BLASTX nr result
ID: Coptis24_contig00001233
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00001233
(3143 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 597 e-168
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga... 596 e-167
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga... 573 e-160
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 563 e-157
gb|AAP54617.2| retrotransposon protein, putative, unclassified [... 563 e-157
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 597 bits (1540), Expect = e-168
Identities = 353/1026 (34%), Positives = 545/1026 (53%), Gaps = 21/1026 (2%)
Frame = +3
Query: 72 MADLEMADLGYHGPAFTWSNNRLGAAN-IRERIDRVVANVEWLNLFPLVSVDHVTTPSSD 248
+ D + DLG+ G AFTW N+ IRER+DR VAN EW +FP V + SD
Sbjct: 411 LTDCGLDDLGFEGDAFTWRNHSHSQEGYIRERLDRAVANPEWRAMFPAARVINGDPRHSD 470
Query: 249 HVALAVYVSGKVD-----SGPKPFRFHEMWTKDPSCMDVIKHCWQTHVHGSPSFILNSKF 413
H + + + GK +G FRF W ++ +V+K W G +++
Sbjct: 471 HRPVIIELEGKNKGVRGRNGHNDFRFEAAWLEEEKFKEVVKEAWDVSA-GLQGLPVHASL 529
Query: 414 VELQSSLRVWNKTYFGNIFSQIKEAESALSSLLAGPVSDLVLVEIKNIKEHILELYKKEE 593
+ + L W+ G++ ++K+ + L + P+S +V + ++ + +L ++ +
Sbjct: 530 AGVAAGLSSWSSNVLGDLEKRVKKVKKELETCRRQPISRDQVVREEVLRYRLEKLEQQVD 589
Query: 594 SYWKQHSNTSMVLEADNNTKFFHSNASFRRRRNSIDKIQTEAGLWVTSRSEVAQEFISSF 773
YWKQ ++T+ + + D NT FFH++ S RRRRN I+K++ E G WV + I F
Sbjct: 590 IYWKQRAHTNWLNKGDRNTSFFHASCSERRRRNRINKLRREDGSWVEREEDKRAMIIEFF 649
Query: 774 EDTFRPSPNLALLPSLDIILDLFDPCISISENDSLTRCPSRTEIRKVLKSMGGLKAPGPD 953
+ F + + +LD+ D +S + N+SL +R E+++ L ++G LKAPGPD
Sbjct: 650 KQLFTSNGG----QNSQKLLDVVDRKVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPD 705
Query: 954 GFPAMFYQKYWRLVGEDLVRMVQCFFNTGRFGIYLNQTYISLIPKIDCPSHTSHYRPISL 1133
G PA FY+ W +VGE + V G N I LIPK+ P RPISL
Sbjct: 706 GMPAGFYKACWDVVGEKVTDEVLEVLRGGAIPEGWNDITIVLIPKVKKPELIKDLRPISL 765
Query: 1134 CNVSYKVISKILANRLRSLLPKFISPNQGAFAPKRSIGDNIGVVHEIVHKIKRAKKNKLG 1313
CNV YK++SK+LANRL+ +LP ISP Q AF P R I DNI + E+ H ++ + ++G
Sbjct: 766 CNVCYKLVSKVLANRLKKILPDVISPAQSAFVPGRLISDNILIADEMTHYMRNKRSGQVG 825
Query: 1314 LFALKVDMSKAYDRVDWGALLAIMVKLGFSSKWITLVEFCISTVKYNVLLNGSPLRTITP 1493
A K+DMSKAYDRV+W L +++KLGF + W+ L+ C+STV Y + +NG + +P
Sbjct: 826 YAAFKLDMSKAYDRVEWSFLHDMILKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSP 885
Query: 1494 LRGLRQGDPLSPYLFIILTEALSRXXXXXXXXXDISGIKISRRAPSVSHMLYADDLIVFG 1673
RGLRQGDPLSPYLF++ E S + GI+I + APSVSH+L+ADD ++
Sbjct: 886 GRGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILC 945
Query: 1674 KTSPFEVHKIKKIMDLYCNGTGQMVNLDKSAILFSGGTSRDTQEAIMHTLQVRPMSVRDK 1853
+ + E +++ I+ +Y +GQ++N DKSA++FS TS + A+M L ++ + ++
Sbjct: 946 RANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKRAVMAALNMQRETTNER 1005
Query: 1854 YLGSPIIFSTSKIQDFSFLLDKVRGAVSNWQGKLLSQAGKTILVQAVAQAKPIYSMSAFY 2033
YLG P+ S+ + FS+L +++ + W+ KLLS+AGK IL++AVAQA P ++M F
Sbjct: 1006 YLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFE 1065
Query: 2034 LPLDITSKMDRACRNFWWNNAD-SNAIHLCTWDKLCMPKAEGGLGFRDSHLFNLALLCKL 2210
L D+ ++ + +WW+N + N +H +W+KL +PK GGLGFRD ++FNLA+L K
Sbjct: 1066 LTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQ 1125
Query: 2211 LWKVVSE-KSLWSDLMLAKYEKDLTLHNHANP--SSGVSPICRGLQKVKRFVELGAIWSI 2381
W+++ + SL S ++ AKY L + P +S VS R +QK R ++ G IW +
Sbjct: 1126 GWRLIQDPDSLCSRVLRAKY---FPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRV 1182
Query: 2382 GDGASVKFWTDQWIK--VMDKPCSLIDMXXXXXXXXXXXXXXXEFINP-DGSWDCVGLRA 2552
GDG+ + W D WI KP + E I+P G+WD L
Sbjct: 1183 GDGSKINIWADPWIPRGWSRKPMT--------PRGANLVTKVEELIDPYTGTWDEDLLSQ 1234
Query: 2553 LVPSLVLNXXXXXXXXXXXXDKLMWNPAVNGRFSVKSAFNFIKALESNIGQ-----CSSA 2717
+ D L W+ G F+VKSA+ + +E + S+
Sbjct: 1235 TFWEEDVAAIKSIPVHVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNW 1294
Query: 2718 QQSHD--FMIIWKLKIPARVKLFLWKIANNLLSTGATLEQHHVPVDNCCVFCNNHVEDFQ 2891
+ D + +WKL +P ++K FLW++ +N L+ A L + VD CV C + ED
Sbjct: 1295 ESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAG 1354
Query: 2892 HLFFTCPWTSRLWFSSWLGLRVDCDAFETQ-NWFNYFRSRDSSYENLSLYAFSLMYNIWW 3068
HLFF C ++W + L L E Q + N +S EN A ++ W
Sbjct: 1355 HLFFKCKPVKKVWQA--LNLEELRSMLEQQTSGKNVLQSIYCRPENERTSAIVCLWQWWK 1412
Query: 3069 HRNECR 3086
RNE R
Sbjct: 1413 ERNEVR 1418
>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1389
Score = 596 bits (1536), Expect = e-167
Identities = 361/1040 (34%), Positives = 547/1040 (52%), Gaps = 25/1040 (2%)
Frame = +3
Query: 69 MMADLEMADLGYHGPAFTWSNNRLGAANIRERIDRVVANVEWLNLFPLVSVDHVTTPSSD 248
+ + ++ ++ + G FTW + G NI ER+DR VA+ WL LFP + H SSD
Sbjct: 169 LFSQVDCTEISFTGQIFTWRKKKDGPNNIHERLDRGVASTSWLMLFPHAFLKHHIFTSSD 228
Query: 249 HVALAVYVSGKVDSGPKPFRFHEMWTKDPSCMDVIKHCWQTHVHGSP--SFILNSKFVEL 422
H +++ S PFRF +MW ++K W T +GS +F+ K V++
Sbjct: 229 HCQISLEYLANNKSKAPPFRFEKMWCTRKDYDSLVKRTWCTKFYGSHMFNFVQKCKLVKI 288
Query: 423 QSSLRVWNKTYFGNIFSQIKEAESALSSLLAGPVSDLVLVEIKNIKEHIL----ELYKKE 590
S + WNKT FGNIF Q+++ + L + + D +K +E L +L +
Sbjct: 289 NS--KEWNKTQFGNIFRQLRQVDERLEEIQRNLLIDHNNTSLKTQQELFLAKRNKLLEYN 346
Query: 591 ESYWKQHSNTSMVLEADNNTKFFHSNASFRRRRNSIDKIQTEAGLWVTSRSEVAQEFISS 770
+YWKQ + ++ D N+KF+H++AS R+ RN I + + +T + +E +
Sbjct: 347 TTYWKQKCKSDFMVLGDTNSKFYHTHASIRKYRNQIKEFIPDNAQPITQPDLIEKEITLA 406
Query: 771 FEDTFRPSPNLALLPSLDIILDLFDPCISISENDSLTRCPSRTEIRKVLKSMGGLKAPGP 950
F+ F +P ++D +L P +S ++N LT S EI+ + + K+PGP
Sbjct: 407 FKKRFISNPACKFNQNVDF--NLLSPIVSEADNAYLTSAVSPEEIKNAVFDLAPDKSPGP 464
Query: 951 DGFPAMFYQKYWRLVGEDLVRMVQCFFNTGRFGIYLNQTYISLIPKIDCPSHTSHYRPIS 1130
DGFP F+QKYW L+G+ + R VQ FF++G +N T+++LIPK+D P + +H+RPIS
Sbjct: 465 DGFPPYFFQKYWTLIGKSVCRAVQAFFHSGYMLKEVNHTFLALIPKVDKPVNANHFRPIS 524
Query: 1131 LCNVSYKVISKILANRLRSLLPKFISPNQGAFAPKRSIGDNIGVVHEIVHKIKRAKKNKL 1310
LC+ YKVISKI+ NRL+ L K I P QGAF P+R I DNI + HE+ H K K +
Sbjct: 525 LCSTIYKVISKIITNRLKITLGKIIHPLQGAFIPERLIQDNILIAHEVFHSFKN-KTGRG 583
Query: 1311 GLFALKVDMSKAYDRVDWGALLAIMVKLGFSSKWITLVEFCISTVKYNVLLNGSPLRTIT 1490
G A+K+DM KAYDR++W + M K+GFS WI + CIS+ ++VL+NG P
Sbjct: 584 GWIAIKLDMEKAYDRLEWKYIYTTMDKMGFSPIWIEWIRSCISSASFSVLVNGIPGERFF 643
Query: 1491 PLRGLRQGDPLSPYLFIILTEALSR-XXXXXXXXXDISGIKISRRAPSVSHMLYADDLIV 1667
P RG+RQGDPLSPYLFI+ E L+R + G+ I R + + +ADD ++
Sbjct: 644 PSRGIRQGDPLSPYLFILCAELLAREFSKACHEPGKLIGVPIGRTRTRIPFLTFADDTMI 703
Query: 1668 FGKTSPFEVHKIKKIMDLYCNGTGQMVNLDKSAILFSGGTSRDTQEAIMHTLQVRPMSVR 1847
F K + HKI++I+D YC +GQ+VN KSA S + L ++ S
Sbjct: 704 FAKATEASCHKIRQILDKYCLMSGQLVNYHKSAFQCSPNVRDIDKVNFASILGMQESSEL 763
Query: 1848 DKYLGSPIIFSTSKIQDFSFLLDKVRGAVSNWQGKLLSQAGKTILVQAVAQAKPIYSMSA 2027
YLG PII S + F+ ++ K + W+ LSQAG+T+L+Q+ +K + M +
Sbjct: 764 GDYLGCPIINSRVTKETFAGVISKTVQQLPKWKANSLSQAGRTVLIQSNLASKASFQMQS 823
Query: 2028 FYLPLDITSKMDRACRNFWWN-NADSNAIHLCTWDKLCMPKAEGGLGFRDSHLFNLALLC 2204
F LP + + +D RNF+WN + + + + W+K+C PK+ GG+GFR + + N+AL
Sbjct: 824 FTLPKKVLTTLDTTYRNFFWNKDPAAKSANFIGWNKICQPKSVGGVGFRKAEVTNIALQM 883
Query: 2205 KLLWKV-VSEKSLWSDLMLAKYEKDLTLHNHANPSSGVSPICRGLQKVKRFVELGAIWSI 2381
KLLWK+ VS+ ++W L+ KY K+ L PS+ S + L + + F G W I
Sbjct: 884 KLLWKIMVSKDNIWVKLVTQKYLKEQNLLVCKIPSN-ASWQWKNLLRHRNFFSKGLRWLI 942
Query: 2382 GDGASVKFWTDQWIKVMDKPCSLIDMXXXXXXXXXXXXXXXEFINPDGSWDCVGLRALV- 2558
GDG + FWTD WI P + E N G WD L LV
Sbjct: 943 GDGQDISFWTDNWI--FQYPLN----SKYVPTVGSENIKVAECFNGLGGWDIPKLLTLVP 996
Query: 2559 PSLVLNXXXXXXXXXXXXDKLMWNPAVNGRFSVKSAFNFIKALESNIGQCSSAQQSHDFM 2738
P++V D+L+W G++SVKS + I+ E N G +F
Sbjct: 997 PNIVKAISSVFIPSSSQQDRLLWGLTPTGQYSVKSGASLIR--EVNGGTIEKV----EFN 1050
Query: 2739 IIWKLKIPARVKLFLWKIANNLLSTGATLEQHHVPVDNCCVFCNNHVEDFQHLFFTCPWT 2918
IW + P ++K FLWK N+ L+T + LE+ H+ V C FC+ E HL F CP+T
Sbjct: 1051 WIWGIHAPPKIKNFLWKACNDGLATTSRLERSHIFVPQNCCFCDCPSETICHLCFQCPFT 1110
Query: 2919 SRLWFSSWLGLRVDCDAFETQNWF-----NYFRS-RDSSYENLSLYAFSLMYNIWWH--- 3071
++ S L + A+ +WF + FRS ++ + NL+L + + +WWH
Sbjct: 1111 LDIY--SHLEDKFQWPAY--PSWFSTLQLSSFRSVLEACHINLTLEYLTKLSIVWWHVWY 1166
Query: 3072 -RNECRF-----SFMKPNFI 3113
RN+ F SF + +FI
Sbjct: 1167 FRNKLIFNNESTSFSQASFI 1186
>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1362
Score = 573 bits (1477), Expect = e-160
Identities = 348/1026 (33%), Positives = 522/1026 (50%), Gaps = 22/1026 (2%)
Frame = +3
Query: 78 DLEMADLGYHGPAFTWSNNRLGAANIRERIDRVVANVEWLNLFPLVSVDHVTTPSSDHVA 257
D + DLGY G FTW + IRER+DR++AN EW + FP V H+ SDH
Sbjct: 167 DCAVKDLGYVGNRFTWQRGNSPSTLIRERLDRMLANDEWCDNFPSWEVVHLPRYRSDHAP 226
Query: 258 LAVY--VSGKVDSGPKPFRFHEMWTKDPSCMDVIKHCWQTHVHGSPSFILNSKFVELQSS 431
L + V+ G K F+F MW C +++ W +GS + ++ E+ S
Sbjct: 227 LLLKTGVNDSFRRGNKLFKFEAMWLSKEECGKIVEEAW----NGSAGEDITNRLDEVSRS 282
Query: 432 LRVWNKTYFGNIFSQIKEAESALSSLLAGPVSDLVLVEIKNIKEHILELYKKEESYWKQH 611
L W FGN+ + KEA + L+ L L + + + + E+++ EESYW
Sbjct: 283 LSTWATKTFGNLKKRKKEALTLLNGLQQRDPDASTLEQCRIVSGDLDEIHRLEESYWHAR 342
Query: 612 SNTSMVLEADNNTKFFHSNASFRRRRNSIDKIQTEAGLWVTSRSEVAQEFISSFEDTFRP 791
+ + + + D NTK+FH AS R+RRN+I+++ E G+W R E+ FE F
Sbjct: 343 ARANEIRDGDKNTKYFHHKASQRKRRNTINELLDENGVWKKGREEICGVVQHYFEGLFAT 402
Query: 792 SPNLALLPSLDIILDLFDPCISISENDSLTRCPSRTEIRKVLKSMGGLKAPGPDGFPAMF 971
+ ++++ L+ C+S N +L PS E+++ L +M KAPG DG A+F
Sbjct: 403 DSPV----NMELALEGLSHCVSTDMNTALLMLPSGDEVKEALFAMHPNKAPGIDGLHALF 458
Query: 972 YQKYWRLVGEDLVRMVQCFFN-TGRFGIYLNQTYISLIPKIDCPSHTSHYRPISLCNVSY 1148
+QK+W ++G D++ VQ ++ G G+ +N+T I LIPK D P +RPISLC V Y
Sbjct: 459 FQKFWHILGSDVISFVQSWWRGMGDLGV-VNKTCIVLIPKCDHPQSMKDFRPISLCTVLY 517
Query: 1149 KVISKILANRLRSLLPKFISPNQGAFAPKRSIGDNIGVVHEIVHKIKRAKKNKLGLFALK 1328
K++SK LANRL+ +LP ISPNQ AF P+R I DN V EI H +KR NK G+ ALK
Sbjct: 518 KILSKTLANRLKVILPAIISPNQSAFVPRRLITDNALVAFEIFHAMKRKDANKNGVCALK 577
Query: 1329 VDMSKAYDRVDWGALLAIMVKLGFSSKWITLVEFCISTVKYNVLLNGSPLRTITPLRGLR 1508
+DMSKAYDRV+W L +M K+GF WI V CIS+V + +NG +++P RGLR
Sbjct: 578 LDMSKAYDRVEWCFLERVMKKMGFCDGWIDRVMACISSVSFTFNVNGVVEGSLSPSRGLR 637
Query: 1509 QGDPLSPYLFIILTEALSRXXXXXXXXXDISGIKISRRAPSVSHMLYADDLIVFGKTSPF 1688
QGDP+SPYLF++ +A S I G +I R AP VSH+ +ADD I+F K S
Sbjct: 638 QGDPISPYLFLLCADAFSTLLSKAASEKKIHGAQICRGAPVVSHLFFADDSILFTKASVQ 697
Query: 1689 EVHKIKKIMDLYCNGTGQMVNLDKSAILFSGGTSRDTQEAIMHTLQVRPMSVRDKYLGSP 1868
E + I+ Y +GQ VNL K+ ++FS R+ + AI++ L V+ + ++KYLG P
Sbjct: 698 ECSMVADIISKYERASGQQVNLSKTEVVFSRSVDRERRSAIVNVLGVKEVDRQEKYLGLP 757
Query: 1869 IIFSTSKIQDFSFLLDKVRGAVSNWQGKLLSQAGKTILVQAVAQAKPIYSMSAFYLPLDI 2048
I SK F+ + +++ + W+ KLLS+ GK +L+++VAQA P Y MS F LP +
Sbjct: 758 TIIGRSKKVTFACIKERIWKKLQGWKEKLLSRPGKEVLIKSVAQAIPTYMMSVFSLPSGL 817
Query: 2049 TSKMDRACRNFWWNNADSN-AIHLCTWDKLCMPKAEGGLGFRDSHLFNLALLCKLLWKV- 2222
++ FWW ++D+N +H +WD LC PK+ GGLGFRD H FN +LL K W++
Sbjct: 818 IDEIHSLLARFWWGSSDTNRKMHWHSWDTLCYPKSMGGLGFRDLHCFNQSLLAKQAWRLC 877
Query: 2223 VSEKSLWSDLMLAKYEKDLTLHNHANPSSGVSPICRGLQKVKRFVELGAIWSIGDGASVK 2402
+++L L+ A+Y K L A S R + K + G W +G G ++
Sbjct: 878 TGDQTLLYRLLQARYFKSSEL-LEARRGYNPSFTWRSIWGSKSLLLEGLKWCVGSGERIR 936
Query: 2403 FWTDQWI---------------KVMDKPCSLIDMXXXXXXXXXXXXXXXEFINPDGSWDC 2537
W D WI + K C LID+ E W+
Sbjct: 937 VWEDAWILGEGAHMVPTPQADSNLDLKVCDLIDVARGAWNIESVQQTFVE-----EEWE- 990
Query: 2538 VGLRALVPSLVLNXXXXXXXXXXXXDKLMWNPAVNGRFSVKSAFNFIKALESNIGQCSSA 2717
LV S+ L+ D W P+ NG FSV+S + + Q
Sbjct: 991 -----LVLSIPLS-------RFLPDDHRYWWPSRNGIFSVRSCYWLGRLGPVRTWQLQHG 1038
Query: 2718 QQSHD-FMIIWKLKIPARVKLFLWKIANNLLSTGATLEQHHVPVDNCCVFCNNHVEDFQH 2894
++ + + +W+L+ P ++ FLW+ L+ L H+ VD C C + E H
Sbjct: 1039 ERETELWRRVWQLQGPPKLSHFLWRACKGSLAVKGRLFSRHISVDATCSVCGDPDESINH 1098
Query: 2895 LFFTCPWTSRLW-FSSWLGLRVDCDAFETQNWFNYFRSRDSSYENLSLYAFSLMYNIWWH 3071
F C + +W S + L ++ + + E ++ +F M+ W+
Sbjct: 1099 ALFDCTFARAIWQVSGFASLMMNAPLSSFSERLEWLAKHATKEEFRTMCSF--MWAGWFC 1156
Query: 3072 RNECRF 3089
RN+ F
Sbjct: 1157 RNKLIF 1162
>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
Japonica Group]
Length = 1382
Score = 563 bits (1450), Expect = e-157
Identities = 346/1024 (33%), Positives = 532/1024 (51%), Gaps = 21/1024 (2%)
Frame = +3
Query: 78 DLEMADLGYHGPAFTWSNNRLGAANIRERIDRVVANVEWLNLFPLVSVDHVTTPSSDHVA 257
D + DLG+ GP FTWSN + +N + R+DR VAN E+ F V++V T SSDH A
Sbjct: 172 DCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYA 231
Query: 258 LAVYVSGKVDSGPK-----PFRFHEMWTKDPSCMDVIKHCWQTHVHGSPSFI-LNSKFVE 419
+++ +S + + FRF W + +V+++ W+ G + S +
Sbjct: 232 ISIDLSRRNHGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQ 291
Query: 420 LQSSLRVWNKTYFGNIFSQIKEAESALSSLLAGPVSDLVLVEIKNIKEHILELYKKEESY 599
+ SL+ W+K FG++ +I + E L SL PV+D+V+ E K I++ + EL++KEE
Sbjct: 292 VAVSLKDWSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQLCELFEKEEIM 351
Query: 600 WKQHSNTSMVLEADNNTKFFHSNASFRRRRNSIDKIQTEAGLWVTSRSEVAQEFISSFED 779
+Q S + E D NT FFH+ AS RRR N I ++ + G S+ + + +E+
Sbjct: 352 ARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYEN 411
Query: 780 TFRPSPNLALLPSLDIILDLFDPCISISENDSLTRCPSRTEIRKVLKSMGGLKAPGPDGF 959
F P S++ +LD + N L + + EI+ L MG KAPGPDGF
Sbjct: 412 LFSSEP----CDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGF 467
Query: 960 PAMFYQKYWRLVGEDLVRMVQCFFNTGRFGIYLNQTYISLIPKIDCPSHTSHYRPISLCN 1139
PA+FYQ +W ++ E + V+ F L + + LIPK++ SH S +RPISLCN
Sbjct: 468 PALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCN 527
Query: 1140 VSYKVISKILANRLRSLLPKFISPNQGAFAPKRSIGDNIGVVHEIVHKIKRAKKNKLGLF 1319
V YK+ SK+LANRL+ LP +S Q AF P R I D+ V +E +H I++ + NK F
Sbjct: 528 VLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRK-QHNKNPFF 586
Query: 1320 ALKVDMSKAYDRVDWGALLAIMVKLGFSSKWITLVEFCISTVKYNVLLNGSPLRTITPLR 1499
ALK+DM KAYDRV+W L + KLGFS WI V C+S+V+Y V +NG + + P R
Sbjct: 587 ALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSR 646
Query: 1500 GLRQGDPLSPYLFIILTEALSRXXXXXXXXXDISGIKISRRAPSVSHMLYADDLIVFGKT 1679
G+RQGDP+SPYLF++ TE LS ++ GIK R P +SH+L+ADD I F K
Sbjct: 647 GIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKA 706
Query: 1680 SPFEVHKIKKIMDLYCNGTGQMVNLDKSAILFSGGTSRDTQEAIMHTLQVRPMSVRDKYL 1859
V +K + YC+ +GQ +NL KS+I F + ++ LQV ++D YL
Sbjct: 707 DSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYL 766
Query: 1860 GSPIIFSTSKIQDFSFLLDKVRGAVSNWQGKLLSQAGKTILVQAVAQAKPIYSMSAFYLP 2039
G P + F FL +++ V+ W + LS+AG +++AVAQA P Y MS F +P
Sbjct: 767 GMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIP 826
Query: 2040 LDITSKMDRACRNFWWNNAD-SNAIHLCTWDKLCMPKAEGGLGFRDSHLFNLALLCKLLW 2216
+ I KM + WW D +H +W L PK GG+GFR+ FN A+L + W
Sbjct: 827 VSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCW 886
Query: 2217 KVVSE-KSLWSDLMLAKYEKDLTLHNHANPSSGVSPICRGLQKVKRFVELGAIWSIGDGA 2393
+++++ SL S ++ +Y + + A P S S R L + + G W +GDG
Sbjct: 887 RLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKS-PSFTWRSLLFGRELLAKGVRWGVGDGK 945
Query: 2394 SVKFWTDQWIKVMDKPCSLIDMXXXXXXXXXXXXXXXEFINPDG-SWDCVGLRALVP-SL 2567
++K ++D WI +P + + +N D WD +R+L P +
Sbjct: 946 TIKIFSDNWIPGF-RPQLVTTLSPFPTDATVSC-----LMNEDARCWDGDLIRSLFPVDI 999
Query: 2568 VLNXXXXXXXXXXXXDKLMWNPAVNGRFSVKSAFNFIK-----ALESNIGQCSSA---QQ 2723
D W G +SV+SA+N + A +SN G+ ++ +
Sbjct: 1000 AKEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLES 1059
Query: 2724 SHDFMIIWKLKIPARVKLFLWKIANNLLSTGATLEQHHVPVDNCCVFCNNHVEDFQHLFF 2903
D+ +WK+ P ++K+ LW+ A+ L+TG L + H+P + CVFCN + +H+F
Sbjct: 1060 QKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNRD-DTVEHVFL 1118
Query: 2904 TCPWTSRLW--FSSWLGLRVDCDAFET-QNWFNYFRSRDSSYENLSLYAFSLMYNIWWHR 3074
CP+ +++W +++ + F T + W F R SS+ N L ++IW R
Sbjct: 1119 FCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAV--TFWHIWEAR 1176
Query: 3075 NECR 3086
N +
Sbjct: 1177 NNTK 1180
>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
protein OsJ_32156 [Oryza sativa Japonica Group]
Length = 1339
Score = 563 bits (1450), Expect = e-157
Identities = 346/1024 (33%), Positives = 532/1024 (51%), Gaps = 21/1024 (2%)
Frame = +3
Query: 78 DLEMADLGYHGPAFTWSNNRLGAANIRERIDRVVANVEWLNLFPLVSVDHVTTPSSDHVA 257
D + DLG+ GP FTWSN + +N + R+DR VAN E+ F V++V T SSDH A
Sbjct: 129 DCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYA 188
Query: 258 LAVYVSGKVDSGPK-----PFRFHEMWTKDPSCMDVIKHCWQTHVHGSPSFI-LNSKFVE 419
+++ +S + + FRF W + +V+++ W+ G + S +
Sbjct: 189 ISIDLSRRNHGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQ 248
Query: 420 LQSSLRVWNKTYFGNIFSQIKEAESALSSLLAGPVSDLVLVEIKNIKEHILELYKKEESY 599
+ SL+ W+K FG++ +I + E L SL PV+D+V+ E K I++ + EL++KEE
Sbjct: 249 VAVSLKDWSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQLCELFEKEEIM 308
Query: 600 WKQHSNTSMVLEADNNTKFFHSNASFRRRRNSIDKIQTEAGLWVTSRSEVAQEFISSFED 779
+Q S + E D NT FFH+ AS RRR N I ++ + G S+ + + +E+
Sbjct: 309 ARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYEN 368
Query: 780 TFRPSPNLALLPSLDIILDLFDPCISISENDSLTRCPSRTEIRKVLKSMGGLKAPGPDGF 959
F P S++ +LD + N L + + EI+ L MG KAPGPDGF
Sbjct: 369 LFSSEP----CDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGF 424
Query: 960 PAMFYQKYWRLVGEDLVRMVQCFFNTGRFGIYLNQTYISLIPKIDCPSHTSHYRPISLCN 1139
PA+FYQ +W ++ E + V+ F L + + LIPK++ SH S +RPISLCN
Sbjct: 425 PALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCN 484
Query: 1140 VSYKVISKILANRLRSLLPKFISPNQGAFAPKRSIGDNIGVVHEIVHKIKRAKKNKLGLF 1319
V YK+ SK+LANRL+ LP +S Q AF P R I D+ V +E +H I++ + NK F
Sbjct: 485 VLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRK-QHNKNPFF 543
Query: 1320 ALKVDMSKAYDRVDWGALLAIMVKLGFSSKWITLVEFCISTVKYNVLLNGSPLRTITPLR 1499
ALK+DM KAYDRV+W L + KLGFS WI V C+S+V+Y V +NG + + P R
Sbjct: 544 ALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSR 603
Query: 1500 GLRQGDPLSPYLFIILTEALSRXXXXXXXXXDISGIKISRRAPSVSHMLYADDLIVFGKT 1679
G+RQGDP+SPYLF++ TE LS ++ GIK R P +SH+L+ADD I F K
Sbjct: 604 GIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKA 663
Query: 1680 SPFEVHKIKKIMDLYCNGTGQMVNLDKSAILFSGGTSRDTQEAIMHTLQVRPMSVRDKYL 1859
V +K + YC+ +GQ +NL KS+I F + ++ LQV ++D YL
Sbjct: 664 DSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYL 723
Query: 1860 GSPIIFSTSKIQDFSFLLDKVRGAVSNWQGKLLSQAGKTILVQAVAQAKPIYSMSAFYLP 2039
G P + F FL +++ V+ W + LS+AG +++AVAQA P Y MS F +P
Sbjct: 724 GMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIP 783
Query: 2040 LDITSKMDRACRNFWWNNAD-SNAIHLCTWDKLCMPKAEGGLGFRDSHLFNLALLCKLLW 2216
+ I KM + WW D +H +W L PK GG+GFR+ FN A+L + W
Sbjct: 784 VSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCW 843
Query: 2217 KVVSE-KSLWSDLMLAKYEKDLTLHNHANPSSGVSPICRGLQKVKRFVELGAIWSIGDGA 2393
+++++ SL S ++ +Y + + A P S S R L + + G W +GDG
Sbjct: 844 RLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKS-PSFTWRSLLFGRELLAKGVRWGVGDGK 902
Query: 2394 SVKFWTDQWIKVMDKPCSLIDMXXXXXXXXXXXXXXXEFINPDG-SWDCVGLRALVP-SL 2567
++K ++D WI +P + + +N D WD +R+L P +
Sbjct: 903 TIKIFSDNWIPGF-RPQLVTTLSPFPTDATVSC-----LMNEDARCWDGDLIRSLFPVDI 956
Query: 2568 VLNXXXXXXXXXXXXDKLMWNPAVNGRFSVKSAFNFIK-----ALESNIGQCSSA---QQ 2723
D W G +SV+SA+N + A +SN G+ ++ +
Sbjct: 957 AKEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLES 1016
Query: 2724 SHDFMIIWKLKIPARVKLFLWKIANNLLSTGATLEQHHVPVDNCCVFCNNHVEDFQHLFF 2903
D+ +WK+ P ++K+ LW+ A+ L+TG L + H+P + CVFCN + +H+F
Sbjct: 1017 QKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNRD-DTVEHVFL 1075
Query: 2904 TCPWTSRLW--FSSWLGLRVDCDAFET-QNWFNYFRSRDSSYENLSLYAFSLMYNIWWHR 3074
CP+ +++W +++ + F T + W F R SS+ N L ++IW R
Sbjct: 1076 FCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAV--TFWHIWEAR 1133
Query: 3075 NECR 3086
N +
Sbjct: 1134 NNTK 1137