BLASTX nr result
ID: Coptis24_contig00001036
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00001036
(2565 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002534335.1| RNA binding protein, putative [Ricinus commu... 717 0.0
ref|XP_002270665.1| PREDICTED: zinc finger CCCH domain-containin... 697 0.0
ref|XP_002320513.1| predicted protein [Populus trichocarpa] gi|2... 683 0.0
emb|CBI28414.3| unnamed protein product [Vitis vinifera] 626 e-177
ref|XP_002529054.1| RNA binding protein, putative [Ricinus commu... 569 e-159
>ref|XP_002534335.1| RNA binding protein, putative [Ricinus communis]
gi|223525472|gb|EEF28048.1| RNA binding protein, putative
[Ricinus communis]
Length = 578
Score = 717 bits (1850), Expect = 0.0
Identities = 364/586 (62%), Positives = 436/586 (74%), Gaps = 2/586 (0%)
Frame = +1
Query: 388 MDFTEATKTVYDRIQTLEPDHVSKIIGYLLLQDNGERDMIRLAFGPDISIQSLITQAKLE 567
MDFTE+TK VY+RIQ LEP++VSKIIGYLLLQD+ ER+MIRLAF PD I SLIT+AK +
Sbjct: 1 MDFTESTKVVYNRIQKLEPENVSKIIGYLLLQDHSEREMIRLAFSPDNLIYSLITKAKSD 60
Query: 568 LGLSPKPGISAPIPPASMNLAPTSDLPLQFTXXXXXXXXXXXXXX-TLRVAPPYWDPLVM 744
LGL+ KP +SAPI P+ +N +P SD+PLQFT + R A YWD V
Sbjct: 61 LGLN-KPALSAPISPSQVNTSPVSDIPLQFTPFSPASAHPISSPAASRRTASAYWDAQVT 119
Query: 745 VDQQPLHNMDFISPAYSDTVSDDYRFHNQAQFLSLEDQLDAVNHSGHDFSSNFFYPDGTL 924
DQQ + N+DF SP YSDTV +DYR N QFL+L+DQ + + DFSSN+FY + L
Sbjct: 120 GDQQQVPNLDFGSPGYSDTVPEDYRLQNHMQFLTLDDQFEFAHSVNSDFSSNYFYSEPAL 179
Query: 925 GNMSARTSRRSPSLPEFPVKACHYFNKGFCKHGSSCRYFHGQPVPDSFSQIFSPNSNDLI 1104
G RT+RRSPSLPEFP+K CHYF+KG+CKHG++CRY HG P+P+ FSQIFS SND
Sbjct: 180 G---PRTNRRSPSLPEFPLKICHYFSKGYCKHGNNCRYVHGHPMPEGFSQIFSTKSNDFS 236
Query: 1105 TDDHFL-PGSXXXXXXXXXXXXXSRRGCPVSIASLPLLYQEKYGRTLQAEGYLTESQRHG 1281
D+H + PGS SRRG PVSIASLP++Y EKYG+TLQAEGYLTESQRHG
Sbjct: 237 NDEHVVSPGSLEKLEMELAELLKSRRGMPVSIASLPMMYYEKYGKTLQAEGYLTESQRHG 296
Query: 1282 KAGYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAPRYMEYRNDRSDPGGVVAGSRQIYL 1461
KAGYSLTKLLARLKNSIR+IDRPHGQH+V+L ED P+Y+EY +R+DPGG+VAGSRQIYL
Sbjct: 297 KAGYSLTKLLARLKNSIRVIDRPHGQHSVILEEDVPKYLEYVGERNDPGGIVAGSRQIYL 356
Query: 1462 TFPAESTFTEEDVSNYFKNFGPVQDVRIPCQQKRMFGFVTFLYPETVKIILTKGNPHFVC 1641
TFPAES FTE DVS YF FGPVQDVRIPCQQKRMFGFVTF++ ETVK IL KGNPH+VC
Sbjct: 357 TFPAESIFTEHDVSIYFSKFGPVQDVRIPCQQKRMFGFVTFIFVETVKQILAKGNPHYVC 416
Query: 1642 GARVLVKPYREKSRLVDRKYNEKSDSPLYYPSNFLDMEPEMQIAPRLCDTSRLLRKQFME 1821
GARVLVKPYREKSRL+DRK++EK P+Y S+F+D + E+ P + D SRLLRKQ ME
Sbjct: 417 GARVLVKPYREKSRLIDRKFSEKLQHPMYNSSHFIDGDSELHPMPTISDNSRLLRKQLME 476
Query: 1822 DHXXXXXXXXXXXXXXXXGHRPLAHQPYFGYSMDDLKVSDAHRDQSEFTSRDRFNYLFDV 2001
++ G + L HQ Y G SMD+LK+S+ H +EF S +RFNYL DV
Sbjct: 477 ENEHALEFERRRLLEFHLGPKSLNHQSYLGCSMDELKLSEEH---AEFPSAERFNYLLDV 533
Query: 2002 FNNGSTSDDKGRHSNSNNYSDQESQGLNLPESPFASPMGSSISTVI 2139
NNGS+S+ K R S NY+DQ+SQG+NLPESPFASP+ S ISTV+
Sbjct: 534 LNNGSSSEGKFRRI-STNYNDQDSQGINLPESPFASPIRSGISTVM 578
>ref|XP_002270665.1| PREDICTED: zinc finger CCCH domain-containing protein 18-like [Vitis
vinifera]
Length = 572
Score = 697 bits (1800), Expect = 0.0
Identities = 365/591 (61%), Positives = 433/591 (73%), Gaps = 8/591 (1%)
Frame = +1
Query: 388 MDFTEATKTVYDRIQTLEPDHVSKIIGYLLLQDNGERDMIRLAFGPDISIQSLITQAKLE 567
MDF+E+TK VY+RIQ LEP++VSKIIGYLLLQD+GERDMIR AF D +IQ LI +AK E
Sbjct: 1 MDFSESTKVVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRRAFTSDNAIQCLINKAKAE 60
Query: 568 LGLSPKPGISAPIPPASMNLAPTSDLPLQFTXXXXXXXXXXXXXXTLRVAPPYWDPLVMV 747
LGLS KP +S+PI P +N +P SDLPLQFT R YWDP V
Sbjct: 61 LGLSSKPAVSSPISPPQVNPSPVSDLPLQFTPFSPASARPFPSP---RPGNSYWDPQVNG 117
Query: 748 DQQPLHNM-DFISPAYSDTVSDDYRFHNQAQFLSLEDQLDAVNHSGHDFSSNFFYPDGTL 924
DQQ +H + DF+ YSD++ DD+R +Q FL++EDQL+ N G +FS +++Y + L
Sbjct: 118 DQQQVHKLGDFVPQGYSDSLPDDFRLQSQIHFLAMEDQLE--NSVGSEFSGSYYYAEQAL 175
Query: 925 GNMSARTSRRSPSLPEFPVKACHYFNKGFCKHGSSCRYFHGQPVPDSFSQIFSPNSNDLI 1104
+ R SRRSPSLPEFP+K CHYFNKGFCKHG+SCRYFHG P+ +SFSQIFSP +N+L
Sbjct: 176 ---NTRISRRSPSLPEFPLKVCHYFNKGFCKHGNSCRYFHGHPMLESFSQIFSPGANELP 232
Query: 1105 TDDH-FLPGSXXXXXXXXXXXXXSRRGCPVSIASLPLLYQEKYGRTLQAEGYLTESQRHG 1281
DDH F PGS SRRGCPVSIASLP++Y EKYGRTLQAEGYLTESQRHG
Sbjct: 233 NDDHVFPPGSLEKLELELTELLKSRRGCPVSIASLPMMYYEKYGRTLQAEGYLTESQRHG 292
Query: 1282 KAGYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAPRYMEYRNDRSDPGGVVAGSRQIYL 1461
KAGYSLTKLLARLKNSIRLIDRPHGQH+V+LAED P+YME +RSDPG +V S+QIYL
Sbjct: 293 KAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDLPKYMEVNGERSDPGAIVGSSKQIYL 352
Query: 1462 TFPAESTFTEEDVSNYFKNFGPVQDVRIPCQQKRMFGFVTFLYPETVKIILTKGNPHFVC 1641
TFPA+STFTE+DVSNYF FGPVQDVRIPCQQKRMFGFVTF++ ETVK ILTKGNPH++C
Sbjct: 353 TFPADSTFTEQDVSNYFNKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILTKGNPHYIC 412
Query: 1642 GARVLVKPYREK--SRLVDRKYNEKSDSPLYYPSNFLDMEPEMQIAPRLCDTSRLLRK-Q 1812
GARVLVKPYREK SR VDR+ + P+YY +F+D + E+Q PR+CD SRLLRK Q
Sbjct: 413 GARVLVKPYREKASSRTVDRRQH-----PMYYSPHFIDEDSELQSIPRVCDNSRLLRKQQ 467
Query: 1813 FMEDHXXXXXXXXXXXXXXXXGHRPLAHQPYFGYSMDDLKVSD--AHRDQSEFTSRDRFN 1986
ME+H P PYFGYSMD+ K AH +Q+EF S +R N
Sbjct: 468 LMEEHEQALELERRRLSELQL--TPKTAHPYFGYSMDEFKQHSDAAHAEQAEFPSAERLN 525
Query: 1987 YLFDVFNNGSTSDDKGRHSNSNNYSDQE-SQGLNLPESPFASPMGSSISTV 2136
YL +V NNGSTS+D+ S NY++QE SQGLNLPESPFASP+ +SISTV
Sbjct: 526 YLLEVLNNGSTSEDR-----STNYNEQESSQGLNLPESPFASPIRNSISTV 571
>ref|XP_002320513.1| predicted protein [Populus trichocarpa] gi|222861286|gb|EEE98828.1|
predicted protein [Populus trichocarpa]
Length = 554
Score = 683 bits (1763), Expect = 0.0
Identities = 349/585 (59%), Positives = 416/585 (71%), Gaps = 1/585 (0%)
Frame = +1
Query: 388 MDFTEATKTVYDRIQTLEPDHVSKIIGYLLLQDNGERDMIRLAFGPDISIQSLITQAKLE 567
MDF+E+TK VY+RIQ +EP+ V KIIGY+LLQ++GER+MIRLAF PD I + I++AK +
Sbjct: 1 MDFSESTKVVYNRIQEIEPEFVGKIIGYILLQNHGEREMIRLAFSPDNLIYATISKAKSD 60
Query: 568 LGLSPKPGISAPIPPASMNLAPTSDLPLQFTXXXXXXXXXXXXXXTLRVAPPYWDPLVMV 747
LGL+ P + PI P+ +N AP SD+ LQF +R A +WD V
Sbjct: 61 LGLNKTP-VPNPISPSQVNPAPVSDVHLQFIPNTAVSSHPISSPIKIRTAGSFWDAQVT- 118
Query: 748 DQQPLHNMDFISPAYSDTVSDDYRFHNQAQFLSLEDQLDAVNHSGHDFSSNFFYPDGTLG 927
DYR NQ QFL+ +DQL+ VN DFSS++FYP+ LG
Sbjct: 119 ---------------------DYRLQNQMQFLTSDDQLEFVNS---DFSSSYFYPEPALG 154
Query: 928 NMSARTSRRSPSLPEFPVKACHYFNKGFCKHGSSCRYFHGQPVPDSFSQIFSPNSNDLIT 1107
RTSRRSPSLPEFPVK CHYFNKGFCKHG++CRYFHG P+P+SFSQI S NSN++
Sbjct: 155 ---PRTSRRSPSLPEFPVKICHYFNKGFCKHGNNCRYFHGHPMPESFSQILSLNSNEIAN 211
Query: 1108 DDHFL-PGSXXXXXXXXXXXXXSRRGCPVSIASLPLLYQEKYGRTLQAEGYLTESQRHGK 1284
D+HF+ PGS SRRG PVSIASLP++Y EKYGR LQAEGYLTESQRHGK
Sbjct: 212 DEHFISPGSLEKLELELTELLKSRRGVPVSIASLPMMYYEKYGRMLQAEGYLTESQRHGK 271
Query: 1285 AGYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAPRYMEYRNDRSDPGGVVAGSRQIYLT 1464
AGYSLTKLLARLKNSIRLIDRPHGQH+V+L ED P+Y+EY +R+DPGG+VAGSRQIYLT
Sbjct: 272 AGYSLTKLLARLKNSIRLIDRPHGQHSVILTEDVPKYLEYAGERNDPGGIVAGSRQIYLT 331
Query: 1465 FPAESTFTEEDVSNYFKNFGPVQDVRIPCQQKRMFGFVTFLYPETVKIILTKGNPHFVCG 1644
FPAESTFTE+DVSNYF FGPVQDVRIPCQQKRMFGFVTF++ ETVK IL+KGNPH VCG
Sbjct: 332 FPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILSKGNPHHVCG 391
Query: 1645 ARVLVKPYREKSRLVDRKYNEKSDSPLYYPSNFLDMEPEMQIAPRLCDTSRLLRKQFMED 1824
ARVLVKPYREKSRLVDRKY EK P +Y +F+D + E+ PR+CD SRLLRKQ ME+
Sbjct: 392 ARVLVKPYREKSRLVDRKYAEKIQHPFFYSQHFIDGDSELHSVPRVCDNSRLLRKQLMEE 451
Query: 1825 HXXXXXXXXXXXXXXXXGHRPLAHQPYFGYSMDDLKVSDAHRDQSEFTSRDRFNYLFDVF 2004
H +PLA Y G+SMD+ K+S+ DQ F S + FNY FDV
Sbjct: 452 HEQALELERRRLSEFQLAPKPLARHAYHGHSMDEFKLSEEQADQ--FPSAEHFNYWFDVL 509
Query: 2005 NNGSTSDDKGRHSNSNNYSDQESQGLNLPESPFASPMGSSISTVI 2139
NNGSTS++K RH+ +N +QG+NLPESPFAS +G ISTVI
Sbjct: 510 NNGSTSEEKHRHTRTNCSEQDSNQGVNLPESPFASAIGKGISTVI 554
>emb|CBI28414.3| unnamed protein product [Vitis vinifera]
Length = 525
Score = 626 bits (1615), Expect = e-177
Identities = 344/599 (57%), Positives = 406/599 (67%), Gaps = 7/599 (1%)
Frame = +1
Query: 361 PLTPGNQCKMDFTEATKTVYDRIQTLEPDHVSKIIGYLLLQDNGERDMIRLAFGPDISIQ 540
PL MDF+E+TK VY+RIQ LEP++VSKIIGYLLLQD+GERDMIR AF D +IQ
Sbjct: 5 PLFSWVDTDMDFSESTKVVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRRAFTSDNAIQ 64
Query: 541 SLITQAKLELGLSPKPGISAPIPPASMNLAPTSDLPLQFTXXXXXXXXXXXXXXTLRVAP 720
LI +AK ELGLS KP +S+PI +P
Sbjct: 65 CLINKAKAELGLSSKPAVSSPI------------------------------------SP 88
Query: 721 PYWDPLVMVDQQPLHNMDFISPAYSDTVSDDYRFHNQAQFLSLEDQLDAVNHSGHDFSSN 900
P +P SP+ S Q FL++EDQL+ N G +FS +
Sbjct: 89 PQVNP---------------SPSMS-----------QIHFLAMEDQLE--NSVGSEFSGS 120
Query: 901 FFYPDGTLGNMSARTSRRSPSLPEFPVKACHYFNKGFCKHGSSCRYFHGQPVPDSFSQIF 1080
++Y + L + R SRRSPSLPEFP+K CHYFNKGFCKHG+SCRYFHG P+ +SFSQIF
Sbjct: 121 YYYAEQAL---NTRISRRSPSLPEFPLKVCHYFNKGFCKHGNSCRYFHGHPMLESFSQIF 177
Query: 1081 SPNSNDLITDDH-FLPGSXXXXXXXXXXXXXSRRGCPVSIASLPLLYQEKYGRTLQAEGY 1257
SP +N+L DDH F PGS SRRGCPVSIASLP++Y EKYGRTLQAEGY
Sbjct: 178 SPGANELPNDDHVFPPGSLEKLELELTELLKSRRGCPVSIASLPMMYYEKYGRTLQAEGY 237
Query: 1258 LTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAPRYMEYRNDRSDPGGVV 1437
LTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQH+V+LAED P+YME +RSDPG +V
Sbjct: 238 LTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDLPKYMEVNGERSDPGAIV 297
Query: 1438 AGSRQIYLTFPAESTFTEEDVSNYFKNFGPVQDVRIPCQQKRMFGFVTFLYPETVKIILT 1617
S+QIYLTFPA+STFTE+DVSNYF FGPVQDVRIPCQQKRMFGFVTF++ ETVK ILT
Sbjct: 298 GSSKQIYLTFPADSTFTEQDVSNYFNKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILT 357
Query: 1618 KGNPHFVCGARVLVKPYREK--SRLVDRKYNEKSDSPLYYPSNFLDMEPEMQIAPRLCDT 1791
KGNPH++CGARVLVKPYREK SR VDR+ + P+YY +F+D + E+Q PR+CD
Sbjct: 358 KGNPHYICGARVLVKPYREKASSRTVDRRQH-----PMYYSPHFIDEDSELQSIPRVCDN 412
Query: 1792 SRLLRK-QFMEDHXXXXXXXXXXXXXXXXGHRPLAHQPYFGYSMDDLKVSD--AHRDQSE 1962
SRLLRK Q ME+H P PYFGYSMD+ K AH +Q+E
Sbjct: 413 SRLLRKQQLMEEHEQALELERRRLSELQL--TPKTAHPYFGYSMDEFKQHSDAAHAEQAE 470
Query: 1963 FTSRDRFNYLFDVFNNGSTSDDKGRHSNSNNYSDQE-SQGLNLPESPFASPMGSSISTV 2136
F S +R NYL +V NNGSTS+D+ S NY++QE SQGLNLPESPFASP+ +SISTV
Sbjct: 471 FPSAERLNYLLEVLNNGSTSEDR-----STNYNEQESSQGLNLPESPFASPIRNSISTV 524
>ref|XP_002529054.1| RNA binding protein, putative [Ricinus communis]
gi|223531534|gb|EEF33365.1| RNA binding protein, putative
[Ricinus communis]
Length = 551
Score = 569 bits (1466), Expect = e-159
Identities = 313/587 (53%), Positives = 382/587 (65%), Gaps = 3/587 (0%)
Frame = +1
Query: 388 MDFTEATKTVYDRIQTLEPDHVSKIIGYLLLQDNGERDMIRLAFGPDISIQSLITQAKLE 567
MDF+E T+ V+++I+ +EP++V+KIIGYLLLQD +++MI LA PD+ IQ +I +AK E
Sbjct: 1 MDFSEHTRVVFNKIKKIEPENVTKIIGYLLLQDGSDQEMINLAMSPDVVIQDVIYKAKAE 60
Query: 568 LGLSPKPGISAPIPPASMNLAPT-SDLPLQFTXXXXXXXXXXXXXXTLRVAPPYWDPLVM 744
L + P+ P SMN P S+ QF RV YW+ V
Sbjct: 61 LNQLALKSAATPLSP-SMNSPPAVSEFSSQFRAFSPVSSRSYLSPQHFRVPSTYWESQVA 119
Query: 745 VDQQPLHNMDFISPAYSDTVSDDYRFHNQAQFLSLEDQLDAVNHSGHDFSSNFFYPDGTL 924
H+ DF+ Y D++++ NQAQFLSLEDQL++VN F S+ FY D L
Sbjct: 120 SK----HSSDFVPMTYQDSMTE---LQNQAQFLSLEDQLESVNLGNAGFPSDLFYSDAAL 172
Query: 925 GNMSARTSRRSPSLPEFPVKACHYFNKGFCKHGSSCRYFHGQPVPDSFSQIFSPNSNDLI 1104
G+ AR RR SL E +K CHYFNKG+CKHGS+CRYFHGQ + DSF + F + D I
Sbjct: 173 GSFRARAGRRYSSLNENSMKICHYFNKGYCKHGSNCRYFHGQ-ISDSFPRTFDAINEDQI 231
Query: 1105 TDDHFLPGSXXXXXXXXXXXXXSRRGCPVSIASLPLLYQEKYGRTLQAEGYLTESQRHGK 1284
F PGS SR+G PVSIASLP+LY EKYG+ LQA+GYLTESQRHGK
Sbjct: 232 ----FSPGSLEKLELEIIELLKSRKGNPVSIASLPMLYYEKYGKVLQADGYLTESQRHGK 287
Query: 1285 AGYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAPRYMEYRNDRSDPGGVVAGSRQIYLT 1464
AGYSLTKLLARLKNSIRLIDRPHGQHAV+LAED P+YME R DR+DPG +V+GSRQIYLT
Sbjct: 288 AGYSLTKLLARLKNSIRLIDRPHGQHAVILAEDVPKYMENRGDRNDPGPIVSGSRQIYLT 347
Query: 1465 FPAESTFTEEDVSNYFKNFGPVQDVRIPCQQKRMFGFVTFLYPETVKIILTKGNPHFVCG 1644
FPAESTFTE+DVSNYF FGPV+DVRIPCQQKRMFGFVTF +TVKIIL KGNPHFVC
Sbjct: 348 FPAESTFTEDDVSNYFNKFGPVEDVRIPCQQKRMFGFVTFESADTVKIILAKGNPHFVCN 407
Query: 1645 ARVLVKPYREKSRLVDRKYNEKSDSPLYYPSNFLDMEPEMQIAPRLCDTSRLLRKQFMED 1824
ARVLVKPYRE L+ Y+ S+++DM+ E+ R +TSRLLRKQ +E+
Sbjct: 408 ARVLVKPYRENQSLL-----------XYFSSHYVDMDAELHSMSRGYETSRLLRKQLLEE 456
Query: 1825 HXXXXXXXXXXXXXXXXGHRPLAHQPYFGYSMDDLKVSDAHRDQSEFTSRDRFNYLFDV- 2001
+P++H YF Y MD KVS+ D F + V
Sbjct: 457 QEQALELERRQRLAELRIRKPVSHHSYFDYPMDGFKVSE-----------DNFELPYHVL 505
Query: 2002 -FNNGSTSDDKGRHSNSNNYSDQESQGLNLPESPFASPMGSSISTVI 2139
F NGS +DDK RH + NY+DQ+SQGLNLPESPFAS + SSIST+I
Sbjct: 506 DFINGSGNDDKIRHIET-NYADQDSQGLNLPESPFASAIPSSISTII 551