BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001247
         (1564 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF17675.1|AC009243_2 F28K19.3 [Arabidopsis thaliana]               70   1e-09
gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group...    60   1e-06
gb|AAO00713.1| retrotransposon protein, putative, unclassified [...    60   2e-06
gb|AAP54692.2| retrotransposon protein, putative, unclassified [...    60   2e-06
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...    60   2e-06

>gb|AAF17675.1|AC009243_2 F28K19.3 [Arabidopsis thaliana]
          Length = 238

 Score = 70.5 bits (171), Expect = 1e-09
 Identities = 36/99 (36%), Positives = 58/99 (58%)
 Frame = +2

Query: 992  WNCRGISSSTTIQNLKDLIGRFDPDIICLSETKVGSDRMQGISRMVKYMGCFCVPAVGLS 1171
            WNC+G+    T++ LK++  ++ PD+ICLSETK  +D ++     + +     VP++GLS
Sbjct: 59   WNCQGLGIDLTVRRLKEINRKYLPDVICLSETKQRNDYVRDTCCELGFSNFVMVPSMGLS 118

Query: 1172 GRLVVLWKEGVDLEILGATRNQVTGYFRRGSSWNNSLGF 1288
            G LVVLWK  V + +   + N V  Y +     +N +GF
Sbjct: 119  GGLVVLWKPSVHISVSFNSPNLVDCYVQ-----SNEVGF 152


>gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group]
            gi|54291856|gb|AAV32224.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1936

 Score = 60.5 bits (145), Expect = 1e-06
 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
 Frame = +2

Query: 992  WNCRGISSSTTIQNLKDLIGRFDPDIICLSETKVGSDRMQGISRMVKYMGCFCVPAVGLS 1171
            WNCRG+ ++ T+Q+L+ LI +    ++ L ET+   ++M  + R + + G   V + G S
Sbjct: 641  WNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMSRLRRKLAFRGFVGVSSEGKS 700

Query: 1172 GRLVVLWKEGVDLEILGATRNQVTGYFRRG---SSWNNSLGFRRESSRGRHQ 1318
            G L + W E V +++    +  +  Y R       W+ +  +       RH+
Sbjct: 701  GGLALYWDESVSVDVKDINKRYIDAYVRLSPDEPQWHITFVYGEPRVENRHR 752


>gb|AAO00713.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1557

 Score = 60.1 bits (144), Expect = 2e-06
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
 Frame = +2

Query: 989  TWNCRGISSSTTIQNLKDLIGRFDPDIICLSETKVGSDRMQGISRMVKYMGCFCVPAVGL 1168
            +WNCRGI ++TT+Q L  L+       + L ET+   D+++ +   +   G   V + G+
Sbjct: 438  SWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGVSSDGM 497

Query: 1169 SGRLVVLWKEGVDLEILGATRNQVTGYFRRGSS---WNNSLGFRRESSRGRHQ 1318
            SG L + W E V +EIL      +  Y R   +   W+ +  +       RH+
Sbjct: 498  SGGLALFWHESVHVEILNKNERFIDAYIRLSPNDPLWHATFVYGEPRVENRHK 550


>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1585

 Score = 60.1 bits (144), Expect = 2e-06
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
 Frame = +2

Query: 989  TWNCRGISSSTTIQNLKDLIGRFDPDIICLSETKVGSDRMQGISRMVKYMGCFCVPAVGL 1168
            +WNCRGI ++TT+Q L  L+       + L ET+   D+++ +   +   G   V + G+
Sbjct: 466  SWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGVSSDGM 525

Query: 1169 SGRLVVLWKEGVDLEILGATRNQVTGYFRRGSS---WNNSLGFRRESSRGRHQ 1318
            SG L + W E V +EIL      +  Y R   +   W+ +  +       RH+
Sbjct: 526  SGGLALFWHESVHVEILNKNERFIDAYIRLSPNDPLWHATFVYGEPRVENRHK 578


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 59.7 bits (143), Expect = 2e-06
 Identities = 27/94 (28%), Positives = 51/94 (54%)
 Frame = +2

Query: 983  IQTWNCRGISSSTTIQNLKDLIGRFDPDIICLSETKVGSDRMQGISRMVKYMGCFCVPAV 1162
            I  WNCRG+ +  +++ L+    +F PDII +SET +    ++ +   + +   F V +V
Sbjct: 3    ILCWNCRGLGNPWSVRQLRSWSNQFAPDIIFVSETMINKIEVEALKSWLGFSNAFGVASV 62

Query: 1163 GLSGRLVVLWKEGVDLEILGATRNQVTGYFRRGS 1264
            G +G L + WKE V   ++  +++ + G    G+
Sbjct: 63   GRAGGLCLYWKEEVMFSLVSFSQHHICGDVEDGN 96