BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001982
         (5422 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1670   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1658   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1580   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1517   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...  1514   0.0  

>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1670 bits (4324), Expect = 0.0
 Identities = 943/1806 (52%), Positives = 1179/1806 (65%), Gaps = 50/1806 (2%)
 Frame = -1

Query: 5365 TESVDSVKFSFLTSEEVESYSFKQVTSVELLDNLDRPVPGGLYDPALGPLEDHTICKSCG 5186
            TE V++VKFSF T EEV  YSFK++TS  +LD++ RPVPGGLYDPALG ++++T C+SCG
Sbjct: 58   TEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQSCG 117

Query: 5185 QSSFFCTGHCGHIEFICPIFNPLLFDVLFNIVRKMCFSCHHFMDARDPVEKCASQAELIL 5006
            Q SF+C GHCGHI+ +  ++NPLLF++L N+++K CF CHHF  +   V+K  SQ ELI 
Sbjct: 118  QRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLELIS 177

Query: 5005 KGEIDAASNGDVVLQNDLSV---LDGNGVKDTSD-----------HLKGKIWTSLQYSRA 4868
            KG++  A N D +  ++ S     DG+ V  +S            HLK + WTSLQ   A
Sbjct: 178  KGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEA 237

Query: 4867 MSMLDDFMKIKKKKCTRCMFKSPKITQPTFGWIHM-DTPDSTIRRNVLR-EYTQSSIDEA 4694
            MS++D+F+K+K + C  C  KSP++T+PTFGW HM    D+  R NV+R    +  +   
Sbjct: 238  MSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLERPLSRV 297

Query: 4693 EQEFITGGAENANDSCTRGIETD-DDLQSSGAVYDGTPNSSTKAFRDLGEGNVPSEFGKQ 4517
             +E  +   EN ND    G   D D+  SS A  DG  ++ TK     G    P EF KQ
Sbjct: 298  AEEKSSSEVENVNDMFPWGDGVDTDETHSSIAPTDGIQDTVTKRLERKG-AQAPIEFIKQ 356

Query: 4516 KTLSKGPLLPSEVKDHLKLLWDNETQLCSLICDIHRERLSMSEKKRSYSMFFIDVLLVPP 4337
            K+   GPLLPSEV+D ++ LW+NE +LCS I DI +ERL  S  K  YSMFF++ +LVPP
Sbjct: 357  KSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPP 416

Query: 4336 VKFRPLTKGGDSVTHHPQTVLLSRVLQSNIDLCNAL--NNDRSQMENRSLVLQQSVNVLF 4163
            +KFRP +KG  SV  HPQTVLL +VLQ+NI L NA   N++RS++ +R + LQQS+NVLF
Sbjct: 417  IKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLF 476

Query: 4162 GNKKSFGQ-RDNMGMGICQLLEKKEGLFRQKMMGKRVNYSCRSVISPDPYLAVNEIGIPP 3986
              K + GQ + + G GICQLLEKKEG+FRQKMMGKRVN++CRSVISPDPYLAVNEIGIPP
Sbjct: 477  DGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPP 536

Query: 3985 CFALKLTYPERVTDWNVKKLRNAILNGPDIHPGATEYSDQFSTRKLSNIGKMRTSVSKKF 3806
             FAL+LTYPE+VT WNV KLR+AI+NGP+IHPGAT Y D+ ST KL+   KMR S+S+K 
Sbjct: 537  YFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKL 596

Query: 3805 TTSRGDTSRGDVTKPGRSVEHEHEGKVVSRHLQDGDIVLVNRQPTLHKPGIMAHVVRVLN 3626
             +SRG      V +PGRS ++E EGK+V RHLQDGDIVLVNRQPTLHKP IMAHVVRVL 
Sbjct: 597  PSSRGV-----VAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLK 651

Query: 3625 GEKTIRMHYANCSTYNADFDGDEMNVHFPQDEIARAEAFHIVNANNQYIIPTSGDTKRGL 3446
            GEKT+RMHYANCSTYNADFDGDEMNVHFPQDEI+RAEA++IVNANNQYI+P+ GD  RGL
Sbjct: 652  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGL 711

Query: 3445 IQDHIVSGVLLTKKDTFLSRDEYTHLLYSSGLFAAGRGSFVGKSGQKVSAIVSEDEIELL 3266
            IQDHIVS VLLTKKDTFL+R++Y  LLYSSGL ++G GSF+GK G+KVS + SEDE++ L
Sbjct: 712  IQDHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPL 770

Query: 3265 VPAILKPEPLWTGKQVITSLLNRMTKGEGLPPFTFEAKCTIDEDIWTSQCGD-------- 3110
            +PAI KPEPLW+GKQVIT++LN +T+G    PFT E    I  + + S+  +        
Sbjct: 771  LPAIWKPEPLWSGKQVITAVLNHITRGR--KPFTTEKDGKIPREYFGSEIDEKKSGKGKD 828

Query: 3109 ----------------DVQFRILKNDFLNGVVDKAQFGKYGMVHTVQELYGSKTAGALLS 2978
                            + +  I KN+ + GV+DKAQF KYG+VH VQELYGS TAG LLS
Sbjct: 829  PGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLS 888

Query: 2977 GLSRLFTVFLQLHGFTCGVDDLLLKQNIDIERRTKLKDANKIVESVYLKFVKGEDDQGKH 2798
             LSRLFTVFLQ+HGFTCGVDDLL+  N DI R+ +L  +  I E V+ KF+      G +
Sbjct: 889  VLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFI------GSN 942

Query: 2797 SEKIDLQSKPVNAKDENKERKELQVCIEKKVRDHGESTISLLDKMMSSAANVLTNAVNTI 2618
              KID    PV          +LQV +EK +  +GE+ I+ LD+MM +  N LT+ VN  
Sbjct: 943  HGKID----PV----------KLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVN-- 986

Query: 2617 IFPKKTKSLSEDKSNVESADKSKDKLAENLKGGFSKPFPKNCFSLMTISGAKGGQVNFXX 2438
                                  KD L +    G  KPFPKNC SLMT +GAKG  VNF  
Sbjct: 987  ----------------------KDLLLK----GLVKPFPKNCLSLMTTTGAKGSTVNFSQ 1020

Query: 2437 XXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALRAGGFITDCFLTGLRPQEYYFHCMAG 2258
                     LEGKRVP M+SGKTLPCFPPWD A RAGGFI+D FLTGL PQEYYFHCMAG
Sbjct: 1021 ISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAG 1080

Query: 2257 REGLVDTAVKTSRSGYLQRCLVKNLECLMVGYDRTVRDADGSIVQFCYGEDGVDVHKTSF 2078
            REGLVDTAVKTSRSGYLQRCL+KNLECL V YD TVRD+DGSIVQF YG+DGVDVH+TSF
Sbjct: 1081 REGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSF 1140

Query: 2077 MAKFDTLTSNHSVVLGRLMAQCKDDLEKSKDDHLTFDKCIEKLKEDHLTFDNYIEKLPLK 1898
            + +F+ L  N  VV                          EK  +D   F+ YI+KLP +
Sbjct: 1141 ITEFEALAVNEEVV-------------------------CEKFGQDG-KFNGYIQKLPKE 1174

Query: 1897 LVEVIYXXXXXXXXXXXXXEQHSSLVEKSRKLLPKEEMMKLMILKYLSSLAQPGEPVGVI 1718
            L                   +     +  +K   +++ + L+  KY+SSLAQPGEPVGV+
Sbjct: 1175 L-------RKKTKKFIEGFMEERQDFDNMKK---QKDFVNLVKQKYISSLAQPGEPVGVL 1224

Query: 1717 AAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASERILTPIMSCPLRKGKKG 1538
            AAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM A+  I TPIM+CPL+ G+  
Sbjct: 1225 AAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSK 1284

Query: 1537 EDAERLARSLRKVAVADVIKSMQVSVVPFFVQKHQASAVYKLKVELYPIDMYPKHSNIDL 1358
            +DAERLA  L+KV VAD+ +SM+VS+VPF VQ HQ  ++YKLK++LY   +YP H+ I L
Sbjct: 1285 DDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISL 1344

Query: 1357 DDCEKTLKSIFVPELVRAIDSHVAMLSKIAGIVNIVQKGESDLSEGTDE-ADPCNKVNRK 1181
            +DCE+TL+++FV EL  AI +H+ +LSKI+GI N +    S  S+ TDE A         
Sbjct: 1345 EDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGDGLAGGN 1404

Query: 1180 GXXXXXXXXXXXXXXXXXDAQKGKLQNSDEKEYEDGMGSEYIEGEAS-GFESEIDQVELE 1004
            G                 DAQK K Q SDE +Y D  G E  EGE S G   EID VE E
Sbjct: 1405 GDEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGDSEG-EPDEGEPSAGLTEEIDLVEDE 1463

Query: 1003 DDNSSDDKAPTIETDDXXXXXXXXXXXXXXXXXSEAQDDTCNDLPHNTGGRIF---VPPS 833
             + S++++   +   D                  +A+ +           + F   +   
Sbjct: 1464 VEISNNEE---VGISDPKDEDSKVPSKSKSSKNKKAKTEAKRKKRFRAIKKDFDRAILVK 1520

Query: 832  FKEHNFEVHFRSANEPHILLSQIAQKVAKNVYIKKLAKIDRCSVFGDTKTADIHTSGETK 653
             K   FEVHFR  NEPHILL+QIAQK A  VYI+   KID C V    K   I+   + K
Sbjct: 1521 AKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPK 1580

Query: 652  TPDIQTSADTTIPERQRSGDTKIPEIQTSGDSETPEINPIGIETSGVDFHALWDMQDDLD 473
              +        IP  ++    K+P +Q                T+GVDF A W MQD+LD
Sbjct: 1581 KRE-------NIPGEEKK---KLPALQ----------------TAGVDFTAFWKMQDELD 1614

Query: 472  IRLIESNDIHGILKTFGVEAARATIVKELSKVFDLYGIKTDFRHLSLIADFMTQSGKYRP 293
            +R + SN++H +L TFGVEAARATI+KE+  VF+ YG+K + RHLSLIADFMT SG YRP
Sbjct: 1615 VRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRP 1674

Query: 292  MSRH-GMADSISPFSKMSFETASTFILNAAYRGEVDNLESPSASICLGQPVKMGTGCFDL 116
            M+RH G+A+S+SPFSKM+FETAS FI+ AA  G  DNLES SA ICLG PVKMGTGCFDL
Sbjct: 1675 MNRHGGIAESVSPFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDL 1734

Query: 115  MQKVQV 98
            MQK+++
Sbjct: 1735 MQKIEI 1740


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1658 bits (4293), Expect = 0.0
 Identities = 939/1804 (52%), Positives = 1175/1804 (65%), Gaps = 48/1804 (2%)
 Frame = -1

Query: 5365 TESVDSVKFSFLTSEEVESYSFKQVTSVELLDNLDRPVPGGLYDPALGPLEDHTICKSCG 5186
            TE V++VKFSF T EEV  YSFK++TS  +LD++ RPVPGGLYDPALG ++++T C+SCG
Sbjct: 9    TEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQSCG 68

Query: 5185 QSSFFCTGHCGHIEFICPIFNPLLFDVLFNIVRKMCFSCHHFMDARDPVEKCASQAELIL 5006
            Q SF+C GHCGHI+ +  ++NPLLF++L N+++K CF CHHF  +   V+K  SQ ELI 
Sbjct: 69   QRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLELIS 128

Query: 5005 KGEIDAASNGDVVLQNDLSV---LDGNGVKDTSD-----------HLKGKIWTSLQYSRA 4868
            KG++  A N D +  ++ S     DG+ V  +S            HLK + WTSLQ   A
Sbjct: 129  KGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEA 188

Query: 4867 MSMLDDFMKIKKKKCTRCMFKSPKITQPTFGWIHM-DTPDSTIRRNVLREYTQSSIDEAE 4691
            MS++D+F+K+K + C  C  KSP++T+PTFGW HM    D+  R NV+R    S ++   
Sbjct: 189  MSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRG---SKLERP- 244

Query: 4690 QEFITGGAENANDSCTRGIETDDDLQSSGAVYDGTPNSSTKAFRDLGEGNVPSEFGKQKT 4511
                             G++TD+   SS A  DG  ++ TK     G    P EF KQK+
Sbjct: 245  ---------------LNGVDTDET-HSSIAPTDGIQDTVTKRLERKG-AQAPIEFIKQKS 287

Query: 4510 LSKGPLLPSEVKDHLKLLWDNETQLCSLICDIHRERLSMSEKKRSYSMFFIDVLLVPPVK 4331
               GPLLPSEV+D ++ LW+NE +LCS I DI +ERL  S  K  YSMFF++ +LVPP+K
Sbjct: 288  FFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIK 347

Query: 4330 FRPLTKGGDSVTHHPQTVLLSRVLQSNIDLCNAL--NNDRSQMENRSLVLQQSVNVLFGN 4157
            FRP +KG  SV  HPQTVLL +VLQ+NI L NA   N++RS++ +R + LQQS+NVLF  
Sbjct: 348  FRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLFDG 407

Query: 4156 KKSFGQ-RDNMGMGICQLLEKKEGLFRQKMMGKRVNYSCRSVISPDPYLAVNEIGIPPCF 3980
            K + GQ + + G GICQLLEKKEG+FRQKMMGKRVN++CRSVISPDPYLAVNEIGIPP F
Sbjct: 408  KTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYF 467

Query: 3979 ALKLTYPERVTDWNVKKLRNAILNGPDIHPGATEYSDQFSTRKLSNIGKMRTSVSKKFTT 3800
            AL+LTYPE+VT WNV KLR+AI+NGP+IHPGAT Y D+ ST KL+   KMR S+S+K  +
Sbjct: 468  ALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPS 527

Query: 3799 SRGDTSRGDVTKPGRSVEHEHEGKVVSRHLQDGDIVLVNRQPTLHKPGIMAHVVRVLNGE 3620
            SRG      V +PGRS ++E EGK+V RHLQDGDIVLVNRQPTLHKP IMAHVVRVL GE
Sbjct: 528  SRGV-----VAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE 582

Query: 3619 KTIRMHYANCSTYNADFDGDEMNVHFPQDEIARAEAFHIVNANNQYIIPTSGDTKRGLIQ 3440
            KT+RMHYANCSTYNADFDGDEMNVHFPQDEI+RAEA++IVNANNQYI+P+ GD  RGLIQ
Sbjct: 583  KTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQ 642

Query: 3439 DHIVSGVLLTKKDTFLSRDEYTHLLYSSGLFAAGRGSFVGKSGQKVSAIVSEDEIELLVP 3260
            DHIVS VLLTKKDTFL+R++Y  LLYSSGL ++G GSF+GK G+KVS + SEDE++ L+P
Sbjct: 643  DHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPLLP 701

Query: 3259 AILKPEPLWTGKQVITSLLNRMTKGEGLPPFTFEAKCTIDEDIWTSQCGD---------- 3110
            AI KPEPLW+GKQVIT++LN +T+G    PFT E    I  + + S+  +          
Sbjct: 702  AIWKPEPLWSGKQVITAVLNHITRGR--KPFTTEKDGKIPREYFGSEIDEKKSGKGKDPG 759

Query: 3109 --------------DVQFRILKNDFLNGVVDKAQFGKYGMVHTVQELYGSKTAGALLSGL 2972
                          + +  I KN+ + GV+DKAQF KYG+VH VQELYGS TAG LLS L
Sbjct: 760  SDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVL 819

Query: 2971 SRLFTVFLQLHGFTCGVDDLLLKQNIDIERRTKLKDANKIVESVYLKFVKGEDDQGKHSE 2792
            SRLFTVFLQ+HGFTCGVDDLL+  N DI R+ +L  +  I E V+ KF+      G +  
Sbjct: 820  SRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFI------GSNHG 873

Query: 2791 KIDLQSKPVNAKDENKERKELQVCIEKKVRDHGESTISLLDKMMSSAANVLTNAVNTIIF 2612
            KID    PV          +LQV +EK +  +GE+ I+ LD+MM +  N LT+ VN    
Sbjct: 874  KID----PV----------KLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVN---- 915

Query: 2611 PKKTKSLSEDKSNVESADKSKDKLAENLKGGFSKPFPKNCFSLMTISGAKGGQVNFXXXX 2432
                                KD L +    G  KPFPKNC SLMT +GAKG  VNF    
Sbjct: 916  --------------------KDLLLK----GLVKPFPKNCLSLMTTTGAKGSTVNFSQIS 951

Query: 2431 XXXXXXXLEGKRVPLMISGKTLPCFPPWDPALRAGGFITDCFLTGLRPQEYYFHCMAGRE 2252
                   LEGKRVP M+SGKTLPCFPPWD A RAGGFI+D FLTGL PQEYYFHCMAGRE
Sbjct: 952  SFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGRE 1011

Query: 2251 GLVDTAVKTSRSGYLQRCLVKNLECLMVGYDRTVRDADGSIVQFCYGEDGVDVHKTSFMA 2072
            GLVDTAVKTSRSGYLQRCL+KNLECL V YD TVRD+DGSIVQF YG+DGVDVH+TSF+ 
Sbjct: 1012 GLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFIT 1071

Query: 2071 KFDTLTSNHSVVLGRLMAQCKDDLEKSKDDHLTFDKCIEKLKEDHLTFDNYIEKLPLKLV 1892
            +F+ L  N  VV                          EK  +D   F+ YI+KLP +L 
Sbjct: 1072 EFEALAVNEEVV-------------------------CEKFGQDG-KFNGYIQKLPKEL- 1104

Query: 1891 EVIYXXXXXXXXXXXXXEQHSSLVEKSRKLLPKEEMMKLMILKYLSSLAQPGEPVGVIAA 1712
                              +     +  +K   +++ + L+  KY+SSLAQPGEPVGV+AA
Sbjct: 1105 ------RKKTKKFIEGFMEERQDFDNMKK---QKDFVNLVKQKYISSLAQPGEPVGVLAA 1155

Query: 1711 QSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASERILTPIMSCPLRKGKKGED 1532
            QSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM A+  I TPIM+CPL+ G+  +D
Sbjct: 1156 QSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDD 1215

Query: 1531 AERLARSLRKVAVADVIKSMQVSVVPFFVQKHQASAVYKLKVELYPIDMYPKHSNIDLDD 1352
            AERLA  L+KV VAD+ +SM+VS+VPF VQ HQ  ++YKLK++LY   +YP H+ I L+D
Sbjct: 1216 AERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLED 1275

Query: 1351 CEKTLKSIFVPELVRAIDSHVAMLSKIAGIVNIVQKGESDLSEGTDE-ADPCNKVNRKGX 1175
            CE+TL+++FV EL  AI +H+ +LSKI+GI N +    S  S+ TDE A         G 
Sbjct: 1276 CEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGDGLAGGNGD 1335

Query: 1174 XXXXXXXXXXXXXXXXDAQKGKLQNSDEKEYEDGMGSEYIEGEAS-GFESEIDQVELEDD 998
                            DAQK K Q SDE +Y D  G E  EGE S G   EID VE E +
Sbjct: 1336 EDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGDSEG-EPDEGEPSAGLTEEIDLVEDEVE 1394

Query: 997  NSSDDKAPTIETDDXXXXXXXXXXXXXXXXXSEAQDDTCNDLPHNTGGRIF---VPPSFK 827
             S++++   +   D                  +A+ +           + F   +    K
Sbjct: 1395 ISNNEE---VGISDPKDEDSKVPSKSKSSKNKKAKTEAKRKKRFRAIKKDFDRAILVKAK 1451

Query: 826  EHNFEVHFRSANEPHILLSQIAQKVAKNVYIKKLAKIDRCSVFGDTKTADIHTSGETKTP 647
               FEVHFR  NEPHILL+QIAQK A  VYI+   KID C V    K   I+   + K  
Sbjct: 1452 GTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKR 1511

Query: 646  DIQTSADTTIPERQRSGDTKIPEIQTSGDSETPEINPIGIETSGVDFHALWDMQDDLDIR 467
            +        IP  ++    K+P +Q                T+GVDF A W MQD+LD+R
Sbjct: 1512 E-------NIPGEEKK---KLPALQ----------------TAGVDFTAFWKMQDELDVR 1545

Query: 466  LIESNDIHGILKTFGVEAARATIVKELSKVFDLYGIKTDFRHLSLIADFMTQSGKYRPMS 287
             + SN++H +L TFGVEAARATI+KE+  VF+ YG+K + RHLSLIADFMT SG YRPM+
Sbjct: 1546 YVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMN 1605

Query: 286  RH-GMADSISPFSKMSFETASTFILNAAYRGEVDNLESPSASICLGQPVKMGTGCFDLMQ 110
            RH G+A+S+SPFSKM+FETAS FI+ AA  G  DNLES SA ICLG PVKMGTGCFDLMQ
Sbjct: 1606 RHGGIAESVSPFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQ 1665

Query: 109  KVQV 98
            K+++
Sbjct: 1666 KIEI 1669


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1580 bits (4092), Expect = 0.0
 Identities = 903/1815 (49%), Positives = 1147/1815 (63%), Gaps = 58/1815 (3%)
 Frame = -1

Query: 5368 ATESVDSVKFSFLTSEEVESYSFKQVTSVELLDNLDRPVPGGLYDPALGPLEDHTICKSC 5189
            ATES+DS+ FSFLT EEV  +SF ++T+  LLD ++RPVPGGLYDPALGPL + TICK+C
Sbjct: 11   ATESIDSISFSFLTDEEVRKHSFVKITNPRLLDLVERPVPGGLYDPALGPLSERTICKTC 70

Query: 5188 GQSSFFCTGHCGHIEFICPIFNPLLFDVLFNIVRKMCFSCHHFMDARDPVEKCASQAELI 5009
            GQ S  C GHCGHI+ + P++NPLLF+ L  ++++ CF C HF   R  VEKC  Q ELI
Sbjct: 71   GQRSTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFLCFHFRMQRGQVEKCIKQLELI 130

Query: 5008 LKGEIDAASNGDVVL--------QNDLSVLD----GNGVK-DTSDHLKGKIWTSLQYSRA 4868
            +KG+I  A   + V         ++DLS        +GV+ +  +H + + WTSLQ++ A
Sbjct: 131  VKGDIVGAKRLESVSPSEALYPEESDLSHESCPTIHSGVQCNDGEHTRQQGWTSLQFTEA 190

Query: 4867 MSMLDDFMKIKKKKCTRCMFKSPKITQPTFGWIHMD-TPDSTIRRNVLREYTQSSIDEAE 4691
            MS+L++F+K K KKC  C   +P IT+PTFGW H     D++IR NV+  +    +  +E
Sbjct: 191  MSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHTSGMSDASIRANVITGHQLGGLLGSE 250

Query: 4690 QEFITGGAENANDSCTRGIETDDDLQSSGAVYDGTPNSSTKAFRDLGEGNVPSEFGKQKT 4511
             E               G    +D    G  + GT     K  +++       EF +QK+
Sbjct: 251  IE---------------GTTDVEDAAEPGDQHSGTKKHKKKERKEV------LEFTRQKS 289

Query: 4510 LSKGPLLPSEVKDHLKLLWDNETQLCSLICDIHRERLSMSEKKRSYSMFFIDVLLVPPVK 4331
                 LLPSEVK+ L+LLW NE ++CS I D+ ++     ++K   +MFF++ +LVPP+K
Sbjct: 290  TFSKQLLPSEVKEKLELLWKNEARICSFISDLQQQEFG--KRKAGPAMFFLETILVPPIK 347

Query: 4330 FRPLTKGGDSVTHHPQTVLLSRVLQSNIDLCNA-LNNDRSQMENRSLVLQQSVNVLFGNK 4154
            FRP TKGGDSV  HPQTVLLS+VLQSNI L +A +N + S++  R L LQQS+N LF +K
Sbjct: 348  FRPPTKGGDSVMEHPQTVLLSKVLQSNISLGDAHINKEHSKIVRRWLDLQQSINTLFDSK 407

Query: 4153 --KSFGQRDNMGMGICQLLEKKEGLFRQKMMGKRVNYSCRSVISPDPYLAVNEIGIPPCF 3980
              K  GQR+    GICQLLEKKEGLFRQKMMGKRVNY+CRSVISPDPY+ VNEIGIPPCF
Sbjct: 408  TAKGPGQREG-APGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPYIGVNEIGIPPCF 466

Query: 3979 ALKLTYPERVTDWNVKKLRNAILNGPDIHPGATEYSDQFSTRKLSNIGKMRTSVSKKFTT 3800
            A+KLTYPERVT WN+ KLRNA++NG + HPGAT Y D+ S  KL    K R S+S+K  +
Sbjct: 467  AVKLTYPERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKLPPARKARISISRKLPS 526

Query: 3799 SRGDTSRGDVTKPGRSVEHEHEGKVVSRHLQDGDIVLVNRQPTLHKPGIMAHVVRVLNGE 3620
            SRG      VT+ G+  E E EGK+V RHLQDGD+VLVNRQPTLHKP IMAHVVRVL GE
Sbjct: 527  SRGA-----VTQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 581

Query: 3619 KTIRMHYANCS-TYNADFDGDEMNVHFPQDEIARAEAFHIVNANNQYIIPTSGDTKRGLI 3443
            KT+RMHYANCS TYNADFDGDEMNVHFPQDE++RAEA++IVNANNQ++ P++G+  RGLI
Sbjct: 582  KTLRMHYANCSITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEPLRGLI 641

Query: 3442 QDHIVSGVLLTKKDTFLSRDEYTHLLYSSGLFAAGRGSFVGKSGQKVSAIVSEDEIELLV 3263
            QDHIVS VLLTKKDTFLS+DE+  LLYSSG+   G  SF G+ GQKV    SEDEI+ L 
Sbjct: 642  QDHIVSAVLLTKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKVLWSRSEDEIQTLP 701

Query: 3262 PAILKPEPLWTGKQVITSLLNRMTKGEGLPPFTFEAKCTIDEDIWTSQCGDDV------- 3104
            PAI KP+PLWTGKQVIT++LN +T     PPFT E    I  + + S+  +D        
Sbjct: 702  PAIWKPKPLWTGKQVITAILNHITSDH--PPFTVEKDAKIPSNFFKSRANEDKPCQEEKS 759

Query: 3103 -------------QFRILKNDFLNGVVDKAQFGKYGMVHTVQELYGSKTAGALLSGLSRL 2963
                         +  + KN+ + GV+DK QFG+YG+VHTV EL GS TAG LLS LSRL
Sbjct: 760  DKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHTVHELLGSHTAGILLSVLSRL 819

Query: 2962 FTVFLQLHGFTCGVDDLLLKQNIDIERRTKLKDANKIVESVYLKFVKGEDDQGKHSEKID 2783
            FT +LQ+HGFTCGVDDLL+  N D ER+ +L+   K  E+V+  F+      G   EKI 
Sbjct: 820  FTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEAVHRNFI------GIKDEKIK 873

Query: 2782 LQSKPVNAKDENKERKELQVCIEKKVRDHGESTISLLDKMMSSAANVLTNAVNTIIFPKK 2603
            +   PV           +Q+ IEK +R  G+S ++ LD+ MS+  N              
Sbjct: 874  ID--PV----------AMQLNIEKTIRSDGDSALAYLDRQMSNELN-------------- 907

Query: 2602 TKSLSEDKSNVESADKSKDKLAENLKGGFSKPFPKNCFSLMTISGAKGGQVNFXXXXXXX 2423
            TK+ S   SN+             L  G  KP  KNC SLMT SGAKG +VNF       
Sbjct: 908  TKTSSGVISNL-------------LSDGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFL 954

Query: 2422 XXXXLEGKRVPLMISGKTLPCFPPWDPALRAGGFITDCFLTGLRPQEYYFHCMAGREGLV 2243
                LEGKRVP M+SGKTLPCF PWD A R+GG+ITD FLTGLRPQEYYFHCMAGREGLV
Sbjct: 955  GQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDRFLTGLRPQEYYFHCMAGREGLV 1014

Query: 2242 DTAVKTSRSGYLQRCLVKNLECLMVGYDRTVRDADGSIVQFCYGEDGVDVHKTSFMAKFD 2063
            DTAVKTSRSGYLQRCL+KNLECL +GYD TVRDADGS+VQF YGEDGVDVH+TSF+AKF 
Sbjct: 1015 DTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVVQFYYGEDGVDVHQTSFIAKFK 1074

Query: 2062 TLTSNHSVVLGRLMAQCKDDLEKSKDDHLTFDKCIEKLKEDHLTFDNYIEKLPLKLVEVI 1883
             L  N  ++  R   Q                            F++YI +LP  L E  
Sbjct: 1075 ELALNQDMIYKRSGGQLG-------------------------AFNSYISELPEALKE-- 1107

Query: 1882 YXXXXXXXXXXXXXEQHSSLVEKSRKLLPKEEMMKLMILKYLSSLAQPGEPVGVIAAQSV 1703
                          +  S +   +  L+ +E++  LM  K+L SLAQPGEPVGV+AAQSV
Sbjct: 1108 --------KADRFLDDFSIMGRIASNLVKREDLYNLMKQKFLLSLAQPGEPVGVLAAQSV 1159

Query: 1702 GEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASERILTPIMSCPLRKGKKGEDAER 1523
            GEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM AS  I TPIM+CPL++G+  EDA+ 
Sbjct: 1160 GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIKTPIMTCPLQEGRTNEDADH 1219

Query: 1522 LARSLRKVAVADVIKSMQVSVVPFFVQKHQASAVYKLKVELYPIDMYPKHSNIDLDDCEK 1343
            LA  LRKV VAD+++SM+VSVVPF +Q      +YKLK++LY    YP+++NI ++D E+
Sbjct: 1220 LADKLRKVTVADIVESMEVSVVPFAIQDGGVCRIYKLKMKLYRPAHYPQYANISVEDWEE 1279

Query: 1342 TLKSIFVPELVRAIDSHVAMLSKIAGIVNIVQKGESDLSEGTDEADPCNKVNR-KGXXXX 1166
            TL+ +F+ EL  AI +H+ +LS+I+GI + + +  S  S   DE    +  +R +     
Sbjct: 1280 TLEVVFLRELEDAIQNHMFLLSRISGIKDFLPESRSRASGEADEDVAGDMSHREERDDDN 1339

Query: 1165 XXXXXXXXXXXXXDAQKGKLQNSDEKEYEDGMGSEYIEGEA------SGFESEIDQVELE 1004
                         DAQK KLQ +DE +Y+DG   E  EGE+      SGFESEIDQ + E
Sbjct: 1340 DDDDGERADDLGLDAQKRKLQATDEMDYDDGFEEELNEGESTASEEESGFESEIDQGDNE 1399

Query: 1003 DDNSSDDKAPTIETDDXXXXXXXXXXXXXXXXXSEAQDDTCND------------LPHNT 860
             + S+D       ++                  S +  +   D            +  + 
Sbjct: 1400 TEISNDVMLDNEASETLPLRKPSKPKSKKKAAESPSHGEKSKDKKKKPKAKRKSRISKDF 1459

Query: 859  GGRIFVPPSFKEHNFEVHFRSANEPHILLSQIAQKVAKNVYIKKLAKIDRCSVFGDTKTA 680
               IFV    ++ +FEVHF+  NEPHILL++IAQK AK VYI+   KI++C V  D K +
Sbjct: 1460 DRAIFV--EARKMHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGKIEQCRV-TDCKES 1516

Query: 679  DIHTSGETKTPDIQTSADTTIPERQRSGDTKIPEIQTSGDSETPEINPIGIETSGVDFHA 500
             +   G+     +    D            K+P                 +  +GVDF+ 
Sbjct: 1517 QVIYYGKDPKERVDLKPDV---------KEKVP----------------ALHATGVDFNT 1551

Query: 499  LWDMQDDLDIRLIESNDIHGILKTFGVEAARATIVKELSKVFDLYGIKTDFRHLSLIADF 320
             W MQD LD+R I SN+IH +LKT+GVEAAR TI++E++ VF  YGI    RHLSLIADF
Sbjct: 1552 FWKMQDHLDVRYIYSNNIHAMLKTYGVEAARETIIREINHVFKSYGIAVSNRHLSLIADF 1611

Query: 319  MTQSGKYRPMSR-HGMADSISPFSKMSFETASTFILNAAYRGEVDNLESPSASICLGQPV 143
            MT +G YRPMSR  G+A+SISPFSKMSFETAS FI+ AA  GE+DNLE+PSA ICLG PV
Sbjct: 1612 MTHTGGYRPMSRMGGIAESISPFSKMSFETASKFIVEAALHGEIDNLETPSARICLGLPV 1671

Query: 142  KMGTGCFDLMQKVQV 98
            KMGTG FDLMQK+++
Sbjct: 1672 KMGTGSFDLMQKLEI 1686


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 1517 bits (3928), Expect = 0.0
 Identities = 879/1807 (48%), Positives = 1121/1807 (62%), Gaps = 39/1807 (2%)
 Frame = -1

Query: 5401 LSLSIIMTMQLATESVDSVKFSFLTSEEVESYSFKQVTSVELLDNLDRPVPGGLYDPALG 5222
            LS +++  M  A+ESV  V FSF+T+EEV   S  +VT+  LLD + RPV GGLYDPA+G
Sbjct: 4    LSRTLLFPMG-ASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMG 62

Query: 5221 PLEDHTICKSCGQSSFFCTGHCGHIEFICPIFNPLLFDVLFNIVRKMCFSCHHFMDARDP 5042
             L++ T+CKSCGQ  F+C GHCGHI+ + P++NPLLF +L N +R  CFSCHHF      
Sbjct: 63   SLDETTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESM 122

Query: 5041 VEKCASQAELILKGEIDAASNGDVVLQNDLSVLDGNGVKDTSDHLKGK--IWTSLQYSRA 4868
            VE C +  ELIL GEI  A   +    N  S    +    T +   G+   WTSLQ+S A
Sbjct: 123  VENCKTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEA 182

Query: 4867 MSMLDDFMKIKKKKCTRCMFKSPKITQPTFGWIHMDTPDSTIRRNVLREYTQSSIDEAEQ 4688
            +S++  F+K K+  C  C  KSPKIT+PTFGW HM       +R        ++I  ++ 
Sbjct: 183  ISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKR-------ANAIRRSKP 235

Query: 4687 EFITGGAENANDSCTRGIETDDDLQSSGAVYDGTPNSSTKAFRDLGEGNVPSEFGKQKTL 4508
              ++ GAE                  S    + T  ++ + F D     V  E   QK  
Sbjct: 236  VSVSSGAEGV----------------SSLEEETTTEATVEDFED-----VSPEVFMQKNF 274

Query: 4507 SKGPLLPSEVKDHLKLLWDNETQLCSLICDIHRERLSMSEKKRSYSMFFIDVLLVPPVKF 4328
            S G LLPSEVKD LK LW NE  LCS I DI ++       K  +SMFF++ +LVPP+KF
Sbjct: 275  SSGHLLPSEVKDILKRLWKNEALLCSFISDISQQGHG---NKAGHSMFFLESVLVPPIKF 331

Query: 4327 RPLTKGGDSVTHHPQTVLLSRVLQSNIDLCN--ALNNDRSQMENRSLVLQQSVNVLFGNK 4154
            RP  KGGDSV  HPQTVLL++VLQSNI L N  A  ++ S++    + LQQS+N+LF +K
Sbjct: 332  RPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQSINILFDSK 391

Query: 4153 KSFGQ-RDNMGMGICQLLEKKEGLFRQKMMGKRVNYSCRSVISPDPYLAVNEIGIPPCFA 3977
             + G  +++  +GICQLLEKKEG+FRQKMMGKRVN++CRSVISPDPYLAVNEIGIPP FA
Sbjct: 392  SAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFA 451

Query: 3976 LKLTYPERVTDWNVKKLRNAILNGPDIHPGATEYSDQFSTRKLS--NIGKMRTSVSKKFT 3803
            L+LTYPERVT WNV+KLRNAI+NGP+ HPGAT Y D+ +T KL+     K R S+S+K  
Sbjct: 452  LRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLP 511

Query: 3802 TSRGDTSRGDVTKPGRSVEHEHEGKVVSRHLQDGDIVLVNRQPTLHKPGIMAHVVRVLNG 3623
            +SRG      V       ++E EGK+V+RHLQDGDIVLVNRQPTLHKP IMAHVVRVL G
Sbjct: 512  SSRG------VVVDQGCDDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 565

Query: 3622 EKTIRMHYANCS-TYNADFDGDEMNVHFPQDEIARAEAFHIVNANNQYIIPTSGDTKRGL 3446
            EKTIRMHYANCS TYNADFDGDEMNVHFPQDEI+RAEA++IVNANNQY+ PTSG+  R L
Sbjct: 566  EKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRAL 625

Query: 3445 IQDHIVSGVLLTKKDTFLSRDEYTHLLYSSGLFAAGRGSFVGKSGQKVSAIVSEDEIELL 3266
            IQDHI+S VLLTKKDTFL+ DE++ LLYSSG+  +   +   K GQK+  +  + E+  +
Sbjct: 626  IQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPV 685

Query: 3265 VPAILKPEPLWTGKQVITSLLNRMTKGEGLPPFTFEAKCTIDEDIWTSQCG--------- 3113
            +PA+ KPEPLWTGKQV+T+LL+ +T+G   PPF  E    I         G         
Sbjct: 686  LPAVWKPEPLWTGKQVVTALLDHITQGS--PPFFVEKDVKIPRGFLILDEGNSKKKEHTK 743

Query: 3112 ---------DDVQFRILKNDFLNGVVDKAQFGKYGMVHTVQELYGSKTAGALLSGLSRLF 2960
                     DD    I KN+ + GV+DKAQFG YG+VHTVQELYGS TAG LLS +SRLF
Sbjct: 744  VDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLF 803

Query: 2959 TVFLQLHGFTCGVDDLLLKQNIDIERRTKLKDANKIVESVYLKFVKGEDDQGKHSEKIDL 2780
            TVFLQ HGFTCGVDDLLL + +D ER  +L+   KI E V+L F+K +D      EK+D 
Sbjct: 804  TVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKD-----GEKLDP 858

Query: 2779 QSKPVNAKDENKERKELQVCIEKKVRDHGESTISLLDKMMSSAANVLTNAVNTIIFPKKT 2600
             +              LQ+ IEK +  +GE+ ++ LD+ M+S  N  T     +      
Sbjct: 859  MT--------------LQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVL------ 898

Query: 2599 KSLSEDKSNVESADKSKDKLAENLKGGFSKPFPKNCFSLMTISGAKGGQVNFXXXXXXXX 2420
                            KD L+E    G  KP  KNC SLMT SGAKGG  NF        
Sbjct: 899  ----------------KDLLSE----GLLKPSVKNCISLMTTSGAKGGTANFQQISSHLG 938

Query: 2419 XXXLEGKRVPLMISGKTLPCFPPWDPALRAGGFITDCFLTGLRPQEYYFHCMAGREGLVD 2240
               LEGKRVP M+SGKTLPCFPPWD A RAGGFI D FLTGLRPQEYYFHCMAGREGLVD
Sbjct: 939  QQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVD 998

Query: 2239 TAVKTSRSGYLQRCLVKNLECLMVGYDRTVRDADGSIVQFCYGEDGVDVHKTSFMAKFDT 2060
            TAVKTSRSGYLQRCL+KNLE L + YD TVRDADGS++QF YGEDGVDVHKT+F+ KF+ 
Sbjct: 999  TAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEA 1058

Query: 2059 LTSNHSVVLGRLMAQCKDDLEKSKDDHLTFDKCIEKLKEDHLTFDNYIEKLPLKLVEVIY 1880
            L +N  ++               ++ H    K           ++ +I +LP  L E   
Sbjct: 1059 LAANQDMLY--------------ENSHHQLGK-----------YNVFINELPSALRE--- 1090

Query: 1879 XXXXXXXXXXXXXEQHSSLVEKSRKLLPKEEMMKLMILKYLSSLAQPGEPVGVIAAQSVG 1700
                           +S   +K   L+ KE+ ++L+  KYLSSLAQPGEPVGV+AAQS+G
Sbjct: 1091 ---------KGEFIYNSLSKDKVPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIG 1141

Query: 1699 EPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASERILTPIMSCPLRKGKKGEDAERL 1520
            EPSTQMTLNTFHHAG+ + NVTLGIPRLQEILM AS+ I TPIM+CPL++G   + A+ L
Sbjct: 1142 EPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGL 1201

Query: 1519 ARSLRKVAVADVIKSMQVSVVPFFVQKHQASAVYKLKVELYPIDMYPKHSNIDLDDCEKT 1340
            A  L+K+ VAD+I+SM V+VVPF  +K +  ++YKL+++ YP++   +H +I  +D E T
Sbjct: 1202 ANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENT 1261

Query: 1339 LKSIFVPELVRAIDSHVAMLSKIAGIVNIVQKGESDLSEGTDEADPCNKVNRKGXXXXXX 1160
            L+++F+ EL   I+  + +LSKI GI   V   +S  S   DE     +   +       
Sbjct: 1262 LETVFLEELEGLIEREMVLLSKINGIKXFVPDSQSKGSSEGDEVSSSRQ--EEMDDDDEG 1319

Query: 1159 XXXXXXXXXXXDAQKGKLQNSDEKEYEDGMGSEYIEGEAS-GFESEIDQ----------- 1016
                       D +K KLQ +DE +YED    +    E+S GFESE+DQ           
Sbjct: 1320 NDLDVAEDLGSDXEKQKLQANDEMDYEDDSEDDLNAKESSTGFESEVDQGDEAEITNNDM 1379

Query: 1015 VELEDDNSSDDKAPTIETDDXXXXXXXXXXXXXXXXXSEAQDDTCNDLPHNTGGRIFVPP 836
            +E+  D++S+++   ++                     E +      +   T   IFV  
Sbjct: 1380 IEIVKDSASENQPEIVDVS------KSMSKEKTTETSKEKKKVKSELVRKETDRSIFV-- 1431

Query: 835  SFKEHNFEVHFRSANEPHILLSQIAQKVAKNVYIKKLAKIDRCSVFGDTKTADIHTSGET 656
              KE++FEVHF+  NEPH LLSQI Q+ A+ V I++  KI +C      +   I+     
Sbjct: 1432 EAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNNL 1491

Query: 655  KTPDIQTSADTTIPERQRSGDTKIPEIQTSGDSETPEINPIGIETSGVDFHALWDMQDDL 476
            K            PE +     KIP +Q                TSGVDF  LW+MQD+L
Sbjct: 1492 K------ERKNLKPEEKE----KIPALQ----------------TSGVDFKTLWEMQDEL 1525

Query: 475  DIRLIESNDIHGILKTFGVEAARATIVKELSKVFDLYGIKTDFRHLSLIADFMTQSGKYR 296
            D+R I SNDIH +L+T+GVEAARATI++E+  +F  YGI  + RHLSL+AD+MT SG YR
Sbjct: 1526 DVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYR 1585

Query: 295  PMSR-HGMADSISPFSKMSFETASTFILNAAYRGEVDNLESPSASICLGQPVKMGTGCFD 119
            PMSR  G++DSISPFS+M+FETA  FI+ AA  GEVDNLE+PS+ ICLG PVKMGTG FD
Sbjct: 1586 PMSRLGGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFD 1645

Query: 118  LMQKVQV 98
            LMQK++V
Sbjct: 1646 LMQKIEV 1652


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 1514 bits (3920), Expect = 0.0
 Identities = 876/1805 (48%), Positives = 1120/1805 (62%), Gaps = 44/1805 (2%)
 Frame = -1

Query: 5380 TMQLATESVDSVKFSFLTSEEVESYSFKQVTSVELLDNLDRPVPGGLYDPALGPLEDHTI 5201
            T + A+ESV  V FSF+T+EEV   S  +VT+  LLD + RPV GGLYDPA+G L++ T+
Sbjct: 4    TTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTL 63

Query: 5200 CKSCGQSSFFCTGHCGHIEFICPIFNPLLFDVLFNIVRKMCFSCHHFMDARDPVEKCASQ 5021
            CKSCGQ  F+C GHCGHI+ + P++NPLLF +L N +R  CFSCHHF      VE C + 
Sbjct: 64   CKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTL 123

Query: 5020 AELILKGEIDAASNGDVVLQNDLSVLDGNGVKDTSDHLKGK--IWTSLQYSRAMSMLDDF 4847
             ELIL GEI  A   +    N  S    +    T +   G+   WTSLQ+S A+S++  F
Sbjct: 124  LELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVVTKF 183

Query: 4846 MKIKKKKCTRCMFKSPKITQPTFGWIHMDTPDSTIRRNVLREYTQSSIDEAEQEFITGGA 4667
            +K K+  C  C  KSPKIT+PTFGW HM       +R        ++I  ++   ++ GA
Sbjct: 184  LKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKR-------ANAIRRSKPVSVSSGA 236

Query: 4666 ENANDSCTRGIETDDDLQSSGAVYDGTPNSSTKAFRDLGEGNVPSEFGKQKTLSKGPLLP 4487
            E                  S    + T  ++ + F D     V  E   QK  S G LLP
Sbjct: 237  EGV----------------SSLEEETTTEATVEDFED-----VSPEVFMQKNFSSGHLLP 275

Query: 4486 SEVKDHLKLLWDNETQLCSLICDIHRERLSMSEKKRSYSMFFIDVLLVPPVKFRPLTKGG 4307
            SEVKD LK LW NE  LCS I DI ++       K  +SMFF++ +LVPP+KFRP  KGG
Sbjct: 276  SEVKDILKRLWKNEALLCSFISDISQQGHG---NKAGHSMFFLESVLVPPIKFRPPAKGG 332

Query: 4306 DSVTHHPQTVLLSRVLQSNIDLCN--ALNNDRSQMENRSLVLQQSVNVLFGNKKSFGQ-R 4136
            DSV  HPQTVLL++VLQSNI L N  A  ++ S++    + LQQS+N+LF +K + G  +
Sbjct: 333  DSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQSINILFDSKSAAGPGK 392

Query: 4135 DNMGMGICQLLEKKEGLFRQKMMGKRVNYSCRSVISPDPYLAVNEIGIPPCFALKLTYPE 3956
            ++  +GICQLLEKKEG+FRQKMMGKRVN++CRSVISPDPYLAVNEIGIPP FAL+LTYPE
Sbjct: 393  NDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPE 452

Query: 3955 RVTDWNVKKLRNAILNGPDIHPGATEYSDQFSTRKLS--NIGKMRTSVSKKFTTSRGDTS 3782
            RVT WNV+KLRNAI+NGP+ HPGAT Y D+ +T KL+     K R S+S+K  +SRG   
Sbjct: 453  RVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRG--- 509

Query: 3781 RGDVTKPGRSVEHEHEGKVVSRHLQDGDIVLVNRQPTLHKPGIMAHVVRVLNGEKTIRMH 3602
               V       ++E EGK+V+RHLQDGDIVLVNRQPTLHKP IMAHVVRVL GEKTIRMH
Sbjct: 510  ---VVVDQGCDDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMH 566

Query: 3601 YANCS-TYNADFDGDEMNVHFPQDEIARAEAFHIVNANNQYIIPTSGDTKRGLIQDHIVS 3425
            YANCS TYNADFDGDEMNVHFPQDEI+RAEA++IVNANNQY+ PTSG+  R LIQDHI+S
Sbjct: 567  YANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIIS 626

Query: 3424 GVLLTKKDTFLSRDEYTHLLYSSGLFAAGRGSFVGKSGQKVSAIVSEDEIELLVPAILKP 3245
             VLLTKKDTFL+ DE++ LLYSSG+  +   +   K GQK+  +  + E+  ++PA+ KP
Sbjct: 627  AVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKP 686

Query: 3244 EPLWTGKQVITSLLNRMTKGEGLPPFTFEAKCTIDE---------------------DIW 3128
            EPLWTGKQV+T+LL+ +T+G   PPF  E    I                       D  
Sbjct: 687  EPLWTGKQVVTALLDHITQGS--PPFFVEKDVKIPRGFFKCRDMGNNSSKKKEHTKVDKL 744

Query: 3127 TSQCGDDVQFRILKNDFLNGVVDKAQFGKYGMVHTVQELYGSKTAGALLSGLSRLFTVFL 2948
             +   DD    I KN+ + GV+DKAQFG YG+VHTVQELYGS TAG LLS +SRLFTVFL
Sbjct: 745  KAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFL 804

Query: 2947 QLHGFTCGVDDLLLKQNIDIERRTKLKDANKIVESVYLKFVKGEDDQGKHSEKIDLQSKP 2768
            Q HGFTCGVDDLLL + +D ER  +L+   KI E V+L F+K +D      EK+D  +  
Sbjct: 805  QTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKD-----GEKLDPMT-- 857

Query: 2767 VNAKDENKERKELQVCIEKKVRDHGESTISLLDKMMSSAANVLTNAVNTIIFPKKTKSLS 2588
                        LQ+ IEK +  +GE+ ++ LD+ M+S  N  T     +          
Sbjct: 858  ------------LQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVL---------- 895

Query: 2587 EDKSNVESADKSKDKLAENLKGGFSKPFPKNCFSLMTISGAKGGQVNFXXXXXXXXXXXL 2408
                        KD L+E    G  KP  KNC SLMT SGAKGG  NF           L
Sbjct: 896  ------------KDLLSE----GLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQL 939

Query: 2407 EGKRVPLMISGKTLPCFPPWDPALRAGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVK 2228
            EGKRVP M+SGKTLPCFPPWD A RAGGFI D FLTGLRPQEYYFHCMAGREGLVDTAVK
Sbjct: 940  EGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVK 999

Query: 2227 TSRSGYLQRCLVKNLECLMVGYDRTVRDADGSIVQFCYGEDGVDVHKTSFMAKFDTLTSN 2048
            TSRSGYLQRCL+KNLE L + YD TVRDADGS++QF YGEDGVDVHKT+F+ KF+ L +N
Sbjct: 1000 TSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAAN 1059

Query: 2047 HSVVLGRLMAQCKDDLEKSKDDHLTFDKCIEKLKEDHLTFDNYIEKLPLKLVEVIYXXXX 1868
              ++               ++ H    K           ++ +I +LP  L E       
Sbjct: 1060 QDMLY--------------ENSHHQLGK-----------YNVFINELPSALRE------- 1087

Query: 1867 XXXXXXXXXEQHSSLVEKSRKLLPKEEMMKLMILKYLSSLAQPGEPVGVIAAQSVGEPST 1688
                       +S   +K   L+ KE+ ++L+  KYLSSLAQPGEPVGV+AAQS+GEPST
Sbjct: 1088 -----KGEFIYNSLSKDKVPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPST 1142

Query: 1687 QMTLNTFHHAGQKDSNVTLGIPRLQEILMRASERILTPIMSCPLRKGKKGEDAERLARSL 1508
            QMTLNTFHH G+ + NVTLGI RLQEILM AS+ I TPIM+CPL++G   + A+ LA  L
Sbjct: 1143 QMTLNTFHHVGRGEMNVTLGILRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKL 1202

Query: 1507 RKVAVADVIKSMQVSVVPFFVQKHQASAVYKLKVELYPIDMYPKHSNIDLDDCEKTLKSI 1328
            +K+ VAD+I+SM V+VVPF  +K +  ++YKL+++ YP++   +H +I  +D E TL+++
Sbjct: 1203 KKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETV 1262

Query: 1327 FVPELVRAIDSHVAMLSKIAGIVNIVQKGESDLSEGTDEADPCNKVNRKGXXXXXXXXXX 1148
            F+ EL   I+  + +LSKI GI N V   +   S+G+ E D  +   +K           
Sbjct: 1263 FLEELEGLIEREMVLLSKINGIKNFVPDSQ---SKGSSEGDEVSSSRQKENDDDDDEGND 1319

Query: 1147 XXXXXXXDA--QKGKLQNSDEKEYEDGMGSEYIEGEAS-GFESEIDQ-----------VE 1010
                    +  +K KLQ +DE +YED    +    E+S GFESE+DQ           +E
Sbjct: 1320 LDVAEDLGSDMKKQKLQANDEMDYEDDSEDDLNAKESSTGFESEVDQGDEAEITNNDMIE 1379

Query: 1009 LEDDNSSDDKAPTIETDDXXXXXXXXXXXXXXXXXSEAQDDTCNDLPHNTGGRIFVPPSF 830
            +  D++S+++   ++                     E +      +   T   IFV    
Sbjct: 1380 IVKDSASENQPEIVDVS------KSMSKEKTTETSKEKKKVKSELVRKETDRSIFV--EA 1431

Query: 829  KEHNFEVHFRSANEPHILLSQIAQKVAKNVYIKKLAKIDRCSVFGDTKTADIHTSGETKT 650
            KE++FEVHF+  NEPH LLSQI Q+ A+ V I++  KI +C      +   I+     K 
Sbjct: 1432 KENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNNLK- 1490

Query: 649  PDIQTSADTTIPERQRSGDTKIPEIQTSGDSETPEINPIGIETSGVDFHALWDMQDDLDI 470
                       PE +     KIP +Q                TSGVDF  LW+MQD+LD+
Sbjct: 1491 -----ERKNLKPEEKE----KIPALQ----------------TSGVDFKTLWEMQDELDV 1525

Query: 469  RLIESNDIHGILKTFGVEAARATIVKELSKVFDLYGIKTDFRHLSLIADFMTQSGKYRPM 290
            R I SNDIH +L+T+GVEAARATI++E+  +F  YGI  + RHLSL+AD+MT SG YRPM
Sbjct: 1526 RYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPM 1585

Query: 289  SR-HGMADSISPFSKMSFETASTFILNAAYRGEVDNLESPSASICLGQPVKMGTGCFDLM 113
            SR  G++DSISPFS+M+FETA  FI+ AA  GEVDNLE+PS+ ICLG PVKMGTG FDLM
Sbjct: 1586 SRLGGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLM 1645

Query: 112  QKVQV 98
            QK++V
Sbjct: 1646 QKIEV 1650