BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001234
         (3636 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein...  1531   0.0  
ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein...  1456   0.0  
ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein...  1454   0.0  
ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein...  1438   0.0  
ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa]...  1419   0.0  

>ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis
            vinifera] gi|297738576|emb|CBI27821.3| unnamed protein
            product [Vitis vinifera]
          Length = 1091

 Score = 1531 bits (3963), Expect = 0.0
 Identities = 792/1096 (72%), Positives = 906/1096 (82%), Gaps = 6/1096 (0%)
 Frame = -3

Query: 3541 MGCVYIPVQHSDEEVRVVLNQLPLDANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQ 3362
            M  VYIPVQ+S+EEVRV L+QLP DA+DILDILKAEQA LDLWLIIAREYFKQG ++QF+
Sbjct: 1    MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFR 60

Query: 3361 QILEEGSSPEIDEYYADVKYDRIAILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKA 3182
            QILEEGSSPEIDEYYADV+Y+RIAILNALGAY+SYLGK E+K  +K++HFI AT+YYNKA
Sbjct: 61   QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 3181 SRIDIHEPSTWVGKGQLLLAKGDLEQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSD 3002
            SRID+HE STWVGKGQLLLAKGD+EQA  AFKIVLDG++DNVPALLGQACV+F+RGRYSD
Sbjct: 121  SRIDMHEASTWVGKGQLLLAKGDVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180

Query: 3001 SLELYKRALKVYPSCPGAVRLGIGLCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLM 2822
            SL+LYKRAL+VYP CP AVR+GIGLC YKLGQF+KAR+AFQRVLQLDP+NVEALVALG+M
Sbjct: 181  SLDLYKRALQVYPDCPAAVRVGIGLCCYKLGQFEKARKAFQRVLQLDPENVEALVALGIM 240

Query: 2821 DLQINKGDEIQKGMEKMQAAFEIYPYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEP 2642
            DL  N    I+KGMEKMQ AFEIYPYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  
Sbjct: 241  DLHTNDASGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300

Query: 2641 GLQKSHSFYNLARSYHTKGDYEKAGFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRG 2462
            G  KSHS+YNLARSYH+KGDYEKAG YYMASVKE ++PHDFVLPYYGLGQVQLKLGDFR 
Sbjct: 301  GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLPYYGLGQVQLKLGDFRS 360

Query: 2461 SLSNFEKVLEVYPENGESLRVVGHIYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELL 2282
            SLSNFEKVLEVYPEN E+L+ +GHIYVQLGQTEKA + LRKAT+IDPRDAQAFL+LGELL
Sbjct: 361  SLSNFEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELL 420

Query: 2281 ISSDAGAALDAFKTARSLLKKSGGKAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVW 2102
            I+SD GAALDAFKTAR LLKK G + PIELLNNIGVL+F++G+FELA+QTFKEA+G+G+W
Sbjct: 421  ITSDTGAALDAFKTARGLLKKGGEEVPIELLNNIGVLYFERGEFELAEQTFKEAVGDGIW 480

Query: 2101 LDLVDGKFCSSAVDS----DQFCDMQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHD 1934
            L  +D K  S A D+      F DMQLF +L+E G  VEL W+KVT LFN ARLLEQL++
Sbjct: 481  LSFIDDKAYSYANDARTSMHHFKDMQLFHQLEEDGHFVELPWNKVTVLFNLARLLEQLNN 540

Query: 1933 AEKASILYRLILFKYPDYQDAYLRLAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLG 1754
             + ASILYRLILFK+PDY DAYLRLAAIAK+RNNIQLSIEL+G+A+KVN+K P++L MLG
Sbjct: 541  TKTASILYRLILFKFPDYIDAYLRLAAIAKARNNIQLSIELVGDALKVNDKGPNSLCMLG 600

Query: 1753 ALELKNDDWLKAKETFRAAREATDGKDSYSALSLGNWNYFAAARSEKKGAKLEATHLEKA 1574
             LELKNDDW+KAKETFR+A +ATDGKDSY+ LSLGNWNYFAA RSEK+  KLEATHLEKA
Sbjct: 601  DLELKNDDWVKAKETFRSASDATDGKDSYATLSLGNWNYFAAIRSEKRAPKLEATHLEKA 660

Query: 1573 KELYTKVLVQHPANLYAANGAAVVLAEKGQFDVSKEIFTQVQEAASGSIFVQMPDVWINL 1394
            KELYT+VLVQH ANLYAANGA VVLAEKG FDVSK+IFTQVQEAASGS+FVQMPDVWINL
Sbjct: 661  KELYTRVLVQHNANLYAANGAGVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 720

Query: 1393 AHVYFAQGQFTSAVKMYQNCLRKFYYSTDTQVLLYLARTHYEAEQWQDCKKTLLRAIHLA 1214
            AHVYFAQG F  AVKMYQNCLRKFYY+TD+QVLLYLARTHYEAEQWQDCKKTLLRAIHLA
Sbjct: 721  AHVYFAQGNFALAVKMYQNCLRKFYYNTDSQVLLYLARTHYEAEQWQDCKKTLLRAIHLA 780

Query: 1213 PSNYTLRFDAGVALQKFSASTLQKTKKTADEVRSTVAELKNAVRVFSQLSAASNHHIHGF 1034
            PSNYTLRFDAGVA+QKFSASTLQKTK+TADEVRSTVAELKNAVR+FSQLSAASN H HGF
Sbjct: 781  PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELKNAVRIFSQLSAASNLHFHGF 840

Query: 1033 DEKKIETHVGYCKHLLDAAKVHCXXXXXXXXXXXXXXEVARQVXXXXXXXXXXXXXRKYQ 854
            DEKKIETHVGYCKHLL+AAKVHC              E+ARQV             RK+Q
Sbjct: 841  DEKKIETHVGYCKHLLEAAKVHCEAAEREELQNRHRVELARQVNLAEEARRKAEEQRKFQ 900

Query: 853  LEKRKQEDEIXXXXXXXXXXXXXXXXXKSSTPASKRKDRSHADDEEGGHSENXXXXXXXX 674
            LE+RKQEDE+                 KS+   SKRK+RS  DD+EGG SE         
Sbjct: 901  LERRKQEDELKRVMQQEQHFERVKEQWKSNNLNSKRKERSQIDDDEGGQSER-RRRKGGK 959

Query: 673  XXXXXKPQYEMDEVEPNTMYEXXXXXXXXDTNLVNNHEKDKDQMNRQENDGEENTQDLLA 494
                 K +Y+ +E   + M +        DTN+  NH +  +QMN Q++DGE++ QDLLA
Sbjct: 960  RRKKDKSRYDSEEARADAM-DDQDEMEDEDTNM--NHRESTNQMNNQDDDGEDDAQDLLA 1016

Query: 493  AAGLEDSDVEDDMNDPPSTKYRRKRALSDSDEDEPSDRKAESGQNRESLAE-PESDGEFR 317
            AAGLEDSD EDDM   PS+  RRKRA S+SDEDEP D++ ES   RE+ AE  ESDGE +
Sbjct: 1017 AAGLEDSDAEDDMAG-PSSGNRRKRAWSESDEDEPQDQRPESSPVRENSAEVQESDGEIK 1075

Query: 316  -EKEELHRDTYEEDED 272
             + ++ + D  E+DED
Sbjct: 1076 DDNDKPNGDAAEDDED 1091


>ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
            max]
          Length = 1088

 Score = 1456 bits (3770), Expect = 0.0
 Identities = 752/1094 (68%), Positives = 881/1094 (80%), Gaps = 5/1094 (0%)
 Frame = -3

Query: 3541 MGCVYIPVQHSDEEVRVVLNQLPLDANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQ 3362
            M  VYIPVQ+S+EEVRV L+QLP DA+DILDILKAEQA LDLWLIIAREYFKQG ++Q++
Sbjct: 1    MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQYR 60

Query: 3361 QILEEGSSPEIDEYYADVKYDRIAILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKA 3182
            QILEEGSSPEIDEYYADV+Y+RIAILNALGAY+SYLGK E+K  +K++HFI AT+YYNKA
Sbjct: 61   QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 3181 SRIDIHEPSTWVGKGQLLLAKGDLEQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSD 3002
            SRID+HEPSTWVGKGQLLLAKG++EQAS AFKIVLDG+ DNVPALLGQACV+F+RGR+SD
Sbjct: 121  SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDHDNVPALLGQACVEFNRGRFSD 180

Query: 3001 SLELYKRALKVYPSCPGAVRLGIGLCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLM 2822
            SLELYKR L+VYP+CP AVRLGIGLCRYKLGQF+KA+QAF+RVLQLDP+NVE+L+AL +M
Sbjct: 181  SLELYKRVLQVYPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVESLIALAIM 240

Query: 2821 DLQINKGDEIQKGMEKMQAAFEIYPYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEP 2642
            DL+ N+   I+ GM KMQ AFEIYPYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  
Sbjct: 241  DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300

Query: 2641 GLQKSHSFYNLARSYHTKGDYEKAGFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRG 2462
            G  KSHS+YNLARSYH+KGDY+KAG YYMASVKE+++PH+FV PYYGLGQVQ+KLGDF+ 
Sbjct: 301  GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 360

Query: 2461 SLSNFEKVLEVYPENGESLRVVGHIYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELL 2282
            +LSNFEKVLEVYP+N E+L+ +GHIYVQLGQT+K  D +RKAT+IDPRDAQAFLELGELL
Sbjct: 361  ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 420

Query: 2281 ISSDAGAALDAFKTARSLLKKSGGKAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVW 2102
            I SD GAALDAFKTA +L KK G + PIELLNNIGVL F++G+FELA+QTFKEALG+GVW
Sbjct: 421  ILSDTGAALDAFKTAHTLFKKGGQEVPIELLNNIGVLQFERGEFELARQTFKEALGDGVW 480

Query: 2101 LDLVDGKFCSS---AVDSDQFCDMQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHDA 1931
            L  ++ +  SS   A  + QF DMQLF  L+  G  VE+ WDKVT LFN ARLLEQL+D+
Sbjct: 481  LSFINEENKSSIDAATSTLQFKDMQLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLYDS 540

Query: 1930 EKASILYRLILFKYPDYQDAYLRLAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLGA 1751
              ASI YRLILFKYPDY DAYLRLAAIAK+RNNI LSIEL+ +A+KVN KCP+ALSMLG 
Sbjct: 541  GTASIFYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLGE 600

Query: 1750 LELKNDDWLKAKETFRAAREATDGKDSYSALSLGNWNYFAAARSEKKGAKLEATHLEKAK 1571
            LELKNDDW+KAKET R A +ATDGKDSY+ LSLGNWNYFAA R+EK+  KLEATHLEKAK
Sbjct: 601  LELKNDDWVKAKETLRTASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAK 660

Query: 1570 ELYTKVLVQHPANLYAANGAAVVLAEKGQFDVSKEIFTQVQEAASGSIFVQMPDVWINLA 1391
            EL T+VL+QH +NLYAANGAAVVLAEKG FDVSK+IFTQVQEAASGS+FVQMPDVWINLA
Sbjct: 661  ELCTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLA 720

Query: 1390 HVYFAQGQFTSAVKMYQNCLRKFYYSTDTQVLLYLARTHYEAEQWQDCKKTLLRAIHLAP 1211
            HVYFAQG FT AVKMYQNCLRKFY++TD+Q+LLYLARTHYEAEQWQDC KTLLRAIHLAP
Sbjct: 721  HVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAP 780

Query: 1210 SNYTLRFDAGVALQKFSASTLQKTKKTADEVRSTVAELKNAVRVFSQLSAASNHHIHGFD 1031
            SNYTLRFDAGVA+QKFSASTLQK K+TADEVR+TVAEL+NAVRVFSQLSAASN HIHGFD
Sbjct: 781  SNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFD 840

Query: 1030 EKKIETHVGYCKHLLDAAKVHCXXXXXXXXXXXXXXEVARQVXXXXXXXXXXXXXRKYQL 851
            EKKI+THVGYC HLL AAKVH               E+ARQV             RK+Q+
Sbjct: 841  EKKIDTHVGYCNHLLSAAKVHLEAAEHEEQQVRQRQELARQVALAEEARRKAEEQRKFQM 900

Query: 850  EKRKQEDEIXXXXXXXXXXXXXXXXXKSSTPASKRKDRSHADDEEGGHSENXXXXXXXXX 671
            E+RKQEDE+                 KSS+  SKR++RS  DDEEGG  E          
Sbjct: 901  ERRKQEDELKRVQKQEEHFRRVKEQWKSSS-HSKRRERS--DDEEGGTGEKKRKKGGKRR 957

Query: 670  XXXXKP--QYEMDEVEPNTMYEXXXXXXXXDTNLVNNHEKDKDQMNRQENDGEENTQDLL 497
                    +Y+ +E E + M E        D   +N  E+ + QMN   +D EEN Q LL
Sbjct: 958  KKDKHSKLRYDAEEPEDDLMDEQGMEDEEAD---INYREEPQTQMN---DDAEENAQGLL 1011

Query: 496  AAAGLEDSDVEDDMNDPPSTKYRRKRALSDSDEDEPSDRKAESGQNRESLAEPESDGEFR 317
            AAAGLEDSD +++   P S+  RR++ALS+SD+DEP  ++  S   + S     SDGE R
Sbjct: 1012 AAAGLEDSDADEETAAPSSSIARRRQALSESDDDEPLLQRQSSPVRQNSADMQLSDGEIR 1071

Query: 316  EKEELHRDTYEEDE 275
            + ++ + D   ++E
Sbjct: 1072 DGDKTNGDDGNDEE 1085


>ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
            max]
          Length = 1086

 Score = 1454 bits (3765), Expect = 0.0
 Identities = 754/1095 (68%), Positives = 883/1095 (80%), Gaps = 6/1095 (0%)
 Frame = -3

Query: 3541 MGCVYIPVQHSDEEVRVVLNQLPLDANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQ 3362
            M  VYIPVQ+S+EEVRV L+QLP DA+DILDILKAEQA LDLWL+IAREYFKQG ++QF+
Sbjct: 1    MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLVIAREYFKQGKIDQFR 60

Query: 3361 QILEEGSSPEIDEYYADVKYDRIAILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKA 3182
            QILEEGSSPEID+YYADV+Y+RIAILNALGAY+SYLGK E+K  +K++HFI AT+YYNKA
Sbjct: 61   QILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 3181 SRIDIHEPSTWVGKGQLLLAKGDLEQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSD 3002
            SRID+HEPSTWVGKGQLLLAKG++EQAS AFKIVLDG++DNVPALLGQACV+F+RGRYSD
Sbjct: 121  SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180

Query: 3001 SLELYKRALKVYPSCPGAVRLGIGLCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLM 2822
            SLELYKRAL VYP CP AVRLGIGLCRYKLGQF+KA+QAF+R   LDP+NVEALVAL +M
Sbjct: 181  SLELYKRALLVYPDCPAAVRLGIGLCRYKLGQFEKAQQAFER---LDPENVEALVALAIM 237

Query: 2821 DLQINKGDEIQKGMEKMQAAFEIYPYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEP 2642
            DL+ N+   I+ GM KMQ AFEIYPYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  
Sbjct: 238  DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297

Query: 2641 GLQKSHSFYNLARSYHTKGDYEKAGFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRG 2462
            G  KSHS+YNLARSYH+KGDY+KAG YYMASVKE+++PH+FV PYYGLGQVQ+KLGDF+ 
Sbjct: 298  GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 357

Query: 2461 SLSNFEKVLEVYPENGESLRVVGHIYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELL 2282
            +LSNFEKVLEVYP+N E+L+ +GHIYVQLGQT+K  D +RKAT+IDPRDAQAFLELGELL
Sbjct: 358  ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 417

Query: 2281 ISSDAGAALDAFKTARSLLKKSGGKAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVW 2102
            I SD GAALDAFKTAR+L KK G + PIELLNNIGVL F++G+FELA+QTFKEALG+GVW
Sbjct: 418  ILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAQQTFKEALGDGVW 477

Query: 2101 LDLVDGKFCSS---AVDSDQFCDMQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHDA 1931
            L  ++ +  SS   A  + QF DM+LF  L+  G  VE+ WDKVT LFN ARLLEQL+D+
Sbjct: 478  LSFINEEKKSSIDAATSTLQFKDMKLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLNDS 537

Query: 1930 EKASILYRLILFKYPDYQDAYLRLAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLGA 1751
              ASILYRL+LFKYPDY DAYLRLAAIAK+RNNI LSIEL+ +A+KVN KCP+ALSMLG 
Sbjct: 538  GTASILYRLVLFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLGE 597

Query: 1750 LELKNDDWLKAKETFRAAREATDGKDSYSALSLGNWNYFAAARSEKKGAKLEATHLEKAK 1571
            LELKNDDW+KAKET RAA +AT+GKDSY++LSLGNWNYFAA R+EK+  KLEATHLEKAK
Sbjct: 598  LELKNDDWVKAKETLRAASDATEGKDSYASLSLGNWNYFAAVRNEKRNPKLEATHLEKAK 657

Query: 1570 ELYTKVLVQHPANLYAANGAAVVLAEKGQFDVSKEIFTQVQEAASGSIFVQMPDVWINLA 1391
            ELYT+VL+QH +NLYAANGAAVVLAEKG FDVSK+IFTQVQEAASGS+FVQMPDVWINLA
Sbjct: 658  ELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLA 717

Query: 1390 HVYFAQGQFTSAVKMYQNCLRKFYYSTDTQVLLYLARTHYEAEQWQDCKKTLLRAIHLAP 1211
            HVYFAQG FT AVKMYQNCLRKFY++TD+Q+LLYLARTHYEAEQWQDC KTLLRAIHLAP
Sbjct: 718  HVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAP 777

Query: 1210 SNYTLRFDAGVALQKFSASTLQKTKKTADEVRSTVAELKNAVRVFSQLSAASNHHIHGFD 1031
            SNYTLRFDAGVA+QKFSASTLQK K+TADEVR+TVAEL+NAVRVFSQLSAASN HIHGFD
Sbjct: 778  SNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFD 837

Query: 1030 EKKIETHVGYCKHLLDAAKVHCXXXXXXXXXXXXXXEVARQVXXXXXXXXXXXXXRKYQL 851
            EKKI+THVGYC HLL AAKVH               E+ARQV             RK+Q+
Sbjct: 838  EKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVAFAEEARRKAEEQRKFQM 897

Query: 850  EKRKQEDEIXXXXXXXXXXXXXXXXXKSSTPASKRKDRSHADDEEG---GHSENXXXXXX 680
            E+RKQEDE+                 KSS+  SKR++RS  DDEEG   G  +       
Sbjct: 898  ERRKQEDELKRVQQQEEHFRRVKEQWKSSS-HSKRRERS--DDEEGGGTGEKKRKKGGKR 954

Query: 679  XXXXXXXKPQYEMDEVEPNTMYEXXXXXXXXDTNLVNNHEKDKDQMNRQENDGEENTQDL 500
                   K +Y+ +E E + M E        D   +N  E+ + QMN   +D EEN Q L
Sbjct: 955  RKKDKHSKSRYDTEEPENDMMDEQEMEDEEAD---INYREEPQTQMN---DDAEENAQGL 1008

Query: 499  LAAAGLEDSDVEDDMNDPPSTKYRRKRALSDSDEDEPSDRKAESGQNRESLAEPESDGEF 320
            LAAAGLEDSD +++   P S+  RR++ALS+SD+DEP  ++  S     S     SDGE 
Sbjct: 1009 LAAAGLEDSDADEEAPAPSSSIARRRQALSESDDDEPLIQRQSSPARENSADMQLSDGEI 1068

Query: 319  REKEELHRDTYEEDE 275
            R+ ++ + D   E+E
Sbjct: 1069 RDGDKTNGDDGSEEE 1083


>ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Cucumis
            sativus]
          Length = 1074

 Score = 1438 bits (3722), Expect = 0.0
 Identities = 743/1084 (68%), Positives = 867/1084 (79%), Gaps = 9/1084 (0%)
 Frame = -3

Query: 3541 MGCVYIPVQHSDEEVRVVLNQLPLDANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQ 3362
            M CVYIPVQ+S+EEVRV L+QLP DA+DILDILKAEQA LDLWLIIAREYFKQG +EQF+
Sbjct: 1    MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60

Query: 3361 QILEEGSSPEIDEYYADVKYDRIAILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKA 3182
            QILEEGSSPEIDEYYADV+Y+RIAILNALGAY+SYLGK E+K  +K++HFI AT+YYNKA
Sbjct: 61   QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 3181 SRIDIHEPSTWVGKGQLLLAKGDLEQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSD 3002
            SRID+HEPSTWVGKGQLLL KG++EQA  AFKIVLDG++DNVPALLGQACV+F+RG YS+
Sbjct: 121  SRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHYSE 180

Query: 3001 SLELYKRALKVYPSCPGAVRLGIGLCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLM 2822
            SLELYKRAL+VYP CP AVRLGIGLCRY+L Q+ KA+QAF+R   LDP+NVEALV L ++
Sbjct: 181  SLELYKRALQVYPDCPAAVRLGIGLCRYQLKQYGKAQQAFER---LDPENVEALVGLAII 237

Query: 2821 DLQINKGDEIQKGMEKMQAAFEIYPYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEP 2642
            DL  N+   I+ GMEKMQ AFEIYP+CA+AL YLANHFFFTG+H  VE+LT+TALA++  
Sbjct: 238  DLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHFLVEQLTETALAITNH 297

Query: 2641 GLQKSHSFYNLARSYHTKGDYEKAGFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRG 2462
            G  KSHSFYNLARSYH+KGDYEKAG YYMAS KE ++P +FV PYYGLGQVQLK+GD R 
Sbjct: 298  GPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRS 357

Query: 2461 SLSNFEKVLEVYPENGESLRVVGHIYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELL 2282
            +LSNFEKVLEVYP+N E+L+V+GHIYVQLGQ EKA + LRKAT+IDPRDAQAFL+LGELL
Sbjct: 358  ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELL 417

Query: 2281 ISSDAGAALDAFKTARSLLKKSGGKAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVW 2102
            IS+D  AALDAFKTA  LLKK G + PIE+LNN+GVLHF++ +FELA++ FKEALG+G+W
Sbjct: 418  ISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALGDGIW 477

Query: 2101 LDLVDGKFCSSAVDSD----QFCDMQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHD 1934
            LD +DGK    A+++     Q+ D++LF +L+  G  + L W KVT+LFN ARLLEQLH 
Sbjct: 478  LDFIDGKVRCPAIEASASVLQYKDVELFYQLEREGRAIVLPWKKVTSLFNLARLLEQLHR 537

Query: 1933 AEKASILYRLILFKYPDYQDAYLRLAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLG 1754
             E +S+LYRLILFKYPDY DAYLRLA+IAK+RN +QLSIEL+ +A+KVN+KC +ALSMLG
Sbjct: 538  IEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDALKVNDKCSNALSMLG 597

Query: 1753 ALELKNDDWLKAKETFRAAREATDGKDSYSALSLGNWNYFAAARSEKKGAKLEATHLEKA 1574
             LELKNDDW++AKETFRAA EATDGKDSY+ LSLGNWNYFAA R+EK+  KLEATHLEK+
Sbjct: 598  ELELKNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRNEKRNPKLEATHLEKS 657

Query: 1573 KELYTKVLVQHPANLYAANGAAVVLAEKGQFDVSKEIFTQVQEAASGSIFVQMPDVWINL 1394
            KELYT+VLVQHPANLYAANGA V+LAEKGQFDVSK+IFTQVQEAASG+IFVQMPDVWINL
Sbjct: 658  KELYTRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAASGNIFVQMPDVWINL 717

Query: 1393 AHVYFAQGQFTSAVKMYQNCLRKFYYSTDTQVLLYLARTHYEAEQWQDCKKTLLRAIHLA 1214
            AHVYFAQG F+ AVKMYQNCLRKFYY+TD Q+LLYLART+YEAEQWQDCKKTLLRAIHLA
Sbjct: 718  AHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTYYEAEQWQDCKKTLLRAIHLA 777

Query: 1213 PSNYTLRFDAGVALQKFSASTLQKTKKTADEVRSTVAELKNAVRVFSQLSAASNHHIHGF 1034
            PSNYTLRFDAGVA+QKFSASTLQKTK+TADEVRSTVAEL+NAVRVFSQLSAASN H HGF
Sbjct: 778  PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELENAVRVFSQLSAASNLHFHGF 837

Query: 1033 DEKKIETHVGYCKHLLDAAKVHCXXXXXXXXXXXXXXEVARQVXXXXXXXXXXXXXRKYQ 854
            DEKKI+THVGYCKHLL+AA VH               E+ARQV             RK+Q
Sbjct: 838  DEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVALAEDARRKADEQRKFQ 897

Query: 853  LEKRKQEDEIXXXXXXXXXXXXXXXXXKSSTPASKRKDRSHADDEEGGHSE--NXXXXXX 680
            LE+RK EDE                  KS TPA KR++RS  DD+E G+SE         
Sbjct: 898  LERRKLEDEEKRMMQQEQHFKRVKEQWKSITPA-KRRERSEIDDDEAGNSEKRRRKGGKR 956

Query: 679  XXXXXXXKPQYEMDEVEPNTMYEXXXXXXXXDTNLVNN--HEKDKDQMNRQENDGEENTQ 506
                   K  YE +E + + M +          N  NN  + + + Q+N Q +D E N Q
Sbjct: 957  RKKDRKGKSHYETEEADNDMMDDQELY------NEDNNISYRESRSQVNDQGDDFEGNDQ 1010

Query: 505  DLLAAAGLEDSDVEDDMNDPPSTKYRRKRALSDSDEDEPSDRKAESGQNRESLAEPE-SD 329
            D LA AGLEDSD ED+   P S   RR+   SDS+EDEP D + ES   RE+ A  E SD
Sbjct: 1011 DALAEAGLEDSDAEDEAGAPSSNAARRRATWSDSEEDEPIDTQRESRLQRENSAGLEDSD 1070

Query: 328  GEFR 317
            GE R
Sbjct: 1071 GEIR 1074


>ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa]
            gi|222833309|gb|EEE71786.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 1056

 Score = 1419 bits (3674), Expect = 0.0
 Identities = 735/1064 (69%), Positives = 858/1064 (80%), Gaps = 6/1064 (0%)
 Frame = -3

Query: 3541 MGCVYIPVQHSDEEVRVVLNQLPLDANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQ 3362
            M  VYIPVQ+S+EEVRV L+QLP DA+DILDILKAEQA LDLWLIIAREYFKQG ++QF+
Sbjct: 1    MAFVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLDQFR 60

Query: 3361 QILEEGSSPEIDEYYADVKYDRIAILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKA 3182
            QILEEGSS EIDEYYADV+Y+RIAILNALGAY+SYLGK E+K  +K+++FI ATK+YNKA
Sbjct: 61   QILEEGSSHEIDEYYADVRYERIAILNALGAYYSYLGKVETKQREKEEYFIQATKHYNKA 120

Query: 3181 SRIDIHEPSTWVGKGQLLLAKGDLEQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSD 3002
            SRID+HEPSTWVGKGQLLLAKG++EQAS AF+IVL+G++DNV ALLGQACV++SRG Y +
Sbjct: 121  SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFRIVLEGDRDNVSALLGQACVEYSRGHYGE 180

Query: 3001 SLELYKRALKVYPSCPGAVRLGIGLCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLM 2822
            SL L+KRAL+VYP CPGAVRLGIG C YKLG   KA  AFQR   LDP+NVEALV+L ++
Sbjct: 181  SLTLFKRALQVYPDCPGAVRLGIGHCHYKLGHVGKACLAFQR---LDPENVEALVSLAIL 237

Query: 2821 DLQINKGDEIQKGMEKMQAAFEIYPYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEP 2642
            DLQ N+   I+KGMEKMQ AFEIYPYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  
Sbjct: 238  DLQTNEAAAIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297

Query: 2641 GLQKSHSFYNLARSYHTKGDYEKAGFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRG 2462
            G  KSHS+YNLARSYH+KGDYE A  YY ASVKEI++P +FV PYYGLGQVQLKLG+ + 
Sbjct: 298  GPTKSHSYYNLARSYHSKGDYETASRYYWASVKEINKPSEFVFPYYGLGQVQLKLGEIKN 357

Query: 2461 SLSNFEKVLEVYPENGESLRVVGHIYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELL 2282
            +LSNFEKVLEVYP+N E+L+V+GHIYVQLGQTEKA + LRKA +IDPRDAQAFL+LGELL
Sbjct: 358  ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQTEKAQEFLRKAAKIDPRDAQAFLDLGELL 417

Query: 2281 ISSDAGAALDAFKTARSLLKKSGGKAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVW 2102
            IS+D GAALDAFKTARSLLKK G + PIE+LNNI V+HF++ + ELA Q FKEALG+G+W
Sbjct: 418  ISTDTGAALDAFKTARSLLKKGGEEVPIEVLNNIAVIHFEREELELALQNFKEALGDGIW 477

Query: 2101 LDLVDGKFCSSAVDSD----QFCDMQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHD 1934
            L  ++GK  +  VD+     Q+ DMQ+F+RL+E G  VEL W+KVTTLFN ARLLEQLH+
Sbjct: 478  LTFLEGKANTYEVDATSSLLQYKDMQIFRRLEEEGHSVELSWNKVTTLFNLARLLEQLHN 537

Query: 1933 AEKASILYRLILFKYPDYQDAYLRLAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLG 1754
             E AS LYRLILFKYPDY DAYLRLAAIAK+RNN+ LSIEL+ EA+ VN+KCP+ALSMLG
Sbjct: 538  TETASTLYRLILFKYPDYVDAYLRLAAIAKARNNLPLSIELVNEALTVNDKCPNALSMLG 597

Query: 1753 ALELKNDDWLKAKETFRAAREATDGKDSYSALSLGNWNYFAAARSEKKGAKLEATHLEKA 1574
             LELKNDDW+KAKETFRAA EATDGKDSY+ LSLGNWNYFAA R+EK+  KLEATHLEKA
Sbjct: 598  DLELKNDDWVKAKETFRAASEATDGKDSYATLSLGNWNYFAAIRNEKRNPKLEATHLEKA 657

Query: 1573 KELYTKVLVQHPANLYAANGAAVVLAEKGQFDVSKEIFTQVQEAASGSIFVQMPDVWINL 1394
            KELYT+VLVQH ANLYAANGA VVLAEKG FDVSK++FTQVQEAASGSIFVQMPDVWINL
Sbjct: 658  KELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFTQVQEAASGSIFVQMPDVWINL 717

Query: 1393 AHVYFAQGQFTSAVKMYQNCLRKFYYSTDTQVLLYLARTHYEAEQWQDCKKTLLRAIHLA 1214
            AHVYFAQG F  AVKMYQNCL+KF+Y+TD+Q+LLYLARTHYEAEQWQDCK+TLLRAIHL 
Sbjct: 718  AHVYFAQGNFALAVKMYQNCLQKFFYNTDSQILLYLARTHYEAEQWQDCKRTLLRAIHLT 777

Query: 1213 PSNYTLRFDAGVALQKFSASTLQKTKKTADEVRSTVAELKNAVRVFSQLSAASNHHIHGF 1034
            PSNYTLRFDAGVA+QKFSASTLQKTK+T DEVRSTV EL+NAVR+FSQLSAASN + +GF
Sbjct: 778  PSNYTLRFDAGVAMQKFSASTLQKTKRTVDEVRSTVDELENAVRLFSQLSAASNLYFNGF 837

Query: 1033 DEKKIETHVGYCKHLLDAAKVHCXXXXXXXXXXXXXXEVARQVXXXXXXXXXXXXXRKYQ 854
            DEKKI THV YCKHLL+AA VH               ++ARQ+             RK+Q
Sbjct: 838  DEKKINTHVEYCKHLLEAAIVHREAAEREEQQNRQRLDLARQMALAEEARRKAEEQRKFQ 897

Query: 853  LEKRKQEDEIXXXXXXXXXXXXXXXXXKSSTPASKRKDRSHADDEEGGHSE--NXXXXXX 680
            LE+RKQEDE+                 KSST ASKR+DR+  DD EGGH E         
Sbjct: 898  LERRKQEDELKRVRQQEEHFERVKEQWKSSTSASKRRDRADIDDGEGGHGEKRRRKGGKR 957

Query: 679  XXXXXXXKPQYEMDEVEPNTMYEXXXXXXXXDTNLVNNHEKDKDQMNRQENDGEENTQDL 500
                   + +YEM+E +   M +        D N+  N  +   QMN Q+++ EEN QD+
Sbjct: 958  RKKEKSSRSRYEMEEAD---MMDDHDEPEDDDANV--NFREPGYQMNDQDDNAEENAQDV 1012

Query: 499  LAAAGLEDSDVEDDMNDPPSTKYRRKRALSDSDEDEPSDRKAES 368
            LAAAGLEDSD +DD    PS+  RRKRA S+SDEDE S+RK +S
Sbjct: 1013 LAAAGLEDSDADDDA-AAPSSAGRRKRAWSESDEDEISERKPQS 1055