BLASTX nr result

ID: Coptis24_contig00002143 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002143
         (272 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40274.3| unnamed protein product [Vitis vinifera]               65   6e-09
emb|CAN60920.1| hypothetical protein VITISV_019335 [Vitis vinifera]    65   6e-09
ref|XP_002518693.1| conserved hypothetical protein [Ricinus comm...    63   3e-08
ref|XP_002300232.1| predicted protein [Populus trichocarpa] gi|2...    62   5e-08
gb|AFK40095.1| unknown [Medicago truncatula]                           62   6e-08

>emb|CBI40274.3| unnamed protein product [Vitis vinifera]
          Length = 173

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 32/36 (88%), Positives = 33/36 (91%), Gaps = 1/36 (2%)
 Frame = -2

Query: 271 EGLKLDDINPGIYSVHCLPLRL-PADGSPIRCILIK 167
           EGLKLDDI PGIYSVHCLPLRL  A+GSPIRCILIK
Sbjct: 137 EGLKLDDIKPGIYSVHCLPLRLFGAEGSPIRCILIK 172


>emb|CAN60920.1| hypothetical protein VITISV_019335 [Vitis vinifera]
          Length = 246

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 32/36 (88%), Positives = 33/36 (91%), Gaps = 1/36 (2%)
 Frame = -2

Query: 271 EGLKLDDINPGIYSVHCLPLRL-PADGSPIRCILIK 167
           EGLKLDDI PGIYSVHCLPLRL  A+GSPIRCILIK
Sbjct: 210 EGLKLDDIKPGIYSVHCLPLRLFGAEGSPIRCILIK 245


>ref|XP_002518693.1| conserved hypothetical protein [Ricinus communis]
           gi|223542074|gb|EEF43618.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 260

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 30/36 (83%), Positives = 32/36 (88%), Gaps = 1/36 (2%)
 Frame = -2

Query: 271 EGLKLDDINPGIYSVHCLPLR-LPADGSPIRCILIK 167
           EGLKLDDI PG+Y+VHCLPLR L ADGSP RCILIK
Sbjct: 225 EGLKLDDIQPGLYNVHCLPLRLLRADGSPARCILIK 260


>ref|XP_002300232.1| predicted protein [Populus trichocarpa] gi|222847490|gb|EEE85037.1|
           predicted protein [Populus trichocarpa]
          Length = 268

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 29/36 (80%), Positives = 32/36 (88%), Gaps = 1/36 (2%)
 Frame = -2

Query: 271 EGLKLDDINPGIYSVHCLPLRL-PADGSPIRCILIK 167
           E LKLDDI PG+YSVHCLPLRL  A+GSPIRC+LIK
Sbjct: 233 EALKLDDIQPGVYSVHCLPLRLFGAEGSPIRCVLIK 268


>gb|AFK40095.1| unknown [Medicago truncatula]
          Length = 254

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 30/36 (83%), Positives = 32/36 (88%), Gaps = 1/36 (2%)
 Frame = -2

Query: 271 EGLKLDDINPGIYSVHCLPLRLP-ADGSPIRCILIK 167
           E LKLDDI PG+YSVHCLPLRL  A+GSPIRCILIK
Sbjct: 218 ESLKLDDIPPGLYSVHCLPLRLAGAEGSPIRCILIK 253


Top