BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001526
         (657 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524033.1| delta DNA polymerase, putative [Ricinus comm...   116   4e-24
ref|XP_002325451.1| predicted protein [Populus trichocarpa] gi|2...   115   7e-24
ref|XP_002319772.1| predicted protein [Populus trichocarpa] gi|1...   114   2e-23
gb|ABK93288.1| unknown [Populus trichocarpa]                          111   1e-22
ref|NP_563854.1| DNA polymerase delta subunit 4 [Arabidopsis tha...   108   9e-22

>ref|XP_002524033.1| delta DNA polymerase, putative [Ricinus communis]
           gi|223536760|gb|EEF38401.1| delta DNA polymerase,
           putative [Ricinus communis]
          Length = 126

 Score =  116 bits (290), Expect = 4e-24
 Identities = 54/69 (78%), Positives = 61/69 (88%), Gaps = 1/69 (1%)
 Frame = -2

Query: 470 AAFGSNVTQPPALISHGSP-DLKDDYSEEEEVLRQFDMNMAYGPCVGMSRLGRWERANKL 294
           AA GSN+TQP ALISHG   DL+DDY + EEVLRQFDMNMAYGPC+GM+R+GRWERA +L
Sbjct: 40  AAIGSNITQPTALISHGGALDLQDDYDKNEEVLRQFDMNMAYGPCLGMTRVGRWERAQRL 99

Query: 293 GLNPPKQIE 267
           GLNPPKQIE
Sbjct: 100 GLNPPKQIE 108


>ref|XP_002325451.1| predicted protein [Populus trichocarpa] gi|222862326|gb|EEE99832.1|
           predicted protein [Populus trichocarpa]
          Length = 121

 Score =  115 bits (288), Expect = 7e-24
 Identities = 51/68 (75%), Positives = 59/68 (86%)
 Frame = -2

Query: 470 AAFGSNVTQPPALISHGSPDLKDDYSEEEEVLRQFDMNMAYGPCVGMSRLGRWERANKLG 291
           A  GS++TQP AL+SH SPDLKDDY + E+VLRQFDMN AYGPC+GMSRL RWERA +LG
Sbjct: 36  ATLGSDITQPTALVSHDSPDLKDDYDKHEDVLRQFDMNPAYGPCLGMSRLARWERAQRLG 95

Query: 290 LNPPKQIE 267
           LNPPK+IE
Sbjct: 96  LNPPKEIE 103


>ref|XP_002319772.1| predicted protein [Populus trichocarpa] gi|118488437|gb|ABK96033.1|
           unknown [Populus trichocarpa]
           gi|222858148|gb|EEE95695.1| predicted protein [Populus
           trichocarpa]
          Length = 122

 Score =  114 bits (284), Expect = 2e-23
 Identities = 54/100 (54%), Positives = 65/100 (65%)
 Frame = -2

Query: 566 AAGVKDFYRQXXXXXXXXXXXXXXXXXXXXXSAAFGSNVTQPPALISHGSPDLKDDYSEE 387
           ++ +K FYRQ                      A+ GS++TQP A +SHGSPD KD Y E 
Sbjct: 5   SSNMKGFYRQKKNKNSGITKPTSSKKSSLHHIASLGSDITQPTAQVSHGSPDHKDYYDEH 64

Query: 386 EEVLRQFDMNMAYGPCVGMSRLGRWERANKLGLNPPKQIE 267
           EE+LRQFDMNMAYGPC+GMSRL RWERA +LGLNPP + E
Sbjct: 65  EELLRQFDMNMAYGPCLGMSRLARWERAQRLGLNPPNEFE 104


>gb|ABK93288.1| unknown [Populus trichocarpa]
          Length = 122

 Score =  111 bits (277), Expect = 1e-22
 Identities = 53/100 (53%), Positives = 64/100 (64%)
 Frame = -2

Query: 566 AAGVKDFYRQXXXXXXXXXXXXXXXXXXXXXSAAFGSNVTQPPALISHGSPDLKDDYSEE 387
           ++ +K FYRQ                      A+ GS++TQP A +SHGSPD KD Y E 
Sbjct: 5   SSNMKGFYRQKKNKNSGITKPTSSKKSSLHHIASLGSDITQPTAQVSHGSPDHKDYYDEH 64

Query: 386 EEVLRQFDMNMAYGPCVGMSRLGRWERANKLGLNPPKQIE 267
           E +LRQFDMNMAYGPC+GMSRL RWERA +LGLNPP + E
Sbjct: 65  EGLLRQFDMNMAYGPCLGMSRLARWERAQRLGLNPPNEFE 104


>ref|NP_563854.1| DNA polymerase delta subunit 4 [Arabidopsis thaliana]
           gi|98961061|gb|ABF59014.1| At1g09815 [Arabidopsis
           thaliana] gi|332190377|gb|AEE28498.1| DNA polymerase
           delta subunit 4 [Arabidopsis thaliana]
          Length = 124

 Score =  108 bits (270), Expect = 9e-22
 Identities = 49/68 (72%), Positives = 59/68 (86%)
 Frame = -2

Query: 470 AAFGSNVTQPPALISHGSPDLKDDYSEEEEVLRQFDMNMAYGPCVGMSRLGRWERANKLG 291
           AA GS+VTQP ALISHGS DL +DY +EEE+LRQFDMN+ YGPC+GM+RL RWERA +LG
Sbjct: 39  AAQGSDVTQPAALISHGSVDLNEDYDKEEEMLRQFDMNITYGPCLGMTRLDRWERAVRLG 98

Query: 290 LNPPKQIE 267
           +NPP +IE
Sbjct: 99  MNPPNEIE 106