BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001893
         (1825 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37185.3| unnamed protein product [Vitis vinifera]              483   e-135
ref|XP_002272685.1| PREDICTED: pre-mRNA-processing factor 39-lik...   483   e-134
ref|XP_002526546.1| Pre-mRNA-processing protein prp39, putative ...   451   e-124
ref|XP_004140574.1| PREDICTED: pre-mRNA-processing factor 39-lik...   445   e-122
ref|XP_003553509.1| PREDICTED: pre-mRNA-processing factor 39-lik...   441   e-121

>emb|CBI37185.3| unnamed protein product [Vitis vinifera]
          Length = 432

 Score =  483 bits (1242), Expect(2) = e-135
 Identities = 248/335 (74%), Positives = 278/335 (82%), Gaps = 5/335 (1%)
 Frame = +2

Query: 296  VVKLYERCLIACANYSEFWIRYVLCMEASGSMDSANDALARATQTFVKRQPEIHLFAAKF 475
            VVKLYERCLIACANY E+WIRYVLCMEASGSMD AN+ALARATQ FVKRQPEIHLFAA+F
Sbjct: 43   VVKLYERCLIACANYPEYWIRYVLCMEASGSMDLANNALARATQVFVKRQPEIHLFAARF 102

Query: 476  REQTGNIAGAREAYQHVHSGISPGLLEAIIKHANMEHRLGNTEDAFSLYDQAIATEKGKE 655
            REQ G+I G+R AYQ VH+ ISPGLLEAIIKHANMEHRLGN EDAFSLY+QAIA EKGKE
Sbjct: 103  REQKGDIPGSRAAYQLVHTEISPGLLEAIIKHANMEHRLGNLEDAFSLYEQAIAIEKGKE 162

Query: 656  QSQTLPMLFVQYARFQYLVAGNLEKAREILDGALEHVELSKPFLEALIHLESVHLVPKRI 835
             SQTLPMLF QY+RF YLV GN EKAREIL  ALEHV+LSKP LEALIHLES+  +PKRI
Sbjct: 163  HSQTLPMLFAQYSRFLYLVTGNTEKAREILVEALEHVQLSKPLLEALIHLESIQSLPKRI 222

Query: 836  NYIDSLVEKFIVPNFDNPNAPSATDREDLSSIYLEFLDLFGDVQTNKKASDRHAKLFLXX 1015
            +++DSLV+KFI  N ++PNA SA +RE+LSSI+LEFLDLFGD Q+ KKA DRHAKLFL  
Sbjct: 223  DHLDSLVDKFIHTNPESPNAASAAEREELSSIFLEFLDLFGDAQSIKKADDRHAKLFLHH 282

Query: 1016 XXXXXXXXXXAEDFLASDKTKVAKSYASVPSAAQAAMGAYPNAQNQW-SAYGVQPQAWMP 1192
                      AEDFLASDK K+AKSY+ VPS AQ+ MGAYP+AQNQW S YG+QPQAW  
Sbjct: 283  RSTSELKKRHAEDFLASDKAKLAKSYSGVPSPAQSLMGAYPSAQNQWASGYGLQPQAWPQ 342

Query: 1193 SPQAQGQQY-PGYTQQA---AYGGYNSTYVAPQVP 1285
            + QAQGQQ+ PGYTQQA   AY GY S+Y  PQ+P
Sbjct: 343  ATQAQGQQWNPGYTQQAAYNAYSGYGSSYTHPQIP 377



 Score = 29.3 bits (64), Expect(2) = e-135
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 106 IFITLTIFYQARMVPLFVYEGPSCSANGVLLVH 204
           + I LTI    +  P F  EGP CS NGV+ ++
Sbjct: 15  LLIFLTICLSGKEGPSFRIEGPPCSFNGVVKLY 47


>ref|XP_002272685.1| PREDICTED: pre-mRNA-processing factor 39-like [Vitis vinifera]
          Length = 832

 Score =  483 bits (1243), Expect = e-134
 Identities = 248/336 (73%), Positives = 279/336 (83%), Gaps = 5/336 (1%)
 Frame = +2

Query: 293  QVVKLYERCLIACANYSEFWIRYVLCMEASGSMDSANDALARATQTFVKRQPEIHLFAAK 472
            +VVKLYERCLIACANY E+WIRYVLCMEASGSMD AN+ALARATQ FVKRQPEIHLFAA+
Sbjct: 442  KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLANNALARATQVFVKRQPEIHLFAAR 501

Query: 473  FREQTGNIAGAREAYQHVHSGISPGLLEAIIKHANMEHRLGNTEDAFSLYDQAIATEKGK 652
            FREQ G+I G+R AYQ VH+ ISPGLLEAIIKHANMEHRLGN EDAFSLY+QAIA EKGK
Sbjct: 502  FREQKGDIPGSRAAYQLVHTEISPGLLEAIIKHANMEHRLGNLEDAFSLYEQAIAIEKGK 561

Query: 653  EQSQTLPMLFVQYARFQYLVAGNLEKAREILDGALEHVELSKPFLEALIHLESVHLVPKR 832
            E SQTLPMLF QY+RF YLV GN EKAREIL  ALEHV+LSKP LEALIHLES+  +PKR
Sbjct: 562  EHSQTLPMLFAQYSRFLYLVTGNTEKAREILVEALEHVQLSKPLLEALIHLESIQSLPKR 621

Query: 833  INYIDSLVEKFIVPNFDNPNAPSATDREDLSSIYLEFLDLFGDVQTNKKASDRHAKLFLX 1012
            I+++DSLV+KFI  N ++PNA SA +RE+LSSI+LEFLDLFGD Q+ KKA DRHAKLFL 
Sbjct: 622  IDHLDSLVDKFIHTNPESPNAASAAEREELSSIFLEFLDLFGDAQSIKKADDRHAKLFLH 681

Query: 1013 XXXXXXXXXXXAEDFLASDKTKVAKSYASVPSAAQAAMGAYPNAQNQW-SAYGVQPQAWM 1189
                       AEDFLASDK K+AKSY+ VPS AQ+ MGAYP+AQNQW S YG+QPQAW 
Sbjct: 682  HRSTSELKKRHAEDFLASDKAKLAKSYSGVPSPAQSLMGAYPSAQNQWASGYGLQPQAWP 741

Query: 1190 PSPQAQGQQY-PGYTQQA---AYGGYNSTYVAPQVP 1285
             + QAQGQQ+ PGYTQQA   AY GY S+Y  PQ+P
Sbjct: 742  QATQAQGQQWNPGYTQQAAYNAYSGYGSSYTHPQIP 777


>ref|XP_002526546.1| Pre-mRNA-processing protein prp39, putative [Ricinus communis]
            gi|223534107|gb|EEF35824.1| Pre-mRNA-processing protein
            prp39, putative [Ricinus communis]
          Length = 829

 Score =  451 bits (1160), Expect = e-124
 Identities = 229/363 (63%), Positives = 277/363 (76%), Gaps = 9/363 (2%)
 Frame = +2

Query: 224  HFSPFFFQSPTYWTSFMMF----SVLFQVVKLYERCLIACANYSEFWIRYVLCMEASGSM 391
            H  P        W +++ F      L +VVKL+ERCLIACANY E+WIRY LCMEASGSM
Sbjct: 413  HVRPLNVAELENWHNYLDFLEREDDLNKVVKLFERCLIACANYPEYWIRYTLCMEASGSM 472

Query: 392  DSANDALARATQTFVKRQPEIHLFAAKFREQTGNIAGAREAYQHVHSGISPGLLEAIIKH 571
            D A++ALARATQ FVKR+PEIHLFAA+FREQ G++ GAR AYQ VH+ I+PGL EA++KH
Sbjct: 473  DLASNALARATQVFVKRRPEIHLFAARFREQNGDVPGARAAYQLVHTEIAPGLFEAVVKH 532

Query: 572  ANMEHRLGNTEDAFSLYDQAIATEKGKEQSQTLPMLFVQYARFQYLVAGNLEKAREILDG 751
            ANMEHRLGN +DA SLY+QAIA EKGKE SQ LPML+ QY RF YLV+GN+ KAREIL  
Sbjct: 533  ANMEHRLGNLKDACSLYEQAIAIEKGKEHSQVLPMLYAQYTRFLYLVSGNINKAREILVE 592

Query: 752  ALEHVELSKPFLEALIHLESVHLVPKRINYIDSLVEKFIVPNFDNPNAPSATDREDLSSI 931
            ALE+V+LSKP LEA IH+ES+  +PKRI+Y+DSLV+KF++PN D+ +A SATDRE+LS I
Sbjct: 593  ALENVQLSKPLLEAFIHIESIQSLPKRIDYLDSLVDKFVMPNSDSLSAASATDREELSCI 652

Query: 932  YLEFLDLFGDVQTNKKASDRHAKLFLXXXXXXXXXXXXAEDFLASDKTKVAKSYASVPSA 1111
            +LEFL +FGD Q+ KKA DRHAKLFL            A+D+L SDK+K+AK+Y   PS 
Sbjct: 653  FLEFLGMFGDAQSIKKADDRHAKLFLPHRSKSEFKKRHADDYLTSDKSKIAKAYGDAPSP 712

Query: 1112 AQAAMGAYPNAQNQWSA-YGVQPQAWMPSPQAQGQQY-PGYTQQAA---YGGYNSTYVAP 1276
             Q+ MGAYP+ QNQW+A YGVQPQAW P+ QAQ QQ+ PGY QQAA   YG Y S+Y  P
Sbjct: 713  VQSLMGAYPSTQNQWAAGYGVQPQAWPPATQAQMQQWTPGYGQQAAYSTYGSYASSYTTP 772

Query: 1277 QVP 1285
            Q P
Sbjct: 773  QAP 775


>ref|XP_004140574.1| PREDICTED: pre-mRNA-processing factor 39-like [Cucumis sativus]
            gi|449487353|ref|XP_004157584.1| PREDICTED:
            pre-mRNA-processing factor 39-like [Cucumis sativus]
          Length = 831

 Score =  445 bits (1144), Expect = e-122
 Identities = 229/359 (63%), Positives = 274/359 (76%), Gaps = 6/359 (1%)
 Frame = +2

Query: 224  HFSPFFFQSPTYWTSFMMF----SVLFQVVKLYERCLIACANYSEFWIRYVLCMEASGSM 391
            H  P        W S++ F      L +VVKLYERC+IACANY E+WIRY+LCM+AS SM
Sbjct: 414  HVRPLNVAELDNWHSYLDFIEQEGDLNKVVKLYERCVIACANYPEYWIRYILCMQASDSM 473

Query: 392  DSANDALARATQTFVKRQPEIHLFAAKFREQTGNIAGAREAYQHVHSGISPGLLEAIIKH 571
            D AN+ALARA+Q FVKR+PEIHLFAA+F+EQ G+IAGAR +YQ VHS ISPGLLEAIIKH
Sbjct: 474  DLANNALARASQVFVKRRPEIHLFAARFKEQNGDIAGARASYQLVHSEISPGLLEAIIKH 533

Query: 572  ANMEHRLGNTEDAFSLYDQAIATEKGKEQSQTLPMLFVQYARFQYLVAGNLEKAREILDG 751
            ANMEHRLGN EDA+S+Y+QAIA E+GKE S+ L +L+ QY+RFQ LV  N  KAREILD 
Sbjct: 534  ANMEHRLGNLEDAYSVYEQAIAIERGKEHSRALSLLYAQYSRFQNLVCKNEGKAREILDK 593

Query: 752  ALEHVELSKPFLEALIHLESVHLVPKRINYIDSLVEKFIVPNFDNPNAPSATDREDLSSI 931
            A+EH ELSKP +EALIH E++    KRI+Y+DSLVEK IVPN +N    SA+ RE+LSSI
Sbjct: 594  AVEHGELSKPLIEALIHFEAIQSTGKRIDYLDSLVEKVIVPNTENATVVSASMREELSSI 653

Query: 932  YLEFLDLFGDVQTNKKASDRHAKLFLXXXXXXXXXXXXAEDFLASDKTKVAKSYASVPSA 1111
            +LEFL+LFGDVQ+ KKA DRH KLF+            A+D+LAS+K K+AK+Y SV S 
Sbjct: 654  FLEFLNLFGDVQSIKKAEDRHVKLFISHKSTSELKKRLADDYLASEKAKMAKTYPSVASP 713

Query: 1112 AQAAMGAYPNAQNQWSA-YGVQPQAWMPSPQAQGQQY-PGYTQQAAYGGYNSTYVAPQV 1282
            AQ+ MG YP +QNQW+A YGVQPQAW P  QAQGQQ+ PGYTQ A+Y GY STY  PQV
Sbjct: 714  AQSLMGVYPTSQNQWAASYGVQPQAWPPVAQAQGQQWAPGYTQSASYSGYGSTYTNPQV 772


>ref|XP_003553509.1| PREDICTED: pre-mRNA-processing factor 39-like [Glycine max]
          Length = 828

 Score =  441 bits (1134), Expect = e-121
 Identities = 232/364 (63%), Positives = 274/364 (75%), Gaps = 10/364 (2%)
 Frame = +2

Query: 224  HFSPFFFQSPTYWTSFMMF----SVLFQVVKLYERCLIACANYSEFWIRYVLCMEASGSM 391
            H  P        W +++ F      L ++VKLYERC+IACANY E+WIRYVLCMEASGSM
Sbjct: 414  HVRPLNVGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASGSM 473

Query: 392  DSANDALARATQTFVKRQPEIHLFAAKFREQTGNIAGAREAYQHVHSGISPGLLEAIIKH 571
            D AN+ LARATQ FVKRQPEIHLF A+F+EQTG+I GAR AYQ VH+  SPGLLEAIIKH
Sbjct: 474  DLANNVLARATQVFVKRQPEIHLFCARFKEQTGDIDGARAAYQLVHTETSPGLLEAIIKH 533

Query: 572  ANMEHRLGNTEDAFSLYDQAIATEKGKEQSQTLPMLFVQYARFQYLVAGNLEKAREILDG 751
            ANME+RLG  EDAFSLY+ AIA EKGKE SQTLPMLF QY+RF YL +GN EKAR+IL  
Sbjct: 534  ANMEYRLGKMEDAFSLYEHAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVE 593

Query: 752  ALEHVELSKPFLEALIHLESVHLVPKR--INYIDSLVEKFIVPNFDNPNAPSATDREDLS 925
             LE+V LSKP LEAL+H E++  +PKR  +++++S V KFI+PN ++    S T+RE+LS
Sbjct: 594  GLENVLLSKPLLEALLHFEAIQPLPKRVGVDFLESWVVKFIMPNSESAGVASPTEREELS 653

Query: 926  SIYLEFLDLFGDVQTNKKASDRHAKLFLXXXXXXXXXXXXAEDFLASDKTKVAKSYASVP 1105
            SI+LEFL+LFGDVQ+ K+A DRHAKLFL            AEDFL SDKTKV +SY S  
Sbjct: 654  SIFLEFLNLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLVSDKTKVPRSY-SAQ 712

Query: 1106 SAAQAAMGAYPNAQNQWSAYGVQPQAWMPSPQAQGQQY-PGYTQQAAYG---GYNSTYVA 1273
            S AQ+AMGAYPNAQNQW+ YGVQPQ W P  QAQGQQ+  GYTQQA+YG   GY S YV 
Sbjct: 713  SPAQSAMGAYPNAQNQWTNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGYGSNYVN 772

Query: 1274 PQVP 1285
             Q+P
Sbjct: 773  SQLP 776