BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001448
         (1217 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [S...   494   e-137
gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding prot...   494   e-137
sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding pro...   493   e-137
emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 pr...   492   e-137
gb|AAA33396.1| light-harvesting chlorophyll a/b protein precurso...   491   e-136

>emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
          Length = 267

 Score =  494 bits (1272), Expect = e-137
 Identities = 237/253 (93%), Positives = 247/253 (97%), Gaps = 1/253 (0%)
 Frame = -2

Query: 898 GKAVKLAPSVSELLGEGRITMRKTVGKPKSVSA-SPWYGPDRVKYLGPFSGESPSYLTGE 722
           GKA+KL P+ SE+LGEGR+TMRKT GKPK+VS+ SPWYGPDRVKYLGPFSGE+PSYLTGE
Sbjct: 15  GKAIKLGPTASEILGEGRVTMRKTAGKPKNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGE 74

Query: 721 FPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFK 542
           FPGDYGWDTAGLSADPETFSKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK
Sbjct: 75  FPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 134

Query: 541 AGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGG 362
           AG+QIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYRIAGGPLGEVVDPLYPGG
Sbjct: 135 AGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGG 194

Query: 361 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 182
           SFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN
Sbjct: 195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254

Query: 181 NAWAFATNFVPGK 143
           NAW+FATNFVPGK
Sbjct: 255 NAWSFATNFVPGK 267


>gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
           cathayensis]
          Length = 267

 Score =  494 bits (1272), Expect = e-137
 Identities = 238/253 (94%), Positives = 247/253 (97%), Gaps = 1/253 (0%)
 Frame = -2

Query: 898 GKAVKLAPSVSELLGEGRITMRKTVGKPKSVSA-SPWYGPDRVKYLGPFSGESPSYLTGE 722
           G+A+KLAPS S+LLGEGR+TMRKT G+PK VS+ SPWYGPDRVKYLGPFSGE PSYLTGE
Sbjct: 15  GQAIKLAPSSSDLLGEGRVTMRKTAGRPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGE 74

Query: 721 FPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFK 542
           FPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFK
Sbjct: 75  FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFK 134

Query: 541 AGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGG 362
           AGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV DP+YPGG
Sbjct: 135 AGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGG 194

Query: 361 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 182
           SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN
Sbjct: 195 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254

Query: 181 NAWAFATNFVPGK 143
           NAWA+ATNFVPGK
Sbjct: 255 NAWAYATNFVPGK 267


>sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
           AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
           Precursor gi|14240|emb|CAA32526.1| chlorophyll a/b
           binding protein precursor [Spinacia oleracea]
           gi|193783447|emb|CAJ77389.3| major chlorophyll a/b
           binding protein LHCb1.3 [Spinacia oleracea]
          Length = 267

 Score =  493 bits (1269), Expect = e-137
 Identities = 238/253 (94%), Positives = 246/253 (97%), Gaps = 1/253 (0%)
 Frame = -2

Query: 898 GKAVKLAPSVSELLGEGRITMRKTVGKPKSV-SASPWYGPDRVKYLGPFSGESPSYLTGE 722
           GKAVKL P+ SE++GEGRITMRKT GKPK+V S+SPWYGPDRVKYLGPFSGESPSYLTGE
Sbjct: 15  GKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGE 74

Query: 721 FPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFK 542
           FPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK
Sbjct: 75  FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 134

Query: 541 AGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGG 362
           AG+QIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYRIAGGPLGEVVDPLYPGG
Sbjct: 135 AGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGG 194

Query: 361 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 182
           SFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN
Sbjct: 195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254

Query: 181 NAWAFATNFVPGK 143
           NAW FATNFVPGK
Sbjct: 255 NAWNFATNFVPGK 267


>emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
           oleracea]
          Length = 267

 Score =  492 bits (1266), Expect = e-137
 Identities = 236/253 (93%), Positives = 246/253 (97%), Gaps = 1/253 (0%)
 Frame = -2

Query: 898 GKAVKLAPSVSELLGEGRITMRKTVGKPKSVSA-SPWYGPDRVKYLGPFSGESPSYLTGE 722
           GKA+KL P+ SE+L EGR+TMRKT GKPK+VS+ SPWYGPDRVKYLGPFSGE+PSYLTGE
Sbjct: 15  GKAIKLGPTASEILSEGRVTMRKTAGKPKNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGE 74

Query: 721 FPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFK 542
           FPGDYGWDTAGLSADPETFSKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK
Sbjct: 75  FPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 134

Query: 541 AGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGG 362
           AG+QIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYRIAGGPLGEVVDPLYPGG
Sbjct: 135 AGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGG 194

Query: 361 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 182
           SFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN
Sbjct: 195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254

Query: 181 NAWAFATNFVPGK 143
           NAW+FATNFVPGK
Sbjct: 255 NAWSFATNFVPGK 267


>gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
          Length = 266

 Score =  491 bits (1264), Expect = e-136
 Identities = 235/253 (92%), Positives = 247/253 (97%), Gaps = 1/253 (0%)
 Frame = -2

Query: 898 GKAVKLAPSVSELLGEGRITMRKTVGKPKSVSA-SPWYGPDRVKYLGPFSGESPSYLTGE 722
           GKAVKLAP+ SE+ GEGR++MRKT GKPK VS+ SPWYGPDRVKYLGPFSGE+PSYLTGE
Sbjct: 14  GKAVKLAPAASEVFGEGRVSMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGE 73

Query: 721 FPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFK 542
           F GDYGWDTAGLSADPETF+KNRELEVIH+RWAMLGALGCVFPELLARNGVKFGEAVWFK
Sbjct: 74  FAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKFGEAVWFK 133

Query: 541 AGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGG 362
           AG+QIFSEGGLDYLGNPSLVHAQSILAIWATQV+LMGAVEGYR+AGGPLGEVVDPLYPGG
Sbjct: 134 AGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRVAGGPLGEVVDPLYPGG 193

Query: 361 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 182
           SFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN
Sbjct: 194 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253

Query: 181 NAWAFATNFVPGK 143
           NAWAFATNFVPGK
Sbjct: 254 NAWAFATNFVPGK 266