BLASTX nr result
ID: Coptis24_contig00001160
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00001160
(1368 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI23698.3| unnamed protein product [Vitis vinifera] 231 4e-58
ref|XP_004147161.1| PREDICTED: heterogeneous nuclear ribonucleop... 230 6e-58
ref|XP_002285419.1| PREDICTED: uncharacterized protein LOC100257... 229 2e-57
ref|XP_002528377.1| Heterogeneous nuclear ribonucleoprotein 27C,... 229 2e-57
emb|CAN68016.1| hypothetical protein VITISV_025150 [Vitis vinifera] 229 2e-57
>emb|CBI23698.3| unnamed protein product [Vitis vinifera]
Length = 388
Score = 231 bits (588), Expect = 4e-58
Identities = 119/173 (68%), Positives = 137/173 (79%), Gaps = 1/173 (0%)
Frame = +3
Query: 3 DRVLQDKHTIDGRTVEAKRALSREEQQTSYRSGARGGDRSFGSGGNLKTKKIFVGGLPPT 182
DRVLQ+KH IDGRTVEAKRALSREEQQTS R+G R+ G GGN+KTKKIFVGGLPPT
Sbjct: 61 DRVLQEKHIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKIFVGGLPPT 120
Query: 183 LTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHKSFHDLNGKNV 362
L+EEGFRQYFEA+G VTDVVVM+DQ+TQRPRGFGF++FDTE+AVDRVL+K+FHDLNGK V
Sbjct: 121 LSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQV 180
Query: 363 EVKRALPKDANXXXXXXXXXXXXXXXXXXXNAGN-GSYNSQMDGSRYMQPQAT 518
EVKRALPKDAN + GN +Y+ +MD +RYMQPQ T
Sbjct: 181 EVKRALPKDAN-------PGGGSRYQGYGASGGNPTTYDGRMDSNRYMQPQNT 226
Score = 73.6 bits (179), Expect = 1e-10
Identities = 35/79 (44%), Positives = 53/79 (67%)
Frame = +3
Query: 153 KIFVGGLPPTLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHK 332
K+F+GG+ +E+ ++YF +YG V+ VVM D+ T RPRGFGF+ F +DRVL +
Sbjct: 7 KLFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILDRVLQE 66
Query: 333 SFHDLNGKNVEVKRALPKD 389
H ++G+ VE KRAL ++
Sbjct: 67 K-HIIDGRTVEAKRALSRE 84
>ref|XP_004147161.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Cucumis
sativus]
Length = 462
Score = 230 bits (587), Expect = 6e-58
Identities = 120/178 (67%), Positives = 136/178 (76%), Gaps = 6/178 (3%)
Frame = +3
Query: 3 DRVLQDKHTIDGRTVEAKRALSREEQQTSYRSGARGGDRSFGSGG-NLKTKKIFVGGLPP 179
DRVLQDKHTIDG+TVEAKRALSREEQQT R+ G S GSGG N++TKKIFVGGLPP
Sbjct: 61 DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNGRNSGGSGGGNMRTKKIFVGGLPP 120
Query: 180 TLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHKSFHDLNGKN 359
TLTEEGF++YFEAYG VTDVVVM+DQNT+RPRGFGFI+FDTEEAVDRVLHK+FHDLNGK
Sbjct: 121 TLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQ 180
Query: 360 VEVKRALPKDANXXXXXXXXXXXXXXXXXXXNAGNG-----SYNSQMDGSRYMQPQAT 518
VEVKRALPKDAN +G SY+++MD +RYMQ Q +
Sbjct: 181 VEVKRALPKDANPGAGGRTMSGGAGSGGYQGYGSSGGVNSNSYDNRMDSNRYMQSQGS 238
Score = 73.9 bits (180), Expect = 9e-11
Identities = 36/79 (45%), Positives = 49/79 (62%)
Frame = +3
Query: 153 KIFVGGLPPTLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHK 332
K+F+GG+ +E+ + YF YG V VVM D+ T RPRGFGF+ F +DRVL
Sbjct: 7 KLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLQD 66
Query: 333 SFHDLNGKNVEVKRALPKD 389
H ++GK VE KRAL ++
Sbjct: 67 K-HTIDGKTVEAKRALSRE 84
Score = 63.9 bits (154), Expect = 9e-08
Identities = 51/157 (32%), Positives = 67/157 (42%), Gaps = 43/157 (27%)
Frame = +1
Query: 649 YGNDPPGS-KSSWSGQAPSGYGSAPYG-------------GTGFAAPAQSPSG------T 768
YG+ P G ++SWSGQAPSGYG+ YG G G P +P+G
Sbjct: 297 YGSGPQGGPRNSWSGQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAA 356
Query: 769 AAYGNKDF---------XXXXXXXXXXENQNSY--NAGRGGHANNS------------GN 879
A YGN+ + +Q+ Y GR G A+NS GN
Sbjct: 357 AGYGNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGTTGGRSGSASNSNVGGGPSGGELQGN 416
Query: 880 SVYTSTAWSSDPSQNGNYGTAQASGAPAGQVGYSGGY 990
+ Y + D + N YG A A + GQVGY+GGY
Sbjct: 417 NAYMGNGY-GDANGNTGYGNA-AWRSDGGQVGYTGGY 451
>ref|XP_002285419.1| PREDICTED: uncharacterized protein LOC100257917 [Vitis vinifera]
Length = 464
Score = 229 bits (583), Expect = 2e-57
Identities = 119/178 (66%), Positives = 137/178 (76%), Gaps = 6/178 (3%)
Frame = +3
Query: 3 DRVLQDKHTIDGRTVEAKRALSREEQQTSYRSGARGGDRSFGSGGNLKTKKIFVGGLPPT 182
DRVLQ+KH IDGRTVEAKRALSREEQQTS R+G R+ G GGN+KTKKIFVGGLPPT
Sbjct: 61 DRVLQEKHIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKIFVGGLPPT 120
Query: 183 LTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHKSFHDLNGKNV 362
L+EEGFRQYFEA+G VTDVVVM+DQ+TQRPRGFGF++FDTE+AVDRVL+K+FHDLNGK V
Sbjct: 121 LSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQV 180
Query: 363 EVKRALPKDAN-----XXXXXXXXXXXXXXXXXXXNAGN-GSYNSQMDGSRYMQPQAT 518
EVKRALPKDAN + GN +Y+ +MD +RYMQPQ T
Sbjct: 181 EVKRALPKDANPGGGSRSMGGGAGAVAGGYQGYGASGGNPTTYDGRMDSNRYMQPQNT 238
Score = 92.8 bits (229), Expect = 2e-16
Identities = 62/161 (38%), Positives = 75/161 (46%), Gaps = 45/161 (27%)
Frame = +1
Query: 649 YGNDPPGS-KSSWSGQAPSGYGSAPYG----------------GTGFAAPAQSPSGTAAY 777
Y PPG+ +SSW+ QAPSGYG YG GTG A+ QSPSG A Y
Sbjct: 297 YAGGPPGAPRSSWNSQAPSGYGGVGYGNAASWGSSAGGGAGSGGTGSASSGQSPSGAAGY 356
Query: 778 GNKDFXXXXXXXXXXENQN---------------SYNAGRG------------GHANNSG 876
GN+ + N + NAG G G+ + +G
Sbjct: 357 GNQSYGYGGYGGSEGSYANPTGYGAVGGRTGSGPNSNAGGGELQGSGGGYMGGGYGDANG 416
Query: 877 NSVYTSTAWSSDPSQ-NGNYGTAQASGAPAGQVGYSGGYGA 996
NS Y + AW SDPSQ +GNYG AQ +G GQVGY GGY A
Sbjct: 417 NSGYGNAAWKSDPSQASGNYG-AQTNGPHGGQVGYGGGYSA 456
Score = 73.6 bits (179), Expect = 1e-10
Identities = 35/79 (44%), Positives = 53/79 (67%)
Frame = +3
Query: 153 KIFVGGLPPTLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHK 332
K+F+GG+ +E+ ++YF +YG V+ VVM D+ T RPRGFGF+ F +DRVL +
Sbjct: 7 KLFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILDRVLQE 66
Query: 333 SFHDLNGKNVEVKRALPKD 389
H ++G+ VE KRAL ++
Sbjct: 67 K-HIIDGRTVEAKRALSRE 84
>ref|XP_002528377.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis] gi|223532245|gb|EEF34049.1| Heterogeneous
nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 470
Score = 229 bits (583), Expect = 2e-57
Identities = 117/184 (63%), Positives = 133/184 (72%), Gaps = 12/184 (6%)
Frame = +3
Query: 3 DRVLQDKHTIDGRTVEAKRALSREEQQTSYRSGARGGDRSFGSGGNLKTKKIFVGGLPPT 182
DRVLQDKHTIDGRTVEAK+ALSREEQQT+ RSG R+ GSGGN++TKKIFVGGLPP
Sbjct: 61 DRVLQDKHTIDGRTVEAKKALSREEQQTNARSGNLNPPRNSGSGGNIRTKKIFVGGLPPA 120
Query: 183 LTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHKSFHDLNGKNV 362
LT++ FRQYFEAYG+VTDVV+M+DQNTQRPRGFGFI+FD E+AVDRVLHK+FHDLNGK V
Sbjct: 121 LTDDEFRQYFEAYGLVTDVVIMYDQNTQRPRGFGFISFDNEDAVDRVLHKTFHDLNGKQV 180
Query: 363 EVKRALPKDANXXXXXXXXXXXXXXXXXXXNAGNG------------SYNSQMDGSRYMQ 506
EVKRALPKDAN G SY ++D +RYMQ
Sbjct: 181 EVKRALPKDANPGGGNRSMGGGGNIGGGGGGGAGGYQGYGASGGNASSYEGRIDSNRYMQ 240
Query: 507 PQAT 518
Q T
Sbjct: 241 SQGT 244
Score = 88.6 bits (218), Expect = 3e-15
Identities = 63/159 (39%), Positives = 74/159 (46%), Gaps = 44/159 (27%)
Frame = +1
Query: 649 YGNDPPGS-KSSWSGQAPSGYGSAPYG--------------GTGFAAPAQSPSGTAAYGN 783
Y + PPG+ +SSWS QAPSGYG+ YG G G A QSPSG+A YGN
Sbjct: 303 YASGPPGAPRSSWSSQAPSGYGAMGYGNAASWGANTGAGSGGPGSAPAGQSPSGSAGYGN 362
Query: 784 KDFXXXXXXXXXXE--NQNSYNA--GRGGHANNS------------------------GN 879
+ + N Y+A GR G A NS GN
Sbjct: 363 QGYGYGSYGGNDGSYGNPAGYSAVGGRSGGAPNSNVGAGGELQGSGGGYMGSDYGDANGN 422
Query: 880 SVYTSTAWSSDPSQ-NGNYGTAQASGAPAGQVGYSGGYG 993
Y + W SDPSQ +GNYGT QA+G QVGY GGYG
Sbjct: 423 PGYGTAGWRSDPSQASGNYGT-QANGPHGAQVGYGGGYG 460
Score = 72.4 bits (176), Expect = 3e-10
Identities = 35/79 (44%), Positives = 49/79 (62%)
Frame = +3
Query: 153 KIFVGGLPPTLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHK 332
K+F+GG+ TE+ + YF YG V VVM D+ T RPRGFGF+ F +DRVL
Sbjct: 7 KLFIGGISWETTEDKLKDYFVQYGDVVQTVVMRDKTTGRPRGFGFVVFADPNILDRVLQD 66
Query: 333 SFHDLNGKNVEVKRALPKD 389
H ++G+ VE K+AL ++
Sbjct: 67 K-HTIDGRTVEAKKALSRE 84
>emb|CAN68016.1| hypothetical protein VITISV_025150 [Vitis vinifera]
Length = 464
Score = 229 bits (583), Expect = 2e-57
Identities = 119/178 (66%), Positives = 137/178 (76%), Gaps = 6/178 (3%)
Frame = +3
Query: 3 DRVLQDKHTIDGRTVEAKRALSREEQQTSYRSGARGGDRSFGSGGNLKTKKIFVGGLPPT 182
DRVLQ+KH IDGRTVEAKRALSREEQQTS R+G R+ G GGN+KTKKIFVGGLPPT
Sbjct: 61 DRVLQEKHIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKIFVGGLPPT 120
Query: 183 LTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHKSFHDLNGKNV 362
L+EEGFRQYFEA+G VTDVVVM+DQ+TQRPRGFGF++FDTE+AVDRVL+K+FHDLNGK V
Sbjct: 121 LSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQV 180
Query: 363 EVKRALPKDAN-----XXXXXXXXXXXXXXXXXXXNAGN-GSYNSQMDGSRYMQPQAT 518
EVKRALPKDAN + GN +Y+ +MD +RYMQPQ T
Sbjct: 181 EVKRALPKDANPGGGSRSMGGGAGAVAGGYQGYGASGGNPTTYDGRMDSNRYMQPQNT 238
Score = 92.0 bits (227), Expect = 3e-16
Identities = 61/161 (37%), Positives = 76/161 (47%), Gaps = 45/161 (27%)
Frame = +1
Query: 649 YGNDPPGS-KSSWSGQAPSGYGSAPYG----------------GTGFAAPAQSPSGTAAY 777
Y PPG+ +SSW+ QAPSGYG+ YG GTG A+ QSPSG A Y
Sbjct: 297 YAGGPPGAPRSSWNSQAPSGYGAVGYGNAASWGPSAGGGAGSGGTGSASSGQSPSGAAGY 356
Query: 778 GNKDFXXXXXXXXXXENQN---------------SYNAGRG------------GHANNSG 876
GN+ + N + NAG G G+ + +G
Sbjct: 357 GNQSYGYGGYGGSEGSYANPTGYGAVGGRTGSGPNSNAGGGELQGSGGGYMGGGYGDANG 416
Query: 877 NSVYTSTAWSSDPSQ-NGNYGTAQASGAPAGQVGYSGGYGA 996
NS Y + +W SDPSQ +GNYG AQ +G GQVGY GGY A
Sbjct: 417 NSGYGNASWKSDPSQASGNYG-AQTNGPHGGQVGYGGGYSA 456
Score = 73.6 bits (179), Expect = 1e-10
Identities = 35/79 (44%), Positives = 53/79 (67%)
Frame = +3
Query: 153 KIFVGGLPPTLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHK 332
K+F+GG+ +E+ ++YF +YG V+ VVM D+ T RPRGFGF+ F +DRVL +
Sbjct: 7 KLFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILDRVLQE 66
Query: 333 SFHDLNGKNVEVKRALPKD 389
H ++G+ VE KRAL ++
Sbjct: 67 K-HIIDGRTVEAKRALSRE 84