879
            I GY+LQC++H
Sbjct: 73   ICGYSLQCLVH 83