BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002027
         (1070 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276502.1| PREDICTED: splicing factor U2af small subuni...   305   1e-80
ref|XP_004145565.1| PREDICTED: splicing factor U2af small subuni...   294   3e-77
ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, pu...   293   5e-77
ref|XP_002300614.1| predicted protein [Populus trichocarpa] gi|2...   286   5e-75
ref|XP_002458285.1| hypothetical protein SORBIDRAFT_03g030670 [S...   286   8e-75

>ref|XP_002276502.1| PREDICTED: splicing factor U2af small subunit B isoform 1 [Vitis
            vinifera] gi|359491881|ref|XP_003634337.1| PREDICTED:
            splicing factor U2af small subunit B isoform 2 [Vitis
            vinifera]
          Length = 272

 Score =  305 bits (781), Expect = 1e-80
 Identities = 157/235 (66%), Positives = 168/235 (71%)
 Frame = -1

Query: 1016 LSPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELHKFGEIESLNIC 837
            +SPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDI+EEL KFGEIESLN+C
Sbjct: 42   ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELGKFGEIESLNVC 101

Query: 836  DNLADHMVGNVYVQFTEEDQAASALKALQGRFYSGRPIIADFSPVTDFREATCRQFEENN 657
            DNLADHM+GNVYVQF EE+QAA+AL+ALQGRFYSGRPIIADFSPVTDFREATCRQFEENN
Sbjct: 102  DNLADHMIGNVYVQFKEEEQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENN 161

Query: 656  CNRGGYCNFMHVKQIGRDLRKKLYGXXXXXXXXXXXXXXXXXXXXXXXSEGLXXXXXXXX 477
            CNRGGYCNFMHVK IGRDLR+KL+G                                   
Sbjct: 162  CNRGGYCNFMHVKLIGRDLRRKLFGRYSGYGRSRSRSRSLSPRYRRDSDR--RRSGDRGD 219

Query: 476  XXXXXXRSADRHGRYDSDGGRRRHGSPRHTXXXXXXXXXXXXXXXXEWNREREGR 312
                  RS D+HG   SDGGRRRHGSPR +                 WNRERE R
Sbjct: 220  YRGNGRRSGDKHG---SDGGRRRHGSPRRSRSPVREGSEERRARIELWNREREER 271


>ref|XP_004145565.1| PREDICTED: splicing factor U2af small subunit B-like [Cucumis
            sativus] gi|449485076|ref|XP_004157064.1| PREDICTED:
            splicing factor U2af small subunit B-like [Cucumis
            sativus]
          Length = 276

 Score =  294 bits (752), Expect = 3e-77
 Identities = 154/237 (64%), Positives = 166/237 (70%), Gaps = 4/237 (1%)
 Frame = -1

Query: 1016 LSPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELHKFGEIESLNIC 837
            +SPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEEL KFGEIESLN+C
Sbjct: 42   ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVC 101

Query: 836  DNLADHMVGNVYVQFTEEDQAASALKALQGRFYSGRPIIADFSPVTDFREATCRQFEENN 657
            DNLADHM+GNVYVQF EEDQAA+AL+ALQGRFYSGRPIIADFSPVTDFREATCRQ+EENN
Sbjct: 102  DNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENN 161

Query: 656  CNRGGYCNFMHVKQIGRDLRKKLYGXXXXXXXXXXXXXXXXXXXXXXXSEGLXXXXXXXX 477
            CNRGGYCNFMHVK IG+DLR+KL+G                                   
Sbjct: 162  CNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRSLSPRNRKEHDR--RERDYRDR 219

Query: 476  XXXXXXRSADRHGRYDSDGGRRRHGSPR----HTXXXXXXXXXXXXXXXXEWNRERE 318
                  RS +RH   D DGGRRR GSPR     +                +WNRERE
Sbjct: 220  DYRGNGRSKERH---DRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNRERE 273


>ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
            gi|223551442|gb|EEF52928.1| U2 snrnp auxiliary factor,
            small subunit, putative [Ricinus communis]
          Length = 272

 Score =  293 bits (750), Expect = 5e-77
 Identities = 153/235 (65%), Positives = 165/235 (70%), Gaps = 2/235 (0%)
 Frame = -1

Query: 1016 LSPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELHKFGEIESLNIC 837
            +SPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDI+EEL KFGEIESLN+C
Sbjct: 42   ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELGKFGEIESLNVC 101

Query: 836  DNLADHMVGNVYVQFTEEDQAASALKALQGRFYSGRPIIADFSPVTDFREATCRQFEENN 657
            DNLADHM+GNVYVQF EEDQAA+AL+ALQGRFYSGRPIIADFSPVTDFREATCRQFEENN
Sbjct: 102  DNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENN 161

Query: 656  CNRGGYCNFMHVKQIGRDLRKKLYG--XXXXXXXXXXXXXXXXXXXXXXXSEGLXXXXXX 483
            CNRGGYCNFMHVK IGRDLR+KL+G                         ++        
Sbjct: 162  CNRGGYCNFMHVKLIGRDLRRKLFGRYRGYRASRSRSRSVSPSRHRREKSNDRRERDYRD 221

Query: 482  XXXXXXXXRSADRHGRYDSDGGRRRHGSPRHTXXXXXXXXXXXXXXXXEWNRERE 318
                    RS DRH        RRRHGSPR +                +WNRERE
Sbjct: 222  RDYRGNGRRSGDRH-------DRRRHGSPRRSRSPVREGSEERRARIEQWNRERE 269


>ref|XP_002300614.1| predicted protein [Populus trichocarpa] gi|222842340|gb|EEE79887.1|
            predicted protein [Populus trichocarpa]
          Length = 273

 Score =  286 bits (733), Expect = 5e-75
 Identities = 146/235 (62%), Positives = 164/235 (69%), Gaps = 2/235 (0%)
 Frame = -1

Query: 1016 LSPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELHKFGEIESLNIC 837
            +SPTLLLSNMYQRPDMITPGVDAQGQP+DP KIQEHFE+FYEDI+EEL+KFGEIESLN+C
Sbjct: 42   ISPTLLLSNMYQRPDMITPGVDAQGQPLDPHKIQEHFEEFYEDIFEELNKFGEIESLNVC 101

Query: 836  DNLADHMVGNVYVQFTEEDQAASALKALQGRFYSGRPIIADFSPVTDFREATCRQFEENN 657
            DNLADHM+GNVYV F EEDQAA+AL+ALQGRFYSGRPIIADFSPVTDFREATCRQFEENN
Sbjct: 102  DNLADHMIGNVYVLFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENN 161

Query: 656  CNRGGYCNFMHVKQIGRDLRKKLYGXXXXXXXXXXXXXXXXXXXXXXXSEGLXXXXXXXX 477
            CNRGGYCNFMHVK IGRDLR+KL+G                        +          
Sbjct: 162  CNRGGYCNFMHVKLIGRDLRRKLFGRYRGYRVSRSRSRSVSPRKRERDYDRRERDYRDRD 221

Query: 476  XXXXXXRSAD--RHGRYDSDGGRRRHGSPRHTXXXXXXXXXXXXXXXXEWNRERE 318
                     +  R+ +YD +GGR+RHGS                    +WNRERE
Sbjct: 222  RDRDRDYRGNGRRNDKYDREGGRKRHGS------TVREGSEERRARIEQWNRERE 270


>ref|XP_002458285.1| hypothetical protein SORBIDRAFT_03g030670 [Sorghum bicolor]
            gi|241930260|gb|EES03405.1| hypothetical protein
            SORBIDRAFT_03g030670 [Sorghum bicolor]
          Length = 288

 Score =  286 bits (731), Expect = 8e-75
 Identities = 147/244 (60%), Positives = 163/244 (66%), Gaps = 11/244 (4%)
 Frame = -1

Query: 1016 LSPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELHKFGEIESLNIC 837
            +SPTL+L NMYQRPDMITPGVDAQGQPIDPRK+QEHFEDFYEDIYEEL KFGEIE+LN+C
Sbjct: 42   ISPTLVLVNMYQRPDMITPGVDAQGQPIDPRKMQEHFEDFYEDIYEELSKFGEIENLNVC 101

Query: 836  DNLADHMVGNVYVQFTEEDQAASALKALQGRFYSGRPIIADFSPVTDFREATCRQFEENN 657
            DNLADHM+GNVYVQF EEDQAA+A  ALQGRFYSGRPI+ DFSPVTDFREATCRQ+EEN+
Sbjct: 102  DNLADHMIGNVYVQFREEDQAAAAHTALQGRFYSGRPIVVDFSPVTDFREATCRQYEENS 161

Query: 656  CNRGGYCNFMHVKQIGRDLRKKLYGXXXXXXXXXXXXXXXXXXXXXXXSE--------GL 501
            CNRGGYCNFMHVK+IGRDLRKK++G                        +        G 
Sbjct: 162  CNRGGYCNFMHVKKIGRDLRKKMFGHYKRPYRGRSRSPSPHHRRERRDRDDYRGAGGGGG 221

Query: 500  XXXXXXXXXXXXXXRSADRHGRYDSDGGRRRHGS---PRHTXXXXXXXXXXXXXXXXEWN 330
                              RH RYD DGGRRRHG    PR                  +WN
Sbjct: 222  RGRDDYRGGGGGRRGGGSRHERYD-DGGRRRHGGSPPPRRARSPVRESSEERRAKIEQWN 280

Query: 329  RERE 318
            RER+
Sbjct: 281  RERD 284