BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001031
         (1282 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282635.1| PREDICTED: putative exosome complex componen...   393   e-107
ref|XP_002318044.1| predicted protein [Populus trichocarpa] gi|1...   386   e-105
ref|XP_003613959.1| Exosome complex exonuclease RRP40 [Medicago ...   376   e-102
ref|XP_004138110.1| PREDICTED: putative exosome complex componen...   372   e-100
ref|XP_003518749.1| PREDICTED: putative exosome complex componen...   367   5e-99

>ref|XP_002282635.1| PREDICTED: putative exosome complex component rrp40 [Vitis vinifera]
            gi|297733775|emb|CBI15022.3| unnamed protein product
            [Vitis vinifera]
          Length = 237

 Score =  393 bits (1010), Expect = e-107
 Identities = 198/237 (83%), Positives = 213/237 (89%)
 Frame = -3

Query: 1214 MVADSKSAFIDQTVVPGDVVLDLSSMSNHTIKLGQGLRQDGDVISVMKAGKLRFSKPNKY 1035
            M  ++ ++F+DQ VVPGDVVLDLS M N TIKLG GL QD D I+V KAG+LRFSKPNKY
Sbjct: 1    MEDNTPASFVDQLVVPGDVVLDLSKMGNQTIKLGGGLHQDCDAITVTKAGRLRFSKPNKY 60

Query: 1034 WVESSNKRYVPCVEDTVLGIVVDQKADNFLVDIKGPTLAFLPVLAFEGGSRRNKPKFEVG 855
            WVESS KRYVPCVEDTVLGIVVD KADNFLVDIKGP LAFLPVLAFEGG+RRN PKFE G
Sbjct: 61   WVESSQKRYVPCVEDTVLGIVVDSKADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEAG 120

Query: 854  KLLYVRVVKANADMNPELSCTDVNGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEA 675
             LLYVRVVKAN  MNPELSCTD +GKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEA
Sbjct: 121  TLLYVRVVKANTGMNPELSCTDASGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEA 180

Query: 674  LGKKLSFEIAVGLNGRVWVNAESPSTVILVSNAIMTSESLTGVQQRIMVEKLMQRVQ 504
            LGKKLSFEIAVGLNGRVWVNA SPSTVILV+NAIM SESL+ VQQ+IMV+KL+QR+Q
Sbjct: 181  LGKKLSFEIAVGLNGRVWVNASSPSTVILVANAIMNSESLSVVQQKIMVDKLLQRIQ 237


>ref|XP_002318044.1| predicted protein [Populus trichocarpa] gi|118482713|gb|ABK93275.1|
            unknown [Populus trichocarpa] gi|222858717|gb|EEE96264.1|
            predicted protein [Populus trichocarpa]
          Length = 242

 Score =  386 bits (992), Expect = e-105
 Identities = 192/233 (82%), Positives = 209/233 (89%)
 Frame = -3

Query: 1202 SKSAFIDQTVVPGDVVLDLSSMSNHTIKLGQGLRQDGDVISVMKAGKLRFSKPNKYWVES 1023
            S + FID  VVPGDVV+DLSSM+N TIKLG GLRQD D ISVMKAGKLRFSKPNKYWVE+
Sbjct: 8    SPATFIDNLVVPGDVVVDLSSMTNQTIKLGSGLRQDCDAISVMKAGKLRFSKPNKYWVET 67

Query: 1022 SNKRYVPCVEDTVLGIVVDQKADNFLVDIKGPTLAFLPVLAFEGGSRRNKPKFEVGKLLY 843
            S KRYVPC ED+VLGIVVD K+DNFL+DIKGP LAFLPVLAFEGG+RRN PKFE G LLY
Sbjct: 68   SQKRYVPCAEDSVLGIVVDSKSDNFLIDIKGPALAFLPVLAFEGGTRRNIPKFEAGTLLY 127

Query: 842  VRVVKANADMNPELSCTDVNGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEALGKK 663
            VRVVKAN  MNPELSCTD +GKAAEFG LKDGYMFE STGLSRMLLSSPTCPVLEALGKK
Sbjct: 128  VRVVKANPGMNPELSCTDASGKAAEFGALKDGYMFECSTGLSRMLLSSPTCPVLEALGKK 187

Query: 662  LSFEIAVGLNGRVWVNAESPSTVILVSNAIMTSESLTGVQQRIMVEKLMQRVQ 504
            LSFEIAVGLNGRVWVNA SPS VI+V+NAIM SE+L+GVQQ+IM EKL+Q++Q
Sbjct: 188  LSFEIAVGLNGRVWVNANSPSIVIIVANAIMNSETLSGVQQKIMAEKLLQKIQ 240


>ref|XP_003613959.1| Exosome complex exonuclease RRP40 [Medicago truncatula]
            gi|217074508|gb|ACJ85614.1| unknown [Medicago truncatula]
            gi|355515294|gb|AES96917.1| Exosome complex exonuclease
            RRP40 [Medicago truncatula] gi|388510130|gb|AFK43131.1|
            unknown [Medicago truncatula]
          Length = 240

 Score =  376 bits (966), Expect = e-102
 Identities = 187/235 (79%), Positives = 209/235 (88%)
 Frame = -3

Query: 1208 ADSKSAFIDQTVVPGDVVLDLSSMSNHTIKLGQGLRQDGDVISVMKAGKLRFSKPNKYWV 1029
            A S + F+DQ V PGDVVLDLS+M+N TIKLG GLRQDGDVISVMKAG+LRFSKPNKYWV
Sbjct: 6    AGSSTNFVDQLVYPGDVVLDLSTMTNQTIKLGGGLRQDGDVISVMKAGRLRFSKPNKYWV 65

Query: 1028 ESSNKRYVPCVEDTVLGIVVDQKADNFLVDIKGPTLAFLPVLAFEGGSRRNKPKFEVGKL 849
            ESS KRYVP  ED+VLGI+VD ++DNFLVDIKGPTLAFLPVLAFEGG+RRN PKFEVG L
Sbjct: 66   ESSQKRYVPHAEDSVLGIIVDSRSDNFLVDIKGPTLAFLPVLAFEGGTRRNIPKFEVGAL 125

Query: 848  LYVRVVKANADMNPELSCTDVNGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEALG 669
            +YVRVVKA   MNPELSCTD +GKA EFG LK+GYMFE STGLSRMLLS+PTCPVL+ LG
Sbjct: 126  IYVRVVKAIPGMNPELSCTDASGKAGEFGALKEGYMFECSTGLSRMLLSTPTCPVLDTLG 185

Query: 668  KKLSFEIAVGLNGRVWVNAESPSTVILVSNAIMTSESLTGVQQRIMVEKLMQRVQ 504
            KKLSFEIAVGLNGRVWVNA SPST I+V+NA++ SE L+GVQQ+IM EKL+QRVQ
Sbjct: 186  KKLSFEIAVGLNGRVWVNASSPSTTIIVANALINSEVLSGVQQKIMAEKLLQRVQ 240


>ref|XP_004138110.1| PREDICTED: putative exosome complex component rrp40-like [Cucumis
            sativus] gi|449477413|ref|XP_004155016.1| PREDICTED:
            putative exosome complex component rrp40-like [Cucumis
            sativus]
          Length = 243

 Score =  372 bits (954), Expect = e-100
 Identities = 185/239 (77%), Positives = 208/239 (87%)
 Frame = -3

Query: 1220 VRMVADSKSAFIDQTVVPGDVVLDLSSMSNHTIKLGQGLRQDGDVISVMKAGKLRFSKPN 1041
            V   + S S  +DQ VVPGDVVLDLS+M+N TIKLG GLRQD D ISV K GKLRFSKPN
Sbjct: 2    VEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPN 61

Query: 1040 KYWVESSNKRYVPCVEDTVLGIVVDQKADNFLVDIKGPTLAFLPVLAFEGGSRRNKPKFE 861
            KYWVESS KRYVPC ED VLGIV+D +ADNFLVDIKGP+LAFLPVLAFEGG+RRN PKFE
Sbjct: 62   KYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFE 121

Query: 860  VGKLLYVRVVKANADMNPELSCTDVNGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVL 681
            +G LLYVRVVK N  MNPEL+CTD +GKAA FG LKDGYMFE STGLSRMLLSSP+CPVL
Sbjct: 122  MGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVL 181

Query: 680  EALGKKLSFEIAVGLNGRVWVNAESPSTVILVSNAIMTSESLTGVQQRIMVEKLMQRVQ 504
            E+LGKKLSFE AVGLNGRVWVNA+SPST+I+VSNAI+ SE+L+GVQQRIMV+KL+  ++
Sbjct: 182  ESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240


>ref|XP_003518749.1| PREDICTED: putative exosome complex component rrp40-like [Glycine
            max]
          Length = 240

 Score =  367 bits (941), Expect = 5e-99
 Identities = 179/234 (76%), Positives = 207/234 (88%)
 Frame = -3

Query: 1208 ADSKSAFIDQTVVPGDVVLDLSSMSNHTIKLGQGLRQDGDVISVMKAGKLRFSKPNKYWV 1029
            + S +  +DQ+V PGDV+LDLS+M+N TIKLG GLRQD D ISVMKAG+LRFSKPNKYWV
Sbjct: 6    SSSSTNLVDQSVCPGDVILDLSNMTNQTIKLGGGLRQDCDAISVMKAGRLRFSKPNKYWV 65

Query: 1028 ESSNKRYVPCVEDTVLGIVVDQKADNFLVDIKGPTLAFLPVLAFEGGSRRNKPKFEVGKL 849
            E+S KRYVP  ED+VLGIVVD ++DNFLVDIKGP LAFLPVLAFEGG+RRN P+FE+G L
Sbjct: 66   ENSQKRYVPHAEDSVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPRFEIGTL 125

Query: 848  LYVRVVKANADMNPELSCTDVNGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEALG 669
            +Y RVVKAN  MNPEL+CTD +GKAAEFG LKDGYMFE +TGLSRMLLSSPTCPVL+ALG
Sbjct: 126  IYARVVKANPGMNPELACTDASGKAAEFGALKDGYMFECTTGLSRMLLSSPTCPVLDALG 185

Query: 668  KKLSFEIAVGLNGRVWVNAESPSTVILVSNAIMTSESLTGVQQRIMVEKLMQRV 507
            KKLSFEIAVGLNGRVWV+A SP T I+V+NAIM SE+L+G QQRIMVEKL++R+
Sbjct: 186  KKLSFEIAVGLNGRVWVSAASPQTTIVVANAIMNSETLSGAQQRIMVEKLLERI 239