BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001128
         (1532 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531375.1| RNA and export factor binding protein, putat...   248   4e-63
ref|XP_002284215.1| PREDICTED: RNA and export factor-binding pro...   245   3e-62
ref|XP_004149042.1| PREDICTED: RNA and export factor-binding pro...   242   2e-61
ref|XP_004164149.1| PREDICTED: LOW QUALITY PROTEIN: RNA and expo...   239   1e-60
ref|XP_003539690.1| PREDICTED: RNA and export factor-binding pro...   231   4e-58

>ref|XP_002531375.1| RNA and export factor binding protein, putative [Ricinus communis]
           gi|223529035|gb|EEF31023.1| RNA and export factor
           binding protein, putative [Ricinus communis]
          Length = 247

 Score =  248 bits (632), Expect = 4e-63
 Identities = 146/262 (55%), Positives = 158/262 (60%)
 Frame = +2

Query: 134 MTDGLDMSLEDIIXXXXXXXXXXXXXXXXXXXXXXXXXXXPTRRFQNRGSNRTTPYSMGK 313
           M+  LDMSL+DII                           PTRRF NRG+NR  PY+  K
Sbjct: 1   MSSALDMSLDDIIKSNKKPGSGNSRGRGRSSGPG------PTRRFNNRGTNRAAPYAAAK 54

Query: 314 PVHAPETAWQHDMFIDPXXXXXXXXXXXXXXXXXXXIETGTKLYISNLDYGVSNEDIKEL 493
              APE+ WQHDMF D                    IETGTKLYISNL+YGVSNEDIKEL
Sbjct: 55  ---APESTWQHDMFTDQGGMGMFQGQGGGGSRASG-IETGTKLYISNLEYGVSNEDIKEL 110

Query: 494 FSEVGDLKRYSVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKIEIVGTNI 673
           FSEVGDLKRYS+HYDRSGRSKGTAEVVFSRR+DA AAVKRYNNVQLDGKPMKIEIVGTNI
Sbjct: 111 FSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKIEIVGTNI 170

Query: 674 VTPGALPIAPNGVFGNPNFAPRGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 853
            TP A P A NG FGN N APRGGQ                                  +
Sbjct: 171 ATPAATP-AANGNFGNSNGAPRGGQ----GRGGTMRRPRGASSDGRGFGRGRGRGRGRGE 225

Query: 854 PVSAKDLDAELDKYHSEAMQIN 919
            VSA+DLDA+L+KYHSEAMQ N
Sbjct: 226 KVSAEDLDADLEKYHSEAMQTN 247


>ref|XP_002284215.1| PREDICTED: RNA and export factor-binding protein 2 [Vitis vinifera]
           gi|297746115|emb|CBI16171.3| unnamed protein product
           [Vitis vinifera]
          Length = 243

 Score =  245 bits (625), Expect = 3e-62
 Identities = 143/262 (54%), Positives = 155/262 (59%)
 Frame = +2

Query: 134 MTDGLDMSLEDIIXXXXXXXXXXXXXXXXXXXXXXXXXXXPTRRFQNRGSNRTTPYSMGK 313
           M++ LDMSL+D+I                           P RR  NRG+NR TPYS+ K
Sbjct: 1   MSNALDMSLDDLIKNNKRSGGGGNARGRGRGSGPG-----PARRLPNRGANRITPYSVSK 55

Query: 314 PVHAPETAWQHDMFIDPXXXXXXXXXXXXXXXXXXXIETGTKLYISNLDYGVSNEDIKEL 493
              APET WQHDMF D                    IETGTKLYISNLDYGVSNEDIKEL
Sbjct: 56  ---APETTWQHDMFADQAAAYPAQAGRTSA------IETGTKLYISNLDYGVSNEDIKEL 106

Query: 494 FSEVGDLKRYSVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKIEIVGTNI 673
           FSEVGDLKRYS+HYDRSGRSKGTAEVVFSRR DA AAVKRYNNVQLDGKPMKIEIVGTNI
Sbjct: 107 FSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVGTNI 166

Query: 674 VTPGALPIAPNGVFGNPNFAPRGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 853
            TP A+P   NG FGN N   R  Q                                  +
Sbjct: 167 ATPAAVPPVTNGTFGNSNGGLRSAQ-----GRVGSQGRPRGGSGGRGFGRGRGRGRGRGE 221

Query: 854 PVSAKDLDAELDKYHSEAMQIN 919
            VSA+DLDA+L+KYHSEAMQIN
Sbjct: 222 KVSAEDLDADLEKYHSEAMQIN 243


>ref|XP_004149042.1| PREDICTED: RNA and export factor-binding protein 2-like [Cucumis
           sativus]
          Length = 237

 Score =  242 bits (617), Expect = 2e-61
 Identities = 139/262 (53%), Positives = 160/262 (61%)
 Frame = +2

Query: 134 MTDGLDMSLEDIIXXXXXXXXXXXXXXXXXXXXXXXXXXXPTRRFQNRGSNRTTPYSMGK 313
           M + LDMSL+DII                           P+RRF+NRG NR TPYS  K
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPG-----PSRRFRNRGLNRATPYSTSK 55

Query: 314 PVHAPETAWQHDMFIDPXXXXXXXXXXXXXXXXXXXIETGTKLYISNLDYGVSNEDIKEL 493
              APETAW HDMF+D                    IETGTKLY+SNLDYGVSNEDIKEL
Sbjct: 56  ---APETAWSHDMFVD------HGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKEL 106

Query: 494 FSEVGDLKRYSVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKIEIVGTNI 673
           FSEVGD+KRYS++YD+SGRSKGTAE+VFSR++DA AA+KRYNNVQLDGKPMK+EIVGTNI
Sbjct: 107 FSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNI 166

Query: 674 VTPGALPIAPNGVFGNPNFAPRGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 853
           VTP A+P   N  FGNPN  PRGG+                                  +
Sbjct: 167 VTP-AVPAPSNASFGNPNGFPRGGR----------AMGRNRGGGRGRSGSGSGSGRGHGE 215

Query: 854 PVSAKDLDAELDKYHSEAMQIN 919
            +SA+DLDA+LDKYH EAMQIN
Sbjct: 216 KLSAEDLDADLDKYHEEAMQIN 237


>ref|XP_004164149.1| PREDICTED: LOW QUALITY PROTEIN: RNA and export factor-binding
           protein 2-like [Cucumis sativus]
          Length = 248

 Score =  239 bits (611), Expect = 1e-60
 Identities = 138/263 (52%), Positives = 159/263 (60%), Gaps = 1/263 (0%)
 Frame = +2

Query: 134 MTDGLDMSLEDIIXXXXXXXXXXXXXXXXXXXXXXXXXXXPTRRFQNRGSNRTTPYSMGK 313
           M + LDMSL+DII                           P+RRF+NRG NR TPYS  K
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPG-----PSRRFRNRGLNRATPYSTSK 55

Query: 314 PVHAPETAWQHDMFIDPXXXXXXXXXXXXXXXXXXXIETGTKLYISNLDYGVSNEDIKEL 493
              APETAW HDMF+D                    IETGTKLY+SNLDYGVSNEDIKEL
Sbjct: 56  ---APETAWSHDMFVD------HGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKEL 106

Query: 494 FSEVGDLKRYSVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKIEIVGTNI 673
           FSEVGD+KRYS++YD+SGRSKGTAE+ FSR++DA AA+KRYNNVQLDGKPMK+EIVGTNI
Sbjct: 107 FSEVGDVKRYSINYDKSGRSKGTAEIXFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNI 166

Query: 674 VTPGALPIAPNGVFGNPNFAPRGGQ-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 850
           VTP A+P   N  FGNPN  PRGG+                                   
Sbjct: 167 VTP-AVPAPSNASFGNPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGRGSGSGSGSGRGHG 225

Query: 851 DPVSAKDLDAELDKYHSEAMQIN 919
           + +SA+DLDA+LDKYH EAMQIN
Sbjct: 226 EKLSAEDLDADLDKYHEEAMQIN 248


>ref|XP_003539690.1| PREDICTED: RNA and export factor-binding protein 2-like [Glycine
           max]
          Length = 247

 Score =  231 bits (589), Expect = 4e-58
 Identities = 135/262 (51%), Positives = 153/262 (58%)
 Frame = +2

Query: 134 MTDGLDMSLEDIIXXXXXXXXXXXXXXXXXXXXXXXXXXXPTRRFQNRGSNRTTPYSMGK 313
           M+  +DMSL+DII                           PTRR  NR +NR  PY+   
Sbjct: 1   MSAAMDMSLDDIIKNNKKSGSGSSRGRTRPSGSG------PTRRLPNRAANRAAPYA--- 51

Query: 314 PVHAPETAWQHDMFIDPXXXXXXXXXXXXXXXXXXXIETGTKLYISNLDYGVSNEDIKEL 493
           P  APE  WQHD++ D                    IETGTKLYISNLDYGVSN+DIKEL
Sbjct: 52  PAKAPEATWQHDLYADQHVAAAGYPAQGGRAAS---IETGTKLYISNLDYGVSNDDIKEL 108

Query: 494 FSEVGDLKRYSVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKIEIVGTNI 673
           F+EVGDLKR++VHYDRSGRSKGTAEVVFSRR+DA +AVKRYNNVQLDGKPMKIEIVGTNI
Sbjct: 109 FAEVGDLKRHAVHYDRSGRSKGTAEVVFSRRADAVSAVKRYNNVQLDGKPMKIEIVGTNI 168

Query: 674 VTPGALPIAPNGVFGNPNFAPRGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 853
            TPG  P APNG  GN N  PR GQ                                  +
Sbjct: 169 STPGVAP-APNGAIGNFNGVPRSGQ--GRGGALRRPGGRGQGIRRDRGRGRGRGGGGRGE 225

Query: 854 PVSAKDLDAELDKYHSEAMQIN 919
            VSA DLDA+L+KYH+EAMQ+N
Sbjct: 226 KVSADDLDADLEKYHAEAMQLN 247