BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001371
         (1281 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263449.1| PREDICTED: ribosome-recycling factor [Vitis ...   236   9e-60
emb|CAN68423.1| hypothetical protein VITISV_018268 [Vitis vinifera]   235   2e-59
ref|XP_002298606.1| predicted protein [Populus trichocarpa] gi|2...   229   1e-57
dbj|BAD44436.1| putative ribosome recycling factor [Arabidopsis ...   225   2e-56
ref|NP_186829.3| ribosome recycling factor [Arabidopsis thaliana...   225   2e-56

>ref|XP_002263449.1| PREDICTED: ribosome-recycling factor [Vitis vinifera]
            gi|296090242|emb|CBI40061.3| unnamed protein product
            [Vitis vinifera]
          Length = 258

 Score =  236 bits (602), Expect = 9e-60
 Identities = 131/229 (57%), Positives = 158/229 (68%)
 Frame = -3

Query: 1018 TPTLGANKESSTQLLGFQFLKETRRGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEP 839
            +P+L  +  S+       FL+E+RRGFA                                
Sbjct: 34   SPSLNPSASSA-----LDFLRESRRGFAKGRKSKDSDAGNTVEVVPDIGPA--------- 79

Query: 838  IKPTAISQMEAALVALSRELSKIQTGRASAGLIDHIIVETGGAKMPLSRIAXXXXXXXXX 659
            +K  A+SQM+AA+VALSRELSK++TGRASAG++DHIIVETGG KMPLSR+A         
Sbjct: 80   VKENAMSQMDAAVVALSRELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKT 139

Query: 658  XXVTPYDPNASKEIERAIMSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDV 479
              VTPYD +A K++E AI+SSPLGLNP+ DG+RLI  I PLTKE IQAMCKVV KS +DV
Sbjct: 140  LSVTPYDLDALKQLENAIVSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDV 199

Query: 478  KQSIRRARQKAFDIIKKAASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 332
            KQSIRRARQKA D+IKKA SS+PKD  KRLEKEVD+LTKK++KSAEDMC
Sbjct: 200  KQSIRRARQKALDMIKKAGSSLPKDVAKRLEKEVDELTKKFVKSAEDMC 248


>emb|CAN68423.1| hypothetical protein VITISV_018268 [Vitis vinifera]
          Length = 258

 Score =  235 bits (600), Expect = 2e-59
 Identities = 131/229 (57%), Positives = 157/229 (68%)
 Frame = -3

Query: 1018 TPTLGANKESSTQLLGFQFLKETRRGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEP 839
            +P+L  +  S+       FL+E+RRGFA                                
Sbjct: 34   SPSLNPSASSA-----LDFLRESRRGFAKGRKSKDSDAGNTVEVVPDIGPA--------- 79

Query: 838  IKPTAISQMEAALVALSRELSKIQTGRASAGLIDHIIVETGGAKMPLSRIAXXXXXXXXX 659
            +K  A+SQM+AA+VALSRELSK++TGRASAG++DHIIVETGG KMPLSR+A         
Sbjct: 80   VKENAMSQMDAAVVALSRELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKT 139

Query: 658  XXVTPYDPNASKEIERAIMSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDV 479
              VTPYD +A K++E AI+SSPLGLNP+ DG+RLI  I PLTKE IQAMCKVV KS +DV
Sbjct: 140  LSVTPYDLDALKQLENAIVSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDV 199

Query: 478  KQSIRRARQKAFDIIKKAASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 332
            KQSIRRARQKA D IKKA SS+PKD  KRLEKEVD+LTKK++KSAEDMC
Sbjct: 200  KQSIRRARQKALDXIKKAGSSLPKDVAKRLEKEVDELTKKFVKSAEDMC 248


>ref|XP_002298606.1| predicted protein [Populus trichocarpa] gi|222845864|gb|EEE83411.1|
            predicted protein [Populus trichocarpa]
          Length = 273

 Score =  229 bits (584), Expect = 1e-57
 Identities = 124/224 (55%), Positives = 150/224 (66%)
 Frame = -3

Query: 1003 ANKESSTQLLGFQFLKETRRGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPIKPTA 824
            ++K  S  L  F FLK++RRGFA                                +K TA
Sbjct: 49   SHKLPSATLPSFDFLKQSRRGFAKGKNKSKDDSAGGTVEFVDIGPT---------VKETA 99

Query: 823  ISQMEAALVALSRELSKIQTGRASAGLIDHIIVETGGAKMPLSRIAXXXXXXXXXXXVTP 644
             SQM+AA+VALSREL K++TGRASAG++DHIIVET G K+PL+R A           V P
Sbjct: 100  NSQMDAAVVALSRELQKLRTGRASAGMLDHIIVETDGVKLPLNRSAVVSVMDAKTLSVNP 159

Query: 643  YDPNASKEIERAIMSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDVKQSIR 464
            YDPN  K++E AI+SSPLGLNPQ DG RLI AI PLTKE  QAMCKVV KS +D +QSIR
Sbjct: 160  YDPNTLKQLENAIVSSPLGLNPQRDGDRLIAAIPPLTKEHTQAMCKVVAKSCEDCRQSIR 219

Query: 463  RARQKAFDIIKKAASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 332
            RARQKA D +KKA SS PKDD K+LEKE++++TKK++KSAEDMC
Sbjct: 220  RARQKAMDTVKKAGSSFPKDDAKKLEKEIEEMTKKFVKSAEDMC 263


>dbj|BAD44436.1| putative ribosome recycling factor [Arabidopsis thaliana]
          Length = 267

 Score =  225 bits (573), Expect = 2e-56
 Identities = 111/169 (65%), Positives = 140/169 (82%)
 Frame = -3

Query: 838 IKPTAISQMEAALVALSRELSKIQTGRASAGLIDHIIVETGGAKMPLSRIAXXXXXXXXX 659
           +K  A SQMEAA+ ALSR+L+K++TGRA+ G++DHI+VETGG KMPL+ +A         
Sbjct: 89  VKAAASSQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKT 148

Query: 658 XXVTPYDPNASKEIERAIMSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDV 479
             V PYDP+  KE+E+AI++SPLGLNP++DGQRL+ +I  LTKE IQAMCK+VTKS++ V
Sbjct: 149 LSVNPYDPDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVV 208

Query: 478 KQSIRRARQKAFDIIKKAASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 332
           KQSIRRARQKA D IKKA SS+PKD+VKRLEKEVD+LTKK++KSAEDMC
Sbjct: 209 KQSIRRARQKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMC 257


>ref|NP_186829.3| ribosome recycling factor [Arabidopsis thaliana]
           gi|34146850|gb|AAQ62433.1| At3g01800 [Arabidopsis
           thaliana] gi|51970776|dbj|BAD44080.1| putative ribosome
           recycling factor [Arabidopsis thaliana]
           gi|62319213|dbj|BAD94407.1| putative ribosome recycling
           factor [Arabidopsis thaliana]
           gi|332640195|gb|AEE73716.1| ribosome recycling factor
           [Arabidopsis thaliana]
          Length = 267

 Score =  225 bits (573), Expect = 2e-56
 Identities = 111/169 (65%), Positives = 140/169 (82%)
 Frame = -3

Query: 838 IKPTAISQMEAALVALSRELSKIQTGRASAGLIDHIIVETGGAKMPLSRIAXXXXXXXXX 659
           +K  A SQMEAA+ ALSR+L+K++TGRA+ G++DHI+VETGG KMPL+ +A         
Sbjct: 89  VKAAASSQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKT 148

Query: 658 XXVTPYDPNASKEIERAIMSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDV 479
             V PYDP+  KE+E+AI++SPLGLNP++DGQRL+ +I  LTKE IQAMCK+VTKS++ V
Sbjct: 149 LSVNPYDPDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVV 208

Query: 478 KQSIRRARQKAFDIIKKAASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 332
           KQSIRRARQKA D IKKA SS+PKD+VKRLEKEVD+LTKK++KSAEDMC
Sbjct: 209 KQSIRRARQKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMC 257