BLASTX nr result
ID: Coptis24_contig00001427
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00001427
(715 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002329719.1| predicted protein [Populus trichocarpa] gi|2... 122 5e-46
ref|XP_004136664.1| PREDICTED: uncharacterized protein At2g41620... 120 3e-44
ref|XP_002519809.1| nuclear pore complex protein nup93, putative... 121 7e-44
ref|XP_002317735.1| predicted protein [Populus trichocarpa] gi|2... 119 1e-43
ref|XP_003543674.1| PREDICTED: uncharacterized protein At2g41620... 115 2e-42
>ref|XP_002329719.1| predicted protein [Populus trichocarpa] gi|222870627|gb|EEF07758.1|
predicted protein [Populus trichocarpa]
Length = 863
Score = 122 bits (305), Expect(3) = 5e-46
Identities = 59/83 (71%), Positives = 70/83 (84%), Gaps = 1/83 (1%)
Frame = -3
Query: 713 YTIISGYRRQID*LLGDIATLFNTIEDFLWFKLAPVRDSQGG-GSFVLDEAMVPYTLDNL 537
Y I+SG RRQID LL D+ TLFNTIEDFLWFKL+ V++ GG S VL+E++VPY+L++L
Sbjct: 425 YAIVSGSRRQIDHLLRDLPTLFNTIEDFLWFKLSAVQEYHGGTSSQVLNESLVPYSLEDL 484
Query: 536 QVYLRKFEPSYYTKNGKDPLVYP 468
Q YL KFEPSYYTKNGKDPLVYP
Sbjct: 485 QAYLNKFEPSYYTKNGKDPLVYP 507
Score = 62.8 bits (151), Expect(3) = 5e-46
Identities = 37/94 (39%), Positives = 46/94 (48%)
Frame = -2
Query: 282 LIRQYGAAYLRSANXXXXXXXXXXXXXXXXXXXLSWTRQANSH*QWRKSLMLKQLLLSCC 103
+IRQYG+AYLR N SWT + N Q ++S+MLKQLL
Sbjct: 571 IIRQYGSAYLRHGNLSMALEYYAQAAATVGGGEASWTGRGNIDQQRQRSMMLKQLLTELL 630
Query: 102 YEMAVFLCYLGLGSVGEEGEFRRFLTNRKDQQQF 1
LG GEEGE RFLT+ K++QQF
Sbjct: 631 LRDGGIHLLLGPRGAGEEGELARFLTDSKERQQF 664
Score = 47.0 bits (110), Expect(3) = 5e-46
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = -1
Query: 418 KETRDEGFDIDSVHISIVLADYGVLMEGAGS 326
KE DEG++I++VH+SI LAD+GVL EGAG+
Sbjct: 525 KEAADEGYNINAVHVSIALADHGVLTEGAGA 555
>ref|XP_004136664.1| PREDICTED: uncharacterized protein At2g41620-like [Cucumis sativus]
gi|449494745|ref|XP_004159635.1| PREDICTED:
uncharacterized protein At2g41620-like [Cucumis sativus]
Length = 863
Score = 120 bits (301), Expect(3) = 3e-44
Identities = 60/83 (72%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Frame = -3
Query: 713 YTIISGYRRQID*LLGDIATLFNTIEDFLWFKLAPVRDSQG-GGSFVLDEAMVPYTLDNL 537
Y IISG RRQID LL D+ LFNTIEDFLWF+L+ VR+ G S VL+E VPYTLD+L
Sbjct: 425 YAIISGSRRQIDRLLRDLPMLFNTIEDFLWFQLSAVRNGHGESSSIVLNEGSVPYTLDDL 484
Query: 536 QVYLRKFEPSYYTKNGKDPLVYP 468
Q YL KFEPSYYTKNGKDPLVYP
Sbjct: 485 QFYLNKFEPSYYTKNGKDPLVYP 507
Score = 60.1 bits (144), Expect(3) = 3e-44
Identities = 35/94 (37%), Positives = 46/94 (48%)
Frame = -2
Query: 282 LIRQYGAAYLRSANXXXXXXXXXXXXXXXXXXXLSWTRQANSH*QWRKSLMLKQLLLSCC 103
+IRQYG+ YLR N LSW+ + + Q +++LMLKQLL
Sbjct: 571 IIRQYGSLYLRMGNLSMALEYYAQAAAALGGGQLSWSSRGSMDQQRQRTLMLKQLLTELL 630
Query: 102 YEMAVFLCYLGLGSVGEEGEFRRFLTNRKDQQQF 1
LG GEEGE RRF+T+ K +QQF
Sbjct: 631 LRDGGIYLLLGARGAGEEGELRRFMTDMKSRQQF 664
Score = 45.1 bits (105), Expect(3) = 3e-44
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = -1
Query: 418 KETRDEGFDIDSVHISIVLADYGVLMEGAGS 326
KET +EG +ID+ HISIVLAD GVL EG G+
Sbjct: 525 KETGEEGLNIDAAHISIVLADNGVLSEGTGA 555
>ref|XP_002519809.1| nuclear pore complex protein nup93, putative [Ricinus communis]
gi|223541048|gb|EEF42605.1| nuclear pore complex protein
nup93, putative [Ricinus communis]
Length = 710
Score = 121 bits (303), Expect(3) = 7e-44
Identities = 59/83 (71%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
Frame = -3
Query: 713 YTIISGYRRQID*LLGDIATLFNTIEDFLWFKLAPVRDSQGGGS-FVLDEAMVPYTLDNL 537
Y ++SG RRQID LL D+ TLFNTIEDFLWFKL+ VRD GG S VL+E PY+L++L
Sbjct: 394 YALVSGSRRQIDRLLRDLPTLFNTIEDFLWFKLSAVRDFHGGTSAVVLNEGSAPYSLEDL 453
Query: 536 QVYLRKFEPSYYTKNGKDPLVYP 468
Q YL KFEPSYYTKNGKDPLVYP
Sbjct: 454 QAYLNKFEPSYYTKNGKDPLVYP 476
Score = 56.2 bits (134), Expect(3) = 7e-44
Identities = 35/94 (37%), Positives = 44/94 (46%)
Frame = -2
Query: 282 LIRQYGAAYLRSANXXXXXXXXXXXXXXXXXXXLSWTRQANSH*QWRKSLMLKQLLLSCC 103
+IRQYG+ YLR N +SWT + N Q ++SLMLKQLL
Sbjct: 540 IIRQYGSTYLRRGNLLGALEYYAQAAAAVGGGEVSWTGRGNVDQQRQRSLMLKQLLTELL 599
Query: 102 YEMAVFLCYLGLGSVGEEGEFRRFLTNRKDQQQF 1
LG GEEGE RFL + + +QQF
Sbjct: 600 LRDGGIYLLLGPRGAGEEGELVRFLNDFRVRQQF 633
Score = 47.0 bits (110), Expect(3) = 7e-44
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = -1
Query: 418 KETRDEGFDIDSVHISIVLADYGVLMEGAGS 326
KE DEG+DID+VH++IVLAD+GVL E AG+
Sbjct: 494 KEVADEGYDIDAVHMAIVLADHGVLSEVAGA 524
>ref|XP_002317735.1| predicted protein [Populus trichocarpa] gi|222858408|gb|EEE95955.1|
predicted protein [Populus trichocarpa]
Length = 863
Score = 119 bits (298), Expect(3) = 1e-43
Identities = 58/83 (69%), Positives = 68/83 (81%), Gaps = 1/83 (1%)
Frame = -3
Query: 713 YTIISGYRRQID*LLGDIATLFNTIEDFLWFKLAPVRDSQGGGS-FVLDEAMVPYTLDNL 537
Y ++SG R QID LL D+ TLFNTIEDFLWFKL+ VRD G S VL+E++VPY+L++L
Sbjct: 425 YAVVSGCRWQIDHLLRDLPTLFNTIEDFLWFKLSAVRDYPAGTSTLVLNESLVPYSLEDL 484
Query: 536 QVYLRKFEPSYYTKNGKDPLVYP 468
Q YL KFEPSYYTKNGKDPLVYP
Sbjct: 485 QAYLNKFEPSYYTKNGKDPLVYP 507
Score = 55.8 bits (133), Expect(3) = 1e-43
Identities = 35/94 (37%), Positives = 43/94 (45%)
Frame = -2
Query: 282 LIRQYGAAYLRSANXXXXXXXXXXXXXXXXXXXLSWTRQANSH*QWRKSLMLKQLLLSCC 103
+IRQYG+AYL N SWT + N Q ++SLMLKQLL
Sbjct: 571 IIRQYGSAYLHHGNLSMALEYYAQAAATVGGGETSWTGRGNIDQQRQRSLMLKQLLTELL 630
Query: 102 YEMAVFLCYLGLGSVGEEGEFRRFLTNRKDQQQF 1
LG GEEGE RFL + + +QQF
Sbjct: 631 LRDGGIYFLLGPRGAGEEGELARFLIDFQARQQF 664
Score = 48.5 bits (114), Expect(3) = 1e-43
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = -1
Query: 418 KETRDEGFDIDSVHISIVLADYGVLMEGAGS 326
+E DEG+DID+VHISI LAD+GVL EG G+
Sbjct: 525 REAADEGYDIDAVHISIALADHGVLTEGGGA 555
>ref|XP_003543674.1| PREDICTED: uncharacterized protein At2g41620-like [Glycine max]
Length = 861
Score = 115 bits (288), Expect(3) = 2e-42
Identities = 57/83 (68%), Positives = 65/83 (78%), Gaps = 1/83 (1%)
Frame = -3
Query: 713 YTIISGYRRQID*LLGDIATLFNTIEDFLWFKLAPVRDSQGG-GSFVLDEAMVPYTLDNL 537
Y IISG RR ID LL D +LF+TIEDFLWFKL+ VRD G S VL + ++PY+LD+L
Sbjct: 423 YAIISGSRRHIDRLLRDQPSLFSTIEDFLWFKLSAVRDCPSGPSSIVLSDGLIPYSLDDL 482
Query: 536 QVYLRKFEPSYYTKNGKDPLVYP 468
Q YL KFEPSYYTKNGKDPLVYP
Sbjct: 483 QSYLNKFEPSYYTKNGKDPLVYP 505
Score = 55.1 bits (131), Expect(3) = 2e-42
Identities = 34/94 (36%), Positives = 45/94 (47%)
Frame = -2
Query: 282 LIRQYGAAYLRSANXXXXXXXXXXXXXXXXXXXLSWTRQANSH*QWRKSLMLKQLLLSCC 103
+IRQYG+ YLR + LSWT + N Q +++LM+KQLL
Sbjct: 569 IIRQYGSMYLRLGDLQMALEYFAQAAAAVGGGELSWTGRGNVDQQRQRNLMVKQLLTELL 628
Query: 102 YEMAVFLCYLGLGSVGEEGEFRRFLTNRKDQQQF 1
LG GEEGE RF+T+ K +QQF
Sbjct: 629 LRDGGIYLLLGARGTGEEGELGRFVTDPKARQQF 662
Score = 49.3 bits (116), Expect(3) = 2e-42
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = -1
Query: 418 KETRDEGFDIDSVHISIVLADYGVLMEGAGS 326
KE DEG++ID+ H+SIVLAD+GVL EGAGS
Sbjct: 523 KEAGDEGYNIDAAHLSIVLADHGVLSEGAGS 553