BLASTX nr result

ID: Coptis24_contig00001636 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001636
         (295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004168263.1| PREDICTED: uncharacterized protein At3g15000...    61   8e-08
ref|XP_004137307.1| PREDICTED: uncharacterized protein At3g15000...    61   8e-08
ref|XP_003543219.1| PREDICTED: uncharacterized protein At3g15000...    59   3e-07
ref|XP_003540481.1| PREDICTED: uncharacterized protein At3g15000...    59   3e-07
ref|XP_002285388.1| PREDICTED: uncharacterized protein At3g15000...    59   5e-07

>ref|XP_004168263.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial-like,
           partial [Cucumis sativus]
          Length = 278

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 30/50 (60%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
 Frame = +2

Query: 149 RVRPLGCV-SNELRNFTSIRGLRGLSTRATTSSLNDQNPNWSNRPPKETI 295
           R+RPL  + + + R  ++   LR  STRAT+SSLND NPNWSNRPPKETI
Sbjct: 45  RLRPLAAILAADFRCHSAAPSLRDFSTRATSSSLNDPNPNWSNRPPKETI 94


>ref|XP_004137307.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial-like
           [Cucumis sativus]
          Length = 410

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 30/50 (60%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
 Frame = +2

Query: 149 RVRPLGCV-SNELRNFTSIRGLRGLSTRATTSSLNDQNPNWSNRPPKETI 295
           R+RPL  + + + R  ++   LR  STRAT+SSLND NPNWSNRPPKETI
Sbjct: 45  RLRPLAAILAADFRCHSAAPSLRDFSTRATSSSLNDPNPNWSNRPPKETI 94


>ref|XP_003543219.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial-like
           [Glycine max]
          Length = 401

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 27/29 (93%), Positives = 27/29 (93%)
 Frame = +2

Query: 209 LRGLSTRATTSSLNDQNPNWSNRPPKETI 295
           LR LSTRATTSSLND NPNWSNRPPKETI
Sbjct: 59  LRALSTRATTSSLNDPNPNWSNRPPKETI 87


>ref|XP_003540481.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial-like
           [Glycine max]
          Length = 363

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 27/29 (93%), Positives = 27/29 (93%)
 Frame = +2

Query: 209 LRGLSTRATTSSLNDQNPNWSNRPPKETI 295
           LR LSTRATTSSLND NPNWSNRPPKETI
Sbjct: 61  LRALSTRATTSSLNDPNPNWSNRPPKETI 89


>ref|XP_002285388.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial [Vitis
           vinifera]
          Length = 421

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 29/50 (58%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
 Frame = +2

Query: 149 RVRPLGCVS-NELRNFTSIRGLRGLSTRATTSSLNDQNPNWSNRPPKETI 295
           R+RPL   + + LR+       R  STR T+SSLND NPNWSNRPPKETI
Sbjct: 40  RLRPLSAAAVSVLRHLPQSTSARSFSTRQTSSSLNDPNPNWSNRPPKETI 89


Top