BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001956
         (4073 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...   157   2e-35
gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                   154   2e-34
gb|AAW48302.1| potato resistance-like protein I2GA-SH194-2 [Sola...   147   2e-32
emb|CBI40990.3| unnamed protein product [Vitis vinifera]              141   1e-30
gb|ABV29178.1| disease resistance protein R3a-like protein [Sola...   140   2e-30

>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
            gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
            protein ccsA [Medicago truncatula]
          Length = 666

 Score =  157 bits (398), Expect = 2e-35
 Identities = 106/353 (30%), Positives = 163/353 (46%), Gaps = 7/353 (1%)
 Frame = -2

Query: 3058 GQFSVQSAFETIRRRAPGSWWCKHLWHNWLQPKISGTAWKLLRNCAATDESLQKRGVKLV 2879
            G  + Q A++ I        W K LW++++ P  S   W+LL N   TDE+L+KRG  +V
Sbjct: 16   GDLTNQLAYKFINETGNHVLWDKFLWNSYIPPSRSFITWRLLHNKLPTDENLRKRGCLIV 75

Query: 2878 FRCYMGCNAADTLQHILWDCTEAKKLWEWAGFQFGYNGNFTNFSEALRLHRRS----GFL 2711
              C     +A++ QHI ++C    +LW+W G          + S  L+L  R+      L
Sbjct: 76   SICCFCMKSAESSQHIFFECHVTSRLWDWLGKG---TDKLLDCSSCLQLLIRNWGSGSKL 132

Query: 2710 VKQLWVSTVLAGMVINWRSRNQCIFEGEQLSLCQRKAQLKTNIQFSYCLATGKMKRGGSE 2531
            V  +  S ++  +   W  RNQ  F  +  ++      +   ++ S+ L   K      +
Sbjct: 133  VNNILNSAIIHTIWSIWIERNQRCFHNKHQAMTTLFNIILAEVKMSFSLCMIKGNSAMQD 192

Query: 2530 SRILKNWGLQDKLGRAPRIKDCKWYPPEGDIIKVNVDGDSCGNPGPSSYGVCFRNYECVF 2351
             ++ K + +  K+ R     D  W PP GDI+K+N DG S G     S G+  R+    F
Sbjct: 193  YKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHF 252

Query: 2350 LASLCRNIGHQTNFIAECLAILEAVEYAIKRNWRKVWVELDSTSAVNVFETS-SVPWCMK 2174
            L ++  NIG+ T   AE  A + A+E A +     V +E DS   VN F     VPW M+
Sbjct: 253  LGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMR 312

Query: 2173 QRWQRCINLLDYYKLT--PVWREANFTADQLAKYSVSLQDNDQVVFIVKPPWI 2021
             RWQ C +  D    +   + RE N  AD LAK+   L      ++   PP+I
Sbjct: 313  ARWQNCWDFCDSISCSCVHILREGNMVADALAKHGQGLSLYYTQLWTSPPPFI 365


>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score =  154 bits (388), Expect = 2e-34
 Identities = 109/396 (27%), Positives = 176/396 (44%), Gaps = 9/396 (2%)
 Frame = -2

Query: 3199 KVSSIISDGAWSISR--ALQVILMIAGFNLNQLPIINGANHAIWKPDQQGQFSVQSAFET 3026
            KV++ + +G W +S   A +   ++   +   LP+    +  IW     G  S + AF  
Sbjct: 2    KVANYLVNGEWILSDFFAYKDNALVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAFSF 61

Query: 3025 IRRRAPGSWWCKHLWHNWLQPKISGTAWKLLRNCAATDESLQKRGVKLVFRCYMGCNA-A 2849
            +    P   W K LW+ +  P  +   W+ L N   TD++L+KRG  +V  C   C   A
Sbjct: 62   LPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQA 121

Query: 2848 DTLQHILWDCTEAKKLWEWAGFQFGYNGNFTNFSEALRLHRRSGFLVKQLWVSTVLAGMV 2669
            +T  HI   C    +LW+W            +FS  L + R    +V+ +  S ++  M 
Sbjct: 122  ETSSHIFLQCPVTLQLWDWL---LKATDQHLDFSSILNISR----MVQHVMNSAIVHIMW 174

Query: 2668 INWRSRNQCIFEGEQLSLCQR-KAQLKTNIQFSYCLATGKMKRGGSESRILKNWGLQDKL 2492
              W   N   F+G Q  +       L   ++ S+ L   K      + ++ + + +  K 
Sbjct: 175  SIWLECNNKYFDGVQKPMSTLFNTILAEVLRLSFMLDIVKGASSMQDFKLARLFSIPFKT 234

Query: 2491 GRAPRIKDCKWYPPEGDIIKVNVDGDSCGNPGPSSYGVCFRNYECVFLASLCRNIGHQTN 2312
             R    ++  W PP G  +K+N DG   G+P   S GV FR  + +F  +  +NIG+ T 
Sbjct: 235  NRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATA 294

Query: 2311 FIAECLAILEAVEYAIKRNWRKVWVELDSTSAVNVFE-TSSVPWCMKQRWQRCINLLDYY 2135
              AE  A + A+E A + +   +W+E DS + +  F   + VPW M  RW  C+      
Sbjct: 295  LEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHNCLLFCRSI 354

Query: 2134 K--LTPVWREANFTADQLAK--YSVSLQDNDQVVFI 2039
            +   T V RE N  AD LAK    ++L  +  + FI
Sbjct: 355  RSLCTHVNREGNLVADALAKNGQGLALYSSHPLAFI 390


>gb|AAW48302.1| potato resistance-like protein I2GA-SH194-2 [Solanum tuberosum]
          Length = 1286

 Score =  147 bits (372), Expect = 2e-32
 Identities = 88/256 (34%), Positives = 135/256 (52%), Gaps = 6/256 (2%)
 Frame = +1

Query: 1    LHGALRILRLENVFSLEEAKEAALDQKRYLDKLELQWSELRDGF------ELLENLQPHT 162
            L+G+L ++ L+NV    EA +A + +K ++DKL L+WSE           ++L+ L+PH 
Sbjct: 703  LYGSLSVVELQNVVDSREAVKAKMREKNHVDKLSLEWSESSSADNSQTERDILDELRPHK 762

Query: 163  NLKELQIVGYGGAKFPSWIGNHRFSKLVNIIIHDCKKCKFLSPFGKLPLLKSLSVSEMHE 342
            N+KELQI+GY G KFP+W+ +  F KLV + I +CK C  L   G+LP LK LS+  MH 
Sbjct: 763  NIKELQIIGYRGTKFPNWLADPLFLKLVQLSIDNCKNCYSLPALGQLPFLKFLSIRGMHG 822

Query: 343  VKAIDHQFCGRNMXXXXXXXXXXXXWTVSENLVNDNVFTAFPRLENLTLNGMPKLEKWSG 522
            +  +  +F G                       + +    F  L  L    MP+ ++W  
Sbjct: 823  ITEVTEEFYG-----------------------SCSSKKPFNSLVELRFEDMPEWKQWDL 859

Query: 523  IVEGDFPQLQKLNIFGCLELTGLPQLSLLDSMQKLEIRLCPLLESFPMDGLPNSLQDLVI 702
            +  G+FP L+KL I  C EL+       L S++  E+   P++ +FP   LP +L+ + I
Sbjct: 860  LGSGEFPILEKLLIENCPELSLETVPIQLSSLKSFEVSGSPMVINFPFSILPTTLKRIRI 919

Query: 703  IDCPVLKERCQKEVGE 750
            IDC  LK   ++ VGE
Sbjct: 920  IDCQKLK--LEQPVGE 933



 Score = 65.5 bits (158), Expect = 1e-07
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
 Frame = +1

Query: 472  LENLTLNGMPKLEKWSGIVEGDFPQ-LQKLNIFGCLELTGLPQLSLLDSMQKLEIRLCPL 648
            L  LT+N  P L+  S   E   P  L +L I  C +L  LP+L+L  S+ +L I  CP 
Sbjct: 1192 LSQLTINNCPNLQSLS---ESTLPSSLSQLEISHCPKLQSLPELALPSSLSQLTISHCPK 1248

Query: 649  LESFPMDGLPNSLQDLVIIDCPVLK 723
            L+S P+ G+P+SL +L I +CP+LK
Sbjct: 1249 LQSLPLKGMPSSLSELSIYNCPLLK 1273


>emb|CBI40990.3| unnamed protein product [Vitis vinifera]
          Length = 1093

 Score =  141 bits (356), Expect = 1e-30
 Identities = 104/325 (32%), Positives = 148/325 (45%), Gaps = 61/325 (18%)
 Frame = +1

Query: 1    LHGALRILRLENVFSLEEAKEAALDQKRYLDKLELQWSEL-------RDGFELLENLQPH 159
            L G L IL LENV  L  A+   L + R ++ L + WSE        R   E+L+ LQPH
Sbjct: 329  LRGELSILGLENVLDLRGARYVNLKEGRNIEDLIMVWSEKFGNSRNERTKIEVLKWLQPH 388

Query: 160  TNLKELQIVGYGGAKFPSWIGNHRFSKLVNIIIHDCKKCKFLSPFGKLPLLKSLSVSEMH 339
             +LK+L I  YGG+KF +WIG+  FSK+V + + +CK C  L   G LP LK+L +  M+
Sbjct: 389  QSLKKLDIRFYGGSKFLNWIGDPSFSKMVYLDLINCKNCTSLPALGGLPFLKNLVIEGMN 448

Query: 340  EVKAIDHQFCGRNM-------XXXXXXXXXXXXWTVSENLVNDNVFTAFPRLENLTLNGM 498
            EVK I  +F G                      W + + L ++     FP L  L +   
Sbjct: 449  EVKLIGDEFYGETANPFRALEHLRFEKMPQWKDWLIPK-LGHEETQALFPCLRELIIIKC 507

Query: 499  PKLEKWS-----------------GIVEGDFPQLQKLNIFGCLELTG------------- 588
            PKL   S                  I     P L KL + G L++ G             
Sbjct: 508  PKLINLSHELPSLVTLHVQECQELDISIPRLPLLIKLIVVGLLKMNGCYNLEKLPNALHT 567

Query: 589  -----------------LPQLSLLDSMQKLEIRLCPLLESFPMDGLPNSLQDLVIIDCPV 717
                              P++ L   +++L +R C L    P +GLP +L  LVI +CPV
Sbjct: 568  LTSLTDLLIHNCPKLLSFPEIGLPPMLRRLRVRNCRLRSFVPNEGLPATLARLVIRECPV 627

Query: 718  LKERCQKEVGEEWRKLAQIPSVWMD 792
            LK+RC K+ G++W K+A IP + +D
Sbjct: 628  LKKRCLKDKGKDWPKIAHIPYMQID 652



 Score = 63.9 bits (154), Expect = 3e-07
 Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
 Frame = +1

Query: 598  LSLLDSMQKLEIRLCPLLESF-PMDGLPNSLQDLVIIDCPVLKERCQKEVGEEWRKLAQI 774
            L  L S++ LE+  CP L SF P +GL  +L  LVI +CP+LK+RC K+ G++W K+A I
Sbjct: 1023 LQSLISLKTLELYNCPELRSFVPKEGLLPTLARLVIWECPILKKRCLKDKGKDWPKIAHI 1082

Query: 775  PSVWMDD 795
            P V +DD
Sbjct: 1083 PYVEIDD 1089


>gb|ABV29178.1| disease resistance protein R3a-like protein [Solanum demissum]
          Length = 1270

 Score =  140 bits (354), Expect = 2e-30
 Identities = 86/248 (34%), Positives = 132/248 (53%), Gaps = 7/248 (2%)
 Frame = +1

Query: 1    LHGALRILRLENVFSLEEAKEAALDQKRYLDKLELQWSEL-----RDGFELLENLQPHTN 165
            L+G+L IL L+NV    EA +A + +K +++KL L+WSE      +   ++L++L PHTN
Sbjct: 703  LYGSLSILELQNVVDRREAAKAKMREKNHVEKLSLEWSESSADNSQTERDILDDLHPHTN 762

Query: 166  LKELQIVGYGGAKFPSWIGNHRFSKLVNIIIHDCKKCKFLSPFGKLPLLKSLSVSEMHEV 345
            +KEL+I GY G KFP+W+ +  F KLV + + +CK C  L   G+LP LK LS+  MH +
Sbjct: 763  IKELRITGYRGKKFPNWLADPLFLKLVKLSLRNCKDCDSLPALGQLPSLKILSIRGMHRI 822

Query: 346  KAIDHQFCGRNMXXXXXXXXXXXXWTVSENLVNDNVFTAFPRLENLTLNGMPKLEKWSGI 525
              +  +F G                       + +   +F  LE L    M K ++W  +
Sbjct: 823  TKVTEEFYG-----------------------SSSSKKSFNSLEELEFAYMSKWKQWHVL 859

Query: 526  VEGDFPQLQKLNIFGCLELT-GLP-QLSLLDSMQKLEIRLCPLLESFPMDGLPNSLQDLV 699
              G+FP L+ L+I  C EL+  +P QL  +  +++L I  C  L SFP   L ++L  + 
Sbjct: 860  GNGEFPTLKNLSIKNCPELSVEIPIQLEGMKQIERLSIVDCNSLTSFPFSILLSTLNTIY 919

Query: 700  IIDCPVLK 723
            I  C  LK
Sbjct: 920  ISGCQKLK 927



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 32/82 (39%), Positives = 48/82 (58%)
 Frame = +1

Query: 547  LQKLNIFGCLELTGLPQLSLLDSMQKLEIRLCPLLESFPMDGLPNSLQDLVIIDCPVLKE 726
            L KL I+ C  L  L +  L  S+ +L+I  CP L+S  + G+P+SL  L I +CP+L  
Sbjct: 1189 LSKLTIYDCPNLQSLSKSVLPSSLSELDISHCPNLQSLLVKGMPSSLSKLSISNCPLLTP 1248

Query: 727  RCQKEVGEEWRKLAQIPSVWMD 792
              + + GE W  +AQIP + +D
Sbjct: 1249 LLEFDKGEYWPNIAQIPIIDID 1270