BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001073
         (1414 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854...   279   1e-72
ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]...   276   1e-71
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   273   1e-70
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   256   1e-65
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   253   7e-65

>ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854406 [Vitis vinifera]
          Length = 493

 Score =  279 bits (713), Expect = 1e-72
 Identities = 156/246 (63%), Positives = 177/246 (71%), Gaps = 3/246 (1%)
 Frame = -3

Query: 782 KEKKSASSRPLNIAAEKERLRREMEVAESKRNKAEVERIQARLKELEAISKQKKGLDTKA 603
           +EKKS SSRPLNI AEK+RLRREMEVA SK ++AEVERI  RL++LEA S++ K  D KA
Sbjct: 251 QEKKSVSSRPLNIVAEKDRLRREMEVALSKHDQAEVERINTRLQQLEA-SRRSKEKDAKA 309

Query: 602 VRLAEMNKKNRAENFKMASEKKAINTDLKEGEEGYDPFSRRWTRSRNYYVSNTAGGDEAA 423
           +RLAEMN+KNRAENFK ASE K +NT LK GE GYDPFSRRWTRSRNYYVS   GGDEAA
Sbjct: 310 IRLAEMNRKNRAENFKNASESKRVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGGGDEAA 369

Query: 422 ASANGDXXXXXXXXXXXXXXXXXXXXXXGLSTTXXXXXXXXXAGKLVDTNAPVDQGTVSN 243
           A ANG+                      G++ T         AGKLVDT+APVDQGT SN
Sbjct: 370 AVANGE--APAAFVGAGSNGTGGKGAEVGVAATAAALEAAADAGKLVDTSAPVDQGTESN 427

Query: 242 SLHRFQLEIS---LDNFEAVAGFRKGYMARKQRIEATIGRKVPENDGKRHALTLTVGDYK 72
           +LH F+L IS   L  F    G   G+MARKQRIEAT+G +VPENDG+RHALTLTVGDYK
Sbjct: 428 TLHDFELPISLAGLQKFGGPQGALAGFMARKQRIEATVGCRVPENDGRRHALTLTVGDYK 487

Query: 71  RRRGLL 54
           RRRGLL
Sbjct: 488 RRRGLL 493


>ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]
            gi|222859693|gb|EEE97240.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 664

 Score =  276 bits (705), Expect = 1e-71
 Identities = 151/246 (61%), Positives = 180/246 (73%), Gaps = 3/246 (1%)
 Frame = -3

Query: 782  KEKKSASSRPLNIAAEKERLRREMEVAESKRNKAEVERIQARLKELEAISKQKKGLDTKA 603
            +EKKSASSRPLN+AAEK+RLRRE+E+A+S+ ++AEVERI+AR+ ELEA S+Q K  D KA
Sbjct: 421  QEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARILELEA-SRQAKVKDAKA 479

Query: 602  VRLAEMNKKNRAENFKMASEKKAINTDLKEGEEGYDPFSRRWTRSRNYYVSNTAGGDEAA 423
            +RLAEMN+KNR ENF+ ASE K INT LK GE GYDPFSRRWTRSRNYYVSN AGGD+A 
Sbjct: 480  LRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAGGDDAV 539

Query: 422  ASANGDXXXXXXXXXXXXXXXXXXXXXXGLSTTXXXXXXXXXAGKLVDTNAPVDQGTVSN 243
            A++N +                      G++ T         AGKLVDT+APVDQGT SN
Sbjct: 540  AASNSE-ANDTAALADSDHVVAGAISESGVAATAAALDAAADAGKLVDTSAPVDQGTESN 598

Query: 242  SLHRFQLEIS---LDNFEAVAGFRKGYMARKQRIEATIGRKVPENDGKRHALTLTVGDYK 72
            ++H F+LEIS   L  F    G   G+MARKQRIEA +G +V ENDG+RHALTLTVGDYK
Sbjct: 599  TMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEANVGCQVRENDGRRHALTLTVGDYK 658

Query: 71   RRRGLL 54
            RRRGLL
Sbjct: 659  RRRGLL 664


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  273 bits (697), Expect = 1e-70
 Identities = 153/246 (62%), Positives = 177/246 (71%), Gaps = 3/246 (1%)
 Frame = -3

Query: 782  KEKKSASSRPLNIAAEKERLRREMEVAESKRNKAEVERIQARLKELEAISKQKKGLDTKA 603
            +EKKSASSRPLN+AAEK+RLRRE+EVA+SK++ AEVERI+AR++ELEA S+Q +G D KA
Sbjct: 418  QEKKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELEA-SRQTQGKDAKA 476

Query: 602  VRLAEMNKKNRAENFKMASEKKAINTDLKEGEEGYDPFSRRWTRSRNYYVSNTAGGDEAA 423
            +RLAEMN+KNRAENF+ ASE K +NT LK GE GYDPFSRRWTRSRNYYVS  AGGD AA
Sbjct: 477  IRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGGDAAA 536

Query: 422  ASANGDXXXXXXXXXXXXXXXXXXXXXXGLSTTXXXXXXXXXAGKLVDTNAPVDQGTVSN 243
            A+ N                        G++ T         AGKLVDT APVDQGT SN
Sbjct: 537  ATNN--EASGTVAVANKTESAAGVSAEAGMAATAAALEAAADAGKLVDTAAPVDQGTESN 594

Query: 242  SLHRFQLEIS---LDNFEAVAGFRKGYMARKQRIEATIGRKVPENDGKRHALTLTVGDYK 72
            +LH F+L IS   L  F    G + G+MARKQRIEATIG +V END KRH LTLTV DYK
Sbjct: 595  TLHNFELPISLTALQKFGGAQGAQAGFMARKQRIEATIGCRVSENDEKRHVLTLTVSDYK 654

Query: 71   RRRGLL 54
            RRRGLL
Sbjct: 655  RRRGLL 660


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Cucumis
            sativus]
          Length = 660

 Score =  256 bits (654), Expect = 1e-65
 Identities = 147/246 (59%), Positives = 174/246 (70%), Gaps = 3/246 (1%)
 Frame = -3

Query: 782  KEKKSASSRPLNIAAEKERLRREMEVAESKRNKAEVERIQARLKELEAISKQKKGLDTKA 603
            ++KKSAS+RPLNIAAEK+RLRREM+VA SK ++AEVERI+ RL++LEA S++ +  D KA
Sbjct: 419  QDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEA-SRRLQMKDAKA 477

Query: 602  VRLAEMNKKNRAENFKMASEKKAINTDLKEGEEGYDPFSRRWTRSRNYYVSNTAGGDEAA 423
            +RLAEMN+KNR ENFK ASE + +  DLK GE GYDPFSRRWTRSRNYYVSN AG    A
Sbjct: 478  IRLAEMNRKNRVENFKNASELRPLK-DLKAGEAGYDPFSRRWTRSRNYYVSN-AGEANGA 535

Query: 422  ASANGDXXXXXXXXXXXXXXXXXXXXXXGLSTTXXXXXXXXXAGKLVDTNAPVDQGTVSN 243
            A A G+                       ++ T         AGKLVDTNAPVD GT SN
Sbjct: 536  AEAAGNSDNVTPALENTRTEAGGTSDAG-MAATAAALEAAAGAGKLVDTNAPVDGGTESN 594

Query: 242  SLHRFQLEISL---DNFEAVAGFRKGYMARKQRIEATIGRKVPENDGKRHALTLTVGDYK 72
            SLH F+L ISL     F    G + G++ARKQRIEAT+GR+VPENDG+RHALTLTV DYK
Sbjct: 595  SLHNFELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYK 654

Query: 71   RRRGLL 54
            RRRGLL
Sbjct: 655  RRRGLL 660


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  253 bits (647), Expect = 7e-65
 Identities = 144/256 (56%), Positives = 172/256 (67%), Gaps = 13/256 (5%)
 Frame = -3

Query: 782  KEKKSASSRPLNIAAEKERLRREMEVAESKRNKAEVERIQARLKELEAISKQKKGLDTKA 603
            +EKKSAS+RPLN+AAEK+RLRRE+E+A+SK ++AEVERI+ RL ELEA S+Q K  D KA
Sbjct: 416  QEKKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELEA-SRQAKQKDAKA 474

Query: 602  VRLAEMNKKNRAENFKMASEKKAINTDLKEGEEGYDPFSRRWTRSRNYYVS--------- 450
            ++LAEMN+KNR ENFK ASE K +NT LK GE GYDPFSRRWTRSRNYY +         
Sbjct: 475  LKLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAG 534

Query: 449  -NTAGGDEAAASANGDXXXXXXXXXXXXXXXXXXXXXXGLSTTXXXXXXXXXAGKLVDTN 273
             N+  G+ A A +NG                        +  T         AGKLVDT+
Sbjct: 535  NNSVNGNVAGAGSNGTGAPVTAEAG--------------MVATAAALEAAAGAGKLVDTS 580

Query: 272  APVDQGTVSNSLHRFQLEISL---DNFEAVAGFRKGYMARKQRIEATIGRKVPENDGKRH 102
            APVDQGT SN LH F+L ISL     F    G + G+MARKQ+IEAT+G +V ENDG+RH
Sbjct: 581  APVDQGTESNMLHNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDGRRH 640

Query: 101  ALTLTVGDYKRRRGLL 54
            ALTLTV DYKRRRGLL
Sbjct: 641  ALTLTVSDYKRRRGLL 656