BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001074
         (1013 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   368   1e-99
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   348   9e-94
ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]...   344   2e-92
ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]...   343   4e-92
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   341   1e-91

>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Cucumis
            sativus]
          Length = 660

 Score =  368 bits (944), Expect = 1e-99
 Identities = 196/341 (57%), Positives = 245/341 (71%), Gaps = 5/341 (1%)
 Frame = -1

Query: 1010 DLYKDDSDREELAQMTELEREMILSERAQRRDDQRLREGVRAKQVVKK--PQFVKTPDVP 837
            DLYKDD DR +LA M+EL+REMILS+RA +++D+ L E +RAK    K  P   +TP +P
Sbjct: 107  DLYKDDDDRRKLAGMSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLP 166

Query: 836  XXXXXXXXXXXXXXXAKDDALNELRAKRLKQQDPEGHRSSRFRDTGRGNSDRRDTSPVRR 657
                           AKDDALNELRAKRLKQQDPE HR  + RD  RGN++ R  SP +R
Sbjct: 167  SSRIRSSARSADRAAAKDDALNELRAKRLKQQDPEAHR--KLRDASRGNANSRRFSPTKR 224

Query: 656  KPVVAAXXXXXXXXXXXXXXXSRDDGSAGEEDLVDSDEERSNKEED-LTLEDIKETTIRR 480
            KP  A                S D+GS G+  ++DSD+ERS    D  T EDIKE TIRR
Sbjct: 225  KPFTAPSLSSSSQSESESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRR 284

Query: 479  SKLAKWFMEPFFEELIVGCFVRVGIGKREHKAYYRLCIVKNVDATEPNKQYRLENKSTHK 300
            SKLAKW MEPFFEELIVGCFVRVGIG+      YRLC+V+NVDATEP++QY+LENK THK
Sbjct: 285  SKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHK 344

Query: 299  YLSVTWGR--SEARWQMAVISESPPLQSEFDEWVRAMKKDGVRIPSRQDVMEKQEAIQKA 126
            YL+V WG   S ARWQMA++S+S PL+ E+ +WV+ +++ G R+ S+QD++EK+EAIQK 
Sbjct: 345  YLNVIWGNEASAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKV 404

Query: 125  ISYVYSSETVKIMLQEKKSASSRPLNIAAEKERLRREMEVA 3
             ++VYS+ TVK MLQ+KKSAS+RPLNIAAEK+RLRREM+VA
Sbjct: 405  NNFVYSAATVKQMLQDKKSASARPLNIAAEKDRLRREMDVA 445


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  348 bits (894), Expect = 9e-94
 Identities = 185/340 (54%), Positives = 244/340 (71%), Gaps = 4/340 (1%)
 Frame = -1

Query: 1010 DLYKDDSDREELAQMTELEREMILSERAQRRDDQRLREGVRAKQVVKKPQFVKTPDVPXX 831
            DLYKD+ DR +L++MTEL+REMILS+RA ++DD+ L   + +K+   K    +    P  
Sbjct: 106  DLYKDEDDRRKLSEMTELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPPMS 165

Query: 830  XXXXXXXXXXXXXA-KDDALNELRAKRLKQQDPEGHRSSRFRDTGRGNSDRRDTSPVRRK 654
                         + K+DALNELRAKRLKQQDPE HR  R R+  R N+  R  SP +RK
Sbjct: 166  SSRMRASARSADRSAKNDALNELRAKRLKQQDPEAHR--RLREASR-NAGSRHFSPPKRK 222

Query: 653  PVVAAXXXXXXXXXXXXXXXSRDDGSAGEEDLVDSDEERSNK-EEDLTLEDIKETTIRRS 477
            P  +                S D+GS G+  +VDSD++R+    E  + +D+KE TIRRS
Sbjct: 223  PFTSTSLSSSSHSESESRSHSDDEGSTGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRS 282

Query: 476  KLAKWFMEPFFEELIVGCFVRVGIGKREHKAYYRLCIVKNVDATEPNKQYRLENKSTHKY 297
            KLAKWFMEPFFEELIVGCFVRVGIG+ +    YRLC+VKNVDA+EP++QY+LENK+T+KY
Sbjct: 283  KLAKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKY 342

Query: 296  LSVTWGR--SEARWQMAVISESPPLQSEFDEWVRAMKKDGVRIPSRQDVMEKQEAIQKAI 123
            L+V WG   S ARWQMA++S+S PL+ EF +WV+ + + G R+PS+QDV+EK++AIQKAI
Sbjct: 343  LNVVWGNESSAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAI 402

Query: 122  SYVYSSETVKIMLQEKKSASSRPLNIAAEKERLRREMEVA 3
            ++VYS+ TVK MLQEKKSAS+RPLN+AAEK+RLRRE+E+A
Sbjct: 403  TFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEIA 442


>ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]
            gi|222859693|gb|EEE97240.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 664

 Score =  344 bits (882), Expect = 2e-92
 Identities = 182/342 (53%), Positives = 242/342 (70%), Gaps = 6/342 (1%)
 Frame = -1

Query: 1010 DLYKDDSDREELAQMTELEREMILSERAQRRDDQRLREGVRAKQVVKKPQFVK--TPDVP 837
            DLYKD+ DR++LAQM+EL+RE+IL++RA ++ D+ L E +R+K+   KP   +  TP +P
Sbjct: 108  DLYKDEDDRQKLAQMSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLP 167

Query: 836  XXXXXXXXXXXXXXXA-KDDALNELRAKRLKQQDPEGHRSSRFRDTGRGNSDRRDTSPVR 660
                           A KDDALNELRAKRLKQQDPE HR  + RD  RG++  R  + V+
Sbjct: 168  SSRGVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHR--KLRDASRGSAGSRGFAQVK 225

Query: 659  RKPVVAAXXXXXXXXXXXXXXXS-RDDGSAGEEDLVDSDEERSNKEEDLTLEDIKETTIR 483
            +    +A                  D+GS G+  + DSDE+        T EDIKE TIR
Sbjct: 226  KNNFTSARLSSSSSESESGSRSHSEDEGSTGDGGMADSDEDGDPGSRGPTYEDIKEITIR 285

Query: 482  RSKLAKWFMEPFFEELIVGCFVRVGIGKREHKAYYRLCIVKNVDATEPNKQYRLENKSTH 303
            R+KLAKWFMEP+FEELI+GCFVRVGIG+ +    YRLC+V+NVDA EP+K Y+LENKST+
Sbjct: 286  RTKLAKWFMEPWFEELIIGCFVRVGIGRSKTGPVYRLCMVRNVDAAEPDKPYKLENKSTY 345

Query: 302  KYLSVTWG--RSEARWQMAVISESPPLQSEFDEWVRAMKKDGVRIPSRQDVMEKQEAIQK 129
            KYL+VTWG   S ARWQMA++S+S P + E+ +WVR  ++ G R+PS+QD++EK+EAI+K
Sbjct: 346  KYLNVTWGADSSAARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRK 405

Query: 128  AISYVYSSETVKIMLQEKKSASSRPLNIAAEKERLRREMEVA 3
            + ++VYS+ TVK MLQEKKSASSRPLN+AAEK+RLRRE+E+A
Sbjct: 406  SNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEIA 447


>ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 662

 Score =  343 bits (880), Expect = 4e-92
 Identities = 183/341 (53%), Positives = 242/341 (70%), Gaps = 5/341 (1%)
 Frame = -1

Query: 1010 DLYKDDSDREELAQMTELEREMILSERAQRRDDQRLREGVRAKQVVKKPQFVK--TPDVP 837
            DLYKD+ DR++LAQM+EL+RE+IL++RA ++ D+ L E +R K+   KP   +  TP +P
Sbjct: 108  DLYKDEDDRKKLAQMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLP 167

Query: 836  XXXXXXXXXXXXXXXA-KDDALNELRAKRLKQQDPEGHRSSRFRDTGRGNSDRRDTSPVR 660
                           A KDDALNELRAKRLKQQDPE HR  + RD  RG++  R  S V+
Sbjct: 168  SSRGVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHR--KLRDVSRGSAGSRGFSQVK 225

Query: 659  RKPVVAAXXXXXXXXXXXXXXXSRDDGSAGEEDLVDSDEERSNKEEDLTLEDIKETTIRR 480
            +    +A                 D+GS G+  + DSDE+     +  T EDIKE TIRR
Sbjct: 226  KNNFTSASLSSSSSESGSRSHS-EDEGSTGDGGMADSDEDVEPGSKGPTYEDIKEITIRR 284

Query: 479  SKLAKWFMEPFFEELIVGCFVRVGIGKREHKAYYRLCIVKNVDATEPNKQYRLENKSTHK 300
            +KLAKWFMEP+FEELI+GCFVRVGIG+ +    YRLC+V+NVDA EP+K Y+LENKST+K
Sbjct: 285  TKLAKWFMEPWFEELIIGCFVRVGIGRSKSGPVYRLCMVRNVDAAEPDKPYKLENKSTYK 344

Query: 299  YLSVTWG--RSEARWQMAVISESPPLQSEFDEWVRAMKKDGVRIPSRQDVMEKQEAIQKA 126
            YL+VTWG   S ARWQMA++S+S P + E+ +WVR ++  G R+PS+QD++EK+EAI+K+
Sbjct: 345  YLNVTWGADTSAARWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKS 404

Query: 125  ISYVYSSETVKIMLQEKKSASSRPLNIAAEKERLRREMEVA 3
             ++VYS+ TVK MLQEKKSASSRPLN+AAEK+RLRRE+E+A
Sbjct: 405  NTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEIA 445


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  341 bits (875), Expect = 1e-91
 Identities = 183/340 (53%), Positives = 241/340 (70%), Gaps = 4/340 (1%)
 Frame = -1

Query: 1010 DLYKDDSDREELAQMTELEREMILSERAQRRDDQRLREGVRAKQVVKKPQFVKTPDVPXX 831
            DLYKD+ DR +L++MTEL+REMILS+RA ++DD+ L   + +K+   K    +    P  
Sbjct: 106  DLYKDEDDRRKLSEMTELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPPMS 165

Query: 830  XXXXXXXXXXXXXA-KDDALNELRAKRLKQQDPEGHRSSRFRDTGRGNSDRRDTSPVRRK 654
                         + K+DALNELRAKRLKQQDPE HR  R R+  R N+  R  SP +RK
Sbjct: 166  SSRMRASARSADRSAKNDALNELRAKRLKQQDPEAHR--RLREASR-NAGPRHFSPPKRK 222

Query: 653  PVVAAXXXXXXXXXXXXXXXSRDDGSAGEEDLVDSDEERSNK-EEDLTLEDIKETTIRRS 477
               +                S D+GS G+  + DSD++R+    E  + +DIKE TIRRS
Sbjct: 223  TFTSTSLSSSSHSESESRSHSDDEGSTGDGGIADSDDDRALAGSEGPSFQDIKEITIRRS 282

Query: 476  KLAKWFMEPFFEELIVGCFVRVGIGKREHKAYYRLCIVKNVDATEPNKQYRLENKSTHKY 297
            KLAKWFMEPFFEELIVGCFVRVGIG+ +    YRLC+VKNVDA+EP++QY+LENK+T+KY
Sbjct: 283  KLAKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKY 342

Query: 296  LSVTWGR--SEARWQMAVISESPPLQSEFDEWVRAMKKDGVRIPSRQDVMEKQEAIQKAI 123
            L+V WG   S ARWQMA++S+S P++ EF +WV+ +   G R+PS+QDV+EK++AIQKAI
Sbjct: 343  LNVVWGNESSAARWQMAMVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAI 402

Query: 122  SYVYSSETVKIMLQEKKSASSRPLNIAAEKERLRREMEVA 3
            ++VYS+ TVK MLQEKKSAS+RPLN+AAEK+RLRRE+E+A
Sbjct: 403  TFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEIA 442