BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001761
         (1114 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279095.1| PREDICTED: cleavage and polyadenylation spec...   285   1e-74
emb|CBI27869.3| unnamed protein product [Vitis vinifera]              285   1e-74
ref|XP_002514092.1| pre-mRNA cleavage factor im, 25kD subunit, p...   278   1e-72
ref|XP_002308275.1| predicted protein [Populus trichocarpa] gi|2...   274   3e-71
ref|XP_004141062.1| PREDICTED: cleavage and polyadenylation spec...   272   1e-70

>ref|XP_002279095.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            5-like [Vitis vinifera]
          Length = 284

 Score =  285 bits (730), Expect = 1e-74
 Identities = 139/217 (64%), Positives = 170/217 (78%)
 Frame = -1

Query: 1081 SDREMDSSTEQSNRNTSTVNIYPLSNYYFGSKQSLNIKDETQAEHAQRMKANLWDCDSYA 902
            +D +  SS + SN     ++IYPLS YYFGSK  L +K+ET A+   RMK+N      Y+
Sbjct: 76   ADGDRSSSGDSSNH---VLDIYPLSCYYFGSKDPLLLKEETLADRILRMKSN------YS 126

Query: 901  THGLRTCVEALLVVELHKHPHLLVLQVRNSVFKLPGGRLRPGESEVDGLKRKLSSKLCDD 722
             +G RTCV A+++VEL KHPHLL+LQV+NS FKLPGGRLRPGESE++GLKRKLS KL  +
Sbjct: 127  RYGSRTCVVAVILVELFKHPHLLLLQVKNSFFKLPGGRLRPGESEINGLKRKLSRKLSVN 186

Query: 721  EDGSDTDWEVGECVGMWWRSDFETLAYPYFPTSLRRPKECTKLFLVKLPVSKRLIVPKNL 542
            EDG  +DWEVGEC+GMWWR DFETL YPY P +++ PKECTKLFLVKLP S++ IVPKNL
Sbjct: 187  EDGDGSDWEVGECLGMWWRPDFETLLYPYLPPNVKNPKECTKLFLVKLPPSRKFIVPKNL 246

Query: 541  KLLAVPFYGIHENDKTYGQVISGVPMLLSKFIFNIIE 431
            KLLA+P   +HENDKTYG +I+GVP LLSKF FNII+
Sbjct: 247  KLLAIPLCQLHENDKTYGPIIAGVPQLLSKFSFNIID 283


>emb|CBI27869.3| unnamed protein product [Vitis vinifera]
          Length = 291

 Score =  285 bits (730), Expect = 1e-74
 Identities = 139/217 (64%), Positives = 170/217 (78%)
 Frame = -1

Query: 1081 SDREMDSSTEQSNRNTSTVNIYPLSNYYFGSKQSLNIKDETQAEHAQRMKANLWDCDSYA 902
            +D +  SS + SN     ++IYPLS YYFGSK  L +K+ET A+   RMK+N      Y+
Sbjct: 83   ADGDRSSSGDSSNH---VLDIYPLSCYYFGSKDPLLLKEETLADRILRMKSN------YS 133

Query: 901  THGLRTCVEALLVVELHKHPHLLVLQVRNSVFKLPGGRLRPGESEVDGLKRKLSSKLCDD 722
             +G RTCV A+++VEL KHPHLL+LQV+NS FKLPGGRLRPGESE++GLKRKLS KL  +
Sbjct: 134  RYGSRTCVVAVILVELFKHPHLLLLQVKNSFFKLPGGRLRPGESEINGLKRKLSRKLSVN 193

Query: 721  EDGSDTDWEVGECVGMWWRSDFETLAYPYFPTSLRRPKECTKLFLVKLPVSKRLIVPKNL 542
            EDG  +DWEVGEC+GMWWR DFETL YPY P +++ PKECTKLFLVKLP S++ IVPKNL
Sbjct: 194  EDGDGSDWEVGECLGMWWRPDFETLLYPYLPPNVKNPKECTKLFLVKLPPSRKFIVPKNL 253

Query: 541  KLLAVPFYGIHENDKTYGQVISGVPMLLSKFIFNIIE 431
            KLLA+P   +HENDKTYG +I+GVP LLSKF FNII+
Sbjct: 254  KLLAIPLCQLHENDKTYGPIIAGVPQLLSKFSFNIID 290


>ref|XP_002514092.1| pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus
            communis] gi|223546548|gb|EEF48046.1| pre-mRNA cleavage
            factor im, 25kD subunit, putative [Ricinus communis]
          Length = 214

 Score =  278 bits (712), Expect = 1e-72
 Identities = 137/220 (62%), Positives = 166/220 (75%), Gaps = 3/220 (1%)
 Frame = -1

Query: 1084 MSDREM---DSSTEQSNRNTSTVNIYPLSNYYFGSKQSLNIKDETQAEHAQRMKANLWDC 914
            M D E+   ++  E S      ++IYPLS YYFGSK  L  +DET  +  QRMK+N    
Sbjct: 1    MGDHEVVVNNNHHEASRDQGFVLDIYPLSRYYFGSKDPLPFRDETLVDRVQRMKSN---- 56

Query: 913  DSYATHGLRTCVEALLVVELHKHPHLLVLQVRNSVFKLPGGRLRPGESEVDGLKRKLSSK 734
              Y  HGLRTCVEA+++VEL KHPHLL+LQ++NS+FKLPGGR+RPGES++ GLKRKLS K
Sbjct: 57   --YLAHGLRTCVEAVILVELFKHPHLLLLQIKNSIFKLPGGRIRPGESDIGGLKRKLSRK 114

Query: 733  LCDDEDGSDTDWEVGECVGMWWRSDFETLAYPYFPTSLRRPKECTKLFLVKLPVSKRLIV 554
            L +++D   TDWEVGEC+GMWWR DFETL YPY P +L+ PKECTKLFLV+LP S + IV
Sbjct: 115  LSNNQD--QTDWEVGECLGMWWRPDFETLLYPYLPPNLKTPKECTKLFLVRLPTSCKFIV 172

Query: 553  PKNLKLLAVPFYGIHENDKTYGQVISGVPMLLSKFIFNII 434
            PKNLKLLAVP   IH+N KTYG +ISGVP LLSK+ F II
Sbjct: 173  PKNLKLLAVPLSQIHDNHKTYGGIISGVPQLLSKYSFRII 212


>ref|XP_002308275.1| predicted protein [Populus trichocarpa] gi|222854251|gb|EEE91798.1|
            predicted protein [Populus trichocarpa]
          Length = 210

 Score =  274 bits (700), Expect = 3e-71
 Identities = 131/207 (63%), Positives = 163/207 (78%)
 Frame = -1

Query: 1057 TEQSNRNTSTVNIYPLSNYYFGSKQSLNIKDETQAEHAQRMKANLWDCDSYATHGLRTCV 878
            T+ +N  ++ + IYPL +YYFGSK  +  +DET A+  QRMK+N      ++  GLRT V
Sbjct: 9    TDNNNHQSTVIEIYPLGSYYFGSKDPIAFRDETIADRVQRMKSN------FSARGLRTSV 62

Query: 877  EALLVVELHKHPHLLVLQVRNSVFKLPGGRLRPGESEVDGLKRKLSSKLCDDEDGSDTDW 698
            +A+++VEL KHPHLL+LQVRN+ FKLPGGRLRPGES++DGL+RKLS  L  +ED +D  W
Sbjct: 63   QAVMLVELFKHPHLLLLQVRNAFFKLPGGRLRPGESDIDGLQRKLSRMLSVNEDETD-HW 121

Query: 697  EVGECVGMWWRSDFETLAYPYFPTSLRRPKECTKLFLVKLPVSKRLIVPKNLKLLAVPFY 518
            EVG+C+GMWWRSDFETL YPY P +L+ PKECTKL++VKLP S++ IVPKNLKLLAVP  
Sbjct: 122  EVGDCLGMWWRSDFETLLYPYLPPNLKVPKECTKLYVVKLPASRKFIVPKNLKLLAVPLC 181

Query: 517  GIHENDKTYGQVISGVPMLLSKFIFNI 437
             +HEN KTYG VISGVP LLSKF FNI
Sbjct: 182  QVHENHKTYGPVISGVPQLLSKFSFNI 208


>ref|XP_004141062.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            5-like [Cucumis sativus] gi|449488056|ref|XP_004157928.1|
            PREDICTED: cleavage and polyadenylation specificity
            factor subunit 5-like [Cucumis sativus]
          Length = 217

 Score =  272 bits (695), Expect = 1e-70
 Identities = 129/212 (60%), Positives = 159/212 (75%)
 Frame = -1

Query: 1069 MDSSTEQSNRNTSTVNIYPLSNYYFGSKQSLNIKDETQAEHAQRMKANLWDCDSYATHGL 890
            +D     S    S ++IYPLSNYYFGSK+ L  KDET ++   RMK+N      YA HGL
Sbjct: 10   IDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSN------YAAHGL 63

Query: 889  RTCVEALLVVELHKHPHLLVLQVRNSVFKLPGGRLRPGESEVDGLKRKLSSKLCDDEDGS 710
            RTCVEA+++VEL KHPHLL+ Q+RNS+FKLPGGR+RP ES++DGL RKL+ KL  +    
Sbjct: 64   RTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASD 123

Query: 709  DTDWEVGECVGMWWRSDFETLAYPYFPTSLRRPKECTKLFLVKLPVSKRLIVPKNLKLLA 530
             + WEV EC+GMWWR DFETL +PY  T+++  KECTKLFLVKLP S++ +VPKNLKL+A
Sbjct: 124  ASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIA 183

Query: 529  VPFYGIHENDKTYGQVISGVPMLLSKFIFNII 434
            VP   IHEN KTYG +ISG+P LLSKF FNII
Sbjct: 184  VPLCQIHENHKTYGPIISGIPQLLSKFSFNII 215