BLASTX nr result
ID: Coptis24_contig00001046
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00001046
(1237 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002324348.1| predicted protein [Populus trichocarpa] gi|2... 87 2e-37
ref|XP_002308717.1| f-box family protein [Populus trichocarpa] g... 84 1e-35
emb|CBI38325.3| unnamed protein product [Vitis vinifera] 85 1e-33
ref|XP_002270412.1| PREDICTED: F-box protein PP2-B1-like [Vitis ... 85 1e-33
ref|XP_002270549.1| PREDICTED: F-box protein PP2-B1 [Vitis vinif... 90 8e-32
>ref|XP_002324348.1| predicted protein [Populus trichocarpa] gi|222865782|gb|EEF02913.1|
predicted protein [Populus trichocarpa]
Length = 304
Score = 87.4 bits (215), Expect(3) = 2e-37
Identities = 40/65 (61%), Positives = 49/65 (75%)
Frame = -3
Query: 365 PALSSATRYEGQFPSERRDGWLEIELGDFYNEQGEDGVVEMSLQEVKAGYWKAELIVEGI 186
PA A GQ+P +R DGWLEIELG+F+ ++GED +EMS+QEVK G WK LIVEGI
Sbjct: 237 PASEPARENNGQYPKKREDGWLEIELGEFFCKEGEDRELEMSVQEVKGGDWKGGLIVEGI 296
Query: 185 EVRPK 171
E+RPK
Sbjct: 297 EIRPK 301
Score = 86.7 bits (213), Expect(3) = 2e-37
Identities = 37/65 (56%), Positives = 47/65 (72%)
Frame = -1
Query: 766 LDKMSGKKCFMIGEKELKITWSDTPQYWKWIPLPDSRFAEAAELINVCWLHIKVEIDTQI 587
L+K SGKKC+M+ ++L I W DTP YWKW P SRF E AELI+VCWL I+ +I+ +
Sbjct: 104 LEKKSGKKCYMLSARDLIIVWGDTPTYWKWNSDPSSRFGEVAELISVCWLEIRGKINATM 163
Query: 586 LSPTT 572
LSP T
Sbjct: 164 LSPAT 168
Score = 30.4 bits (67), Expect(3) = 2e-37
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = -2
Query: 564 YEAYLVIKFSDQACGLEDPPAEISVKFLGGGGSASGERTVFLDPE 430
Y AYLV + + GL+ P E+ V G GS G R V+LD E
Sbjct: 170 YTAYLVFRPTRGLYGLDYQPVEVGV---GLVGSECGMRNVYLDSE 211
>ref|XP_002308717.1| f-box family protein [Populus trichocarpa]
gi|222854693|gb|EEE92240.1| f-box family protein
[Populus trichocarpa]
Length = 292
Score = 84.0 bits (206), Expect(3) = 1e-35
Identities = 38/60 (63%), Positives = 47/60 (78%)
Frame = -3
Query: 350 ATRYEGQFPSERRDGWLEIELGDFYNEQGEDGVVEMSLQEVKAGYWKAELIVEGIEVRPK 171
A+ GQ P ER DGWLEIELG+F+ ++GEDG +EM +QEVK+G WK L VEGIE+RPK
Sbjct: 231 ASENNGQHPKERGDGWLEIELGEFFCKEGEDGELEMRVQEVKSGDWKGGLTVEGIEIRPK 290
Score = 79.0 bits (193), Expect(3) = 1e-35
Identities = 35/65 (53%), Positives = 43/65 (66%)
Frame = -1
Query: 766 LDKMSGKKCFMIGEKELKITWSDTPQYWKWIPLPDSRFAEAAELINVCWLHIKVEIDTQI 587
L K SGKKC+M+ ++L I W DTP YW+W SRF E AELI VCWL I +I+ +
Sbjct: 93 LVKKSGKKCYMLSARDLMIVWGDTPTYWRWNSDSSSRFGEVAELIGVCWLEICGKINATM 152
Query: 586 LSPTT 572
LSP T
Sbjct: 153 LSPAT 157
Score = 35.4 bits (80), Expect(3) = 1e-35
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = -2
Query: 564 YEAYLVIKFSDQACGLEDPPAEISVKFLGGGGSASGERTVFLDPE 430
Y AYLV K + A GL+ P E+ V G GS +G+R V+LD +
Sbjct: 159 YAAYLVFKPKEGAYGLDYQPVEVGV---GLVGSENGKRNVYLDSQ 200
>emb|CBI38325.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 85.1 bits (209), Expect(3) = 1e-33
Identities = 36/61 (59%), Positives = 44/61 (72%)
Frame = -1
Query: 766 LDKMSGKKCFMIGEKELKITWSDTPQYWKWIPLPDSRFAEAAELINVCWLHIKVEIDTQI 587
++K SGKKC+MI + L I W DTP YWKWI LP SRF E AELI+VCW I+ I+T +
Sbjct: 133 IEKRSGKKCYMIAARALTIEWGDTPMYWKWISLPQSRFKEVAELISVCWFEIRGRINTCL 192
Query: 586 L 584
L
Sbjct: 193 L 193
Score = 74.7 bits (182), Expect(3) = 1e-33
Identities = 34/54 (62%), Positives = 44/54 (81%)
Frame = -3
Query: 332 QFPSERRDGWLEIELGDFYNEQGEDGVVEMSLQEVKAGYWKAELIVEGIEVRPK 171
Q P +R DGWLEIELG+F+NE G++ + EMS+ EVKAG WK LI++GIE+RPK
Sbjct: 257 QHPKKREDGWLEIELGEFFNEGGDEEL-EMSVLEVKAGNWKCGLIIQGIEIRPK 309
Score = 31.2 bits (69), Expect(3) = 1e-33
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 567 SYEAYLVIKFSDQACGLEDPPAEISVKFLGGGGSASGERTVFLDP 433
+Y AYLV + + G E P E+S+ +GG S ++V+L+P
Sbjct: 198 NYAAYLVFNSTTETYGFEYHPVEVSIGIIGGRIST---QSVYLNP 239
>ref|XP_002270412.1| PREDICTED: F-box protein PP2-B1-like [Vitis vinifera]
Length = 299
Score = 85.1 bits (209), Expect(3) = 1e-33
Identities = 36/61 (59%), Positives = 44/61 (72%)
Frame = -1
Query: 766 LDKMSGKKCFMIGEKELKITWSDTPQYWKWIPLPDSRFAEAAELINVCWLHIKVEIDTQI 587
++K SGKKC+MI + L I W DTP YWKWI LP SRF E AELI+VCW I+ I+T +
Sbjct: 99 IEKRSGKKCYMIAARALTIEWGDTPMYWKWISLPQSRFKEVAELISVCWFEIRGRINTCL 158
Query: 586 L 584
L
Sbjct: 159 L 159
Score = 74.7 bits (182), Expect(3) = 1e-33
Identities = 34/54 (62%), Positives = 44/54 (81%)
Frame = -3
Query: 332 QFPSERRDGWLEIELGDFYNEQGEDGVVEMSLQEVKAGYWKAELIVEGIEVRPK 171
Q P +R DGWLEIELG+F+NE G++ + EMS+ EVKAG WK LI++GIE+RPK
Sbjct: 244 QHPKKREDGWLEIELGEFFNEGGDEEL-EMSVLEVKAGNWKCGLIIQGIEIRPK 296
Score = 31.2 bits (69), Expect(3) = 1e-33
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 567 SYEAYLVIKFSDQACGLEDPPAEISVKFLGGGGSASGERTVFLDP 433
+Y AYLV + + G E P E+S+ +GG S ++V+L+P
Sbjct: 164 NYAAYLVFNSTTETYGFEYHPVEVSIGIIGGRIST---QSVYLNP 205
>ref|XP_002270549.1| PREDICTED: F-box protein PP2-B1 [Vitis vinifera]
Length = 306
Score = 89.7 bits (221), Expect(3) = 8e-32
Identities = 40/65 (61%), Positives = 47/65 (72%)
Frame = -1
Query: 766 LDKMSGKKCFMIGEKELKITWSDTPQYWKWIPLPDSRFAEAAELINVCWLHIKVEIDTQI 587
LDK SGKKC+M+ ++L ITWSDTP YW WI LP SRF E A L VCWL IK +I+T +
Sbjct: 110 LDKKSGKKCYMLAARDLTITWSDTPMYWTWISLPHSRFIEVANLNQVCWLEIKGKINTGM 169
Query: 586 LSPTT 572
LS T
Sbjct: 170 LSSMT 174
Score = 65.1 bits (157), Expect(3) = 8e-32
Identities = 26/50 (52%), Positives = 41/50 (82%)
Frame = -3
Query: 320 ERRDGWLEIELGDFYNEQGEDGVVEMSLQEVKAGYWKAELIVEGIEVRPK 171
+R DGW E+ELG+F++ +G+ +E+S+ EVK+G WK+ L++EGIE+RPK
Sbjct: 254 KRIDGWYEVELGEFFSGEGKGKELEISVMEVKSGNWKSGLLIEGIEIRPK 303
Score = 30.4 bits (67), Expect(3) = 8e-32
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = -2
Query: 573 LPSYEAYLVIKFSDQACGLEDPPAEISVKFLGGGGSASGERTVFLD 436
+ +Y +LV + +D+ GL++ P E SV +GG + +R ++LD
Sbjct: 173 MTNYVVFLVFQRNDRFYGLKNVPVESSVGMIGG---VTTKRVIYLD 215