BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002028
         (687 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB75484.1| putative protein [Arabidopsis thaliana]                78   2e-13
gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. ...    77   3e-12
ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6...    77   4e-12
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...    75   1e-11
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    71   2e-10

>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score = 77.8 bits (190), Expect(2) = 2e-13
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
 Frame = +2

Query: 47   VWKLPILARVQLFT*KILKNIIPTNENLIKHHLNIEPMCCLCGNTLEDSNYIFFLCEWTR 226
            +W LPI+ +++ F  +IL   +PT + L    + I+P C  C    E  N+  F C +  
Sbjct: 667  IWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFAT 726

Query: 227  GIWFTSPLNL---RVDANDFDPGDWFESCLKLEKSDTVDEPSKLTLFIAILDAIWQARNN 397
              W  S   L    + +N+ +  D   + L L ++ T+ +  KL  F  +L  IW+ARNN
Sbjct: 727  MAWRLSDTPLYRSSILSNNIE--DNISNILLLLQNTTITDSQKLIPF-WLLWRIWKARNN 783

Query: 398  LLFSNIRPSPESVLQHASTINGYWFKAYEDSNPQEEPPDLT 520
            ++F+N+R SP   +  A      W  A +   P+  P   T
Sbjct: 784  VVFNNLRESPSITVVRAKAETNEWLNATQTQGPRRLPKRTT 824



 Score = 23.9 bits (50), Expect(2) = 2e-13
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 507 RLT*HESVPKESAWLLPPPGWFKLNFDAAFKL 602
           RL    +    + W+ P   + K NFDA+F +
Sbjct: 818 RLPKRTTAAGNTTWVKPQMPYIKCNFDASFNV 849


>gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. pekinensis]
          Length = 1555

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 2/145 (1%)
 Frame = +2

Query: 41   SHVWKLPILARVQLFT*KILKNIIPTNENLIKHHLNIEPMCCLCGNTLEDSNYIFFLCEW 220
            +HVWKL    +V+LF  K+LK  +P  E L++ H++I+P C  CG+  E   ++ F C++
Sbjct: 1249 NHVWKLDCAPKVKLFVWKVLKGAVPVGERLLERHIDIDPRCKRCGSN-ESITHLLFHCQF 1307

Query: 221  TRGIWFTSPLNLRVDANDFDP--GDWFESCLKLEKSDTVDEPSKLTLFIAILDAIWQARN 394
             + +W  +PL    D         DW    L   K+      +   L   I   IW+ARN
Sbjct: 1308 AQRVWHLAPLATAPDFRGMIDLMADW--PALSNLKALPPTGIASGNLVPWIFWNIWKARN 1365

Query: 395  NLLFSNIRPSPESVLQHASTINGYW 469
              +F  +  SPE  L  A  +   W
Sbjct: 1366 RFVFEGVSASPEDTLSSAIRLAREW 1390


>ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
           gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase
           III subunit RPC6 [Medicago truncatula]
          Length = 456

 Score = 76.6 bits (187), Expect = 4e-12
 Identities = 46/134 (34%), Positives = 66/134 (49%)
 Frame = +2

Query: 47  VWKLPILARVQLFT*KILKNIIPTNENLIKHHLNIEPMCCLCGNTLEDSNYIFFLCEWTR 226
           +WKLP+  RV+ F  K+ +NIIPT  NL +  + ++ +C LC +  E SN+ F  C  T 
Sbjct: 263 IWKLPLPTRVRNFMWKLARNIIPTRCNLRRRGVVLDTVCPLCFDADESSNHRFMACPMTL 322

Query: 227 GIWFTSPLNLRVDANDFDPGDWFESCLKLEKSDTVDEPSKLTLFIAILDAIWQARNNLLF 406
            +WF SPL  +      D   W  S L      +  EP  + LF   L  IW  RN ++F
Sbjct: 323 QVWFASPLGFQPPPQT-DLNAWLLSWL------SAKEPLAVQLFCVCLWKIWFFRNQVIF 375

Query: 407 SNIRPSPESVLQHA 448
           + +   P  V   A
Sbjct: 376 NQVVFEPRMVAASA 389


>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 44/145 (30%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
 Frame = +2

Query: 11   SSSYSNQRNLSHVWKLPILARVQLFT*KILKNIIPTNENLIKHHLNIEPMCCLCGNTLED 190
            +++  N++  +  W   +L + + FT ++L   + T+ NL K ++ I+ MC LC    E+
Sbjct: 1045 NTTKENRQFWNKFWASDLLPKWKFFTWRLLNKALATSSNLRKRNILIQEMCSLCKQDKEN 1104

Query: 191  SNYIFFLCEWTRGIWFTSPLNLRV-DANDFDPGDWFESCLK-LEKSDTVDEPSKLTLFIA 364
             +++F  C  +R +W +S L +R+         DW ++ LK L K D V  P +++ FIA
Sbjct: 1105 ESHLFRDCNISRHVWASSLLGIRICPMTVISIEDWIKNFLKLLWKEDGVKSP-RVSEFIA 1163

Query: 365  ILDAIWQARNNLLFSNIRPSPESVL 439
             L AIW  RNN++F +   +P +++
Sbjct: 1164 TLWAIWIHRNNVIFRSEEVNPVAIM 1188


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score = 71.2 bits (173), Expect = 2e-10
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 3/159 (1%)
 Frame = +2

Query: 41   SHVWKLPILARVQLFT*KILKNIIPTNENLIKHHLNIEPMCCLCGNTLEDSNYIFFLCEW 220
            + +W LPI+ +++ F  + L   + T E L    + I+P+C  C    E  N+  F C +
Sbjct: 1200 TRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPF 1259

Query: 221  TRGIWFTSPLNL---RVDANDFDPGDWFESCLKLEKSDTVDEPSKLTLFIAILDAIWQAR 391
                W+ S  +L   ++ +NDF+      + L   +  T+ +  KL L + ++  IW+AR
Sbjct: 1260 ATMAWWLSDSSLIRNQLMSNDFEEN--ISNILNFVQDTTMSDFHKL-LPVWLIWRIWKAR 1316

Query: 392  NNLLFSNIRPSPESVLQHASTINGYWFKAYEDSNPQEEP 508
            NN++F+  R SP   +  A      W  A +       P
Sbjct: 1317 NNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSP 1355